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Red Hat Bugzilla – Attachment 1252948 Details for
Bug 1423873
libpwiz: FTBFS in rawhide
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build.log
<fdopen> (text/plain), 353.75 KB, created by
Fedora Release Engineering
on 2017-02-17 15:04:44 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
Fedora Release Engineering
Created:
2017-02-17 15:04:44 UTC
Size:
353.75 KB
patch
obsolete
>Mock Version: 1.3.3 >Mock Version: 1.3.3 >ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64 --nodeps /builddir/build/SPECS/libpwiz.spec'], logger=<mockbuild.trace_decorator.getLog object at 0x3fffad4f2358>uid=1000gid=425env={'SHELL': '/bin/bash', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'TERM': 'vt100', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"'}chrootPath='/var/lib/mock/f26-build-7633464-694369/root'timeout=172800shell=Falseuser='mockbuild'printOutput=False) >Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64 --nodeps /builddir/build/SPECS/libpwiz.spec'] with env {'SHELL': '/bin/bash', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'TERM': 'vt100', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"'} and shell False >Building target platforms: ppc64 >Building for target ppc64 >Wrote: /builddir/build/SRPMS/libpwiz-3.0.10422-2.fc26.src.rpm >Child return code was: 0 >ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/libpwiz.spec'], logger=<mockbuild.trace_decorator.getLog object at 0x3fffad4f2358>uid=1000gid=425env={'SHELL': '/bin/bash', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'TERM': 'vt100', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"'}chrootPath='/var/lib/mock/f26-build-7633464-694369/root'timeout=172800shell=Falseprivate_network=Trueuser='mockbuild'printOutput=False) >Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/libpwiz.spec'] with env {'SHELL': '/bin/bash', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'TERM': 'vt100', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"'} and shell False >Building target platforms: ppc64 >Building for target ppc64 >Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.prXO1G >+ umask 022 >+ cd /builddir/build/BUILD >+ cd /builddir/build/BUILD >+ rm -rf pwiz >+ /usr/bin/gzip -dc /builddir/build/SOURCES/libpwiz_src_3_0_10422.tgz >+ /usr/bin/tar -xof - >+ STATUS=0 >+ '[' 0 -ne 0 ']' >+ cd pwiz >+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . >+ install -pm 755 /builddir/build/SOURCES/libpwiz-tiny.pwiz.1.1.1.mzML . >++ find . -type f '(' -name '*.cpp' -o -name '*.hpp' ')' >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/DelimReader.hpp >+ dos2unix ./pwiz/data/identdata/DelimReader.hpp >dos2unix: converting file ./pwiz/data/identdata/DelimReader.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/TextWriter.hpp >+ dos2unix ./pwiz/data/identdata/TextWriter.hpp >dos2unix: converting file ./pwiz/data/identdata/TextWriter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/References.hpp >+ dos2unix ./pwiz/data/identdata/References.hpp >dos2unix: converting file ./pwiz/data/identdata/References.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/IO.cpp >+ dos2unix ./pwiz/data/identdata/IO.cpp >dos2unix: converting file ./pwiz/data/identdata/IO.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/DelimReader.cpp >+ dos2unix ./pwiz/data/identdata/DelimReader.cpp >dos2unix: converting file ./pwiz/data/identdata/DelimReader.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/IO.hpp >+ dos2unix ./pwiz/data/identdata/IO.hpp >dos2unix: converting file ./pwiz/data/identdata/IO.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_pepXML_Test.cpp >+ dos2unix ./pwiz/data/identdata/Serializer_pepXML_Test.cpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_pepXML_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Reader.hpp >+ dos2unix ./pwiz/data/identdata/Reader.hpp >dos2unix: converting file ./pwiz/data/identdata/Reader.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Reader.cpp >+ dos2unix ./pwiz/data/identdata/Reader.cpp >dos2unix: converting file ./pwiz/data/identdata/Reader.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_pepXML.cpp >+ dos2unix ./pwiz/data/identdata/Serializer_pepXML.cpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_pepXML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_protXML.cpp >+ dos2unix ./pwiz/data/identdata/Serializer_protXML.cpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_protXML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/ExtendedReadTest.cpp >+ dos2unix ./pwiz/data/identdata/ExtendedReadTest.cpp >dos2unix: converting file ./pwiz/data/identdata/ExtendedReadTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/KwCVMap.cpp >+ dos2unix ./pwiz/data/identdata/KwCVMap.cpp >dos2unix: converting file ./pwiz/data/identdata/KwCVMap.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/IdentDataTest.cpp >+ dos2unix ./pwiz/data/identdata/IdentDataTest.cpp >dos2unix: converting file ./pwiz/data/identdata/IdentDataTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/DiffTest.cpp >+ dos2unix ./pwiz/data/identdata/DiffTest.cpp >dos2unix: converting file ./pwiz/data/identdata/DiffTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_Text.hpp >+ dos2unix ./pwiz/data/identdata/Serializer_Text.hpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_Text.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Pep2MzIdent.cpp >+ dos2unix ./pwiz/data/identdata/Pep2MzIdent.cpp >dos2unix: converting file ./pwiz/data/identdata/Pep2MzIdent.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/References.cpp >+ dos2unix ./pwiz/data/identdata/References.cpp >dos2unix: converting file ./pwiz/data/identdata/References.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/KwCVMap.hpp >+ dos2unix ./pwiz/data/identdata/KwCVMap.hpp >dos2unix: converting file ./pwiz/data/identdata/KwCVMap.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/DelimWriter.cpp >+ dos2unix ./pwiz/data/identdata/DelimWriter.cpp >dos2unix: converting file ./pwiz/data/identdata/DelimWriter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Diff.hpp >+ dos2unix ./pwiz/data/identdata/Diff.hpp >dos2unix: converting file ./pwiz/data/identdata/Diff.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_mzid.hpp >+ dos2unix ./pwiz/data/identdata/Serializer_mzid.hpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_mzid.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_Text_Test.cpp >+ dos2unix ./pwiz/data/identdata/Serializer_Text_Test.cpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_Text_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/MzidPredicates.hpp >+ dos2unix ./pwiz/data/identdata/MzidPredicates.hpp >dos2unix: converting file ./pwiz/data/identdata/MzidPredicates.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/DefaultReaderList.cpp >+ dos2unix ./pwiz/data/identdata/DefaultReaderList.cpp >dos2unix: converting file ./pwiz/data/identdata/DefaultReaderList.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/IdentDataFile.hpp >+ dos2unix ./pwiz/data/identdata/IdentDataFile.hpp >dos2unix: converting file ./pwiz/data/identdata/IdentDataFile.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_protXML.hpp >+ dos2unix ./pwiz/data/identdata/Serializer_protXML.hpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_protXML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/KwCVMapTest.cpp >+ dos2unix ./pwiz/data/identdata/KwCVMapTest.cpp >dos2unix: converting file ./pwiz/data/identdata/KwCVMapTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/IdentDataFile.cpp >+ dos2unix ./pwiz/data/identdata/IdentDataFile.cpp >dos2unix: converting file ./pwiz/data/identdata/IdentDataFile.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_mzid_Test.cpp >+ dos2unix ./pwiz/data/identdata/Serializer_mzid_Test.cpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_mzid_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/DefaultReaderList.hpp >+ dos2unix ./pwiz/data/identdata/DefaultReaderList.hpp >dos2unix: converting file ./pwiz/data/identdata/DefaultReaderList.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Version.cpp >+ dos2unix ./pwiz/data/identdata/Version.cpp >dos2unix: converting file ./pwiz/data/identdata/Version.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_Text.cpp >+ dos2unix ./pwiz/data/identdata/Serializer_Text.cpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_Text.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Version.hpp >+ dos2unix ./pwiz/data/identdata/Version.hpp >dos2unix: converting file ./pwiz/data/identdata/Version.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_mzid.cpp >+ dos2unix ./pwiz/data/identdata/Serializer_mzid.cpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_mzid.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Pep2MzIdentTest.cpp >+ dos2unix ./pwiz/data/identdata/Pep2MzIdentTest.cpp >dos2unix: converting file ./pwiz/data/identdata/Pep2MzIdentTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/IOTest.cpp >+ dos2unix ./pwiz/data/identdata/IOTest.cpp >dos2unix: converting file ./pwiz/data/identdata/IOTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Pep2MzIdent.hpp >+ dos2unix ./pwiz/data/identdata/Pep2MzIdent.hpp >dos2unix: converting file ./pwiz/data/identdata/Pep2MzIdent.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/examples.hpp >+ dos2unix ./pwiz/data/identdata/examples.hpp >dos2unix: converting file ./pwiz/data/identdata/examples.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/IdentData.cpp >+ dos2unix ./pwiz/data/identdata/IdentData.cpp >dos2unix: converting file ./pwiz/data/identdata/IdentData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/DelimWriter.hpp >+ dos2unix ./pwiz/data/identdata/DelimWriter.hpp >dos2unix: converting file ./pwiz/data/identdata/DelimWriter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/ReferencesTest.cpp >+ dos2unix ./pwiz/data/identdata/ReferencesTest.cpp >dos2unix: converting file ./pwiz/data/identdata/ReferencesTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/IdentData.hpp >+ dos2unix ./pwiz/data/identdata/IdentData.hpp >dos2unix: converting file ./pwiz/data/identdata/IdentData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/MascotReader.hpp >+ dos2unix ./pwiz/data/identdata/MascotReader.hpp >dos2unix: converting file ./pwiz/data/identdata/MascotReader.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/ReaderTest.cpp >+ dos2unix ./pwiz/data/identdata/ReaderTest.cpp >dos2unix: converting file ./pwiz/data/identdata/ReaderTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_protXML_Test.cpp >+ dos2unix ./pwiz/data/identdata/Serializer_protXML_Test.cpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_protXML_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Diff.cpp >+ dos2unix ./pwiz/data/identdata/Diff.cpp >dos2unix: converting file ./pwiz/data/identdata/Diff.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/examples.cpp >+ dos2unix ./pwiz/data/identdata/examples.cpp >dos2unix: converting file ./pwiz/data/identdata/examples.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/identdata/Serializer_pepXML.hpp >+ dos2unix ./pwiz/data/identdata/Serializer_pepXML.hpp >dos2unix: converting file ./pwiz/data/identdata/Serializer_pepXML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ExtendedReaderList.cpp >+ dos2unix ./pwiz/data/vendor_readers/ExtendedReaderList.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/ExtendedReaderList.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Waters/Reader_Waters.cpp >+ dos2unix ./pwiz/data/vendor_readers/Waters/Reader_Waters.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Waters/Reader_Waters.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp >+ dos2unix ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp >+ dos2unix ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp >+ dos2unix ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp >+ dos2unix ./pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp >+ dos2unix ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Waters/Reader_Waters.hpp >+ dos2unix ./pwiz/data/vendor_readers/Waters/Reader_Waters.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Waters/Reader_Waters.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp >+ dos2unix ./pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.cpp >+ dos2unix ./pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp >+ dos2unix ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp >+ dos2unix ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp >+ dos2unix ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp >+ dos2unix ./pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp >+ dos2unix ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp >+ dos2unix ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp >+ dos2unix ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp >+ dos2unix ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp >+ dos2unix ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp >+ dos2unix ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp >+ dos2unix ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp >+ dos2unix ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp >+ dos2unix ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp >+ dos2unix ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp >+ dos2unix ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp >+ dos2unix ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp >+ dos2unix ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp >+ dos2unix ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp >+ dos2unix ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp >+ dos2unix ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ExtendedReaderList.hpp >+ dos2unix ./pwiz/data/vendor_readers/ExtendedReaderList.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/ExtendedReaderList.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.cpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/Reader_ABI.hpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/Reader_ABI.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/Reader_ABI.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/Reader_ABI.cpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/Reader_ABI.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/Reader_ABI.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp >+ dos2unix ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp >+ dos2unix ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp >+ dos2unix ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp >+ dos2unix ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp >+ dos2unix ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp >+ dos2unix ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp >+ dos2unix ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp >+ dos2unix ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp >+ dos2unix ./pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp >+ dos2unix ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp >+ dos2unix ./pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.cpp >+ dos2unix ./pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp >+ dos2unix ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp >dos2unix: converting file ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp >+ dos2unix ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp >dos2unix: converting file ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/TextWriter.hpp >+ dos2unix ./pwiz/data/proteome/TextWriter.hpp >dos2unix: converting file ./pwiz/data/proteome/TextWriter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteinListCacheTest.cpp >+ dos2unix ./pwiz/data/proteome/ProteinListCacheTest.cpp >dos2unix: converting file ./pwiz/data/proteome/ProteinListCacheTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteomeDataFileTest.cpp >+ dos2unix ./pwiz/data/proteome/ProteomeDataFileTest.cpp >dos2unix: converting file ./pwiz/data/proteome/ProteomeDataFileTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteomeDataTest.cpp >+ dos2unix ./pwiz/data/proteome/ProteomeDataTest.cpp >dos2unix: converting file ./pwiz/data/proteome/ProteomeDataTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Peptide.cpp >+ dos2unix ./pwiz/data/proteome/Peptide.cpp >dos2unix: converting file ./pwiz/data/proteome/Peptide.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Reader.hpp >+ dos2unix ./pwiz/data/proteome/Reader.hpp >dos2unix: converting file ./pwiz/data/proteome/Reader.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Reader.cpp >+ dos2unix ./pwiz/data/proteome/Reader.cpp >dos2unix: converting file ./pwiz/data/proteome/Reader.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteomeData.cpp >+ dos2unix ./pwiz/data/proteome/ProteomeData.cpp >dos2unix: converting file ./pwiz/data/proteome/ProteomeData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteomeDataFile.hpp >+ dos2unix ./pwiz/data/proteome/ProteomeDataFile.hpp >dos2unix: converting file ./pwiz/data/proteome/ProteomeDataFile.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Serializer_FASTA.cpp >+ dos2unix ./pwiz/data/proteome/Serializer_FASTA.cpp >dos2unix: converting file ./pwiz/data/proteome/Serializer_FASTA.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteomeDataFile.cpp >+ dos2unix ./pwiz/data/proteome/ProteomeDataFile.cpp >dos2unix: converting file ./pwiz/data/proteome/ProteomeDataFile.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/DiffTest.cpp >+ dos2unix ./pwiz/data/proteome/DiffTest.cpp >dos2unix: converting file ./pwiz/data/proteome/DiffTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Digestion.hpp >+ dos2unix ./pwiz/data/proteome/Digestion.hpp >dos2unix: converting file ./pwiz/data/proteome/Digestion.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Serializer_FASTA_Test.cpp >+ dos2unix ./pwiz/data/proteome/Serializer_FASTA_Test.cpp >dos2unix: converting file ./pwiz/data/proteome/Serializer_FASTA_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Diff.hpp >+ dos2unix ./pwiz/data/proteome/Diff.hpp >dos2unix: converting file ./pwiz/data/proteome/Diff.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteinListCache.cpp >+ dos2unix ./pwiz/data/proteome/ProteinListCache.cpp >dos2unix: converting file ./pwiz/data/proteome/ProteinListCache.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteinListCache.hpp >+ dos2unix ./pwiz/data/proteome/ProteinListCache.hpp >dos2unix: converting file ./pwiz/data/proteome/ProteinListCache.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Peptide.hpp >+ dos2unix ./pwiz/data/proteome/Peptide.hpp >dos2unix: converting file ./pwiz/data/proteome/Peptide.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Modification.hpp >+ dos2unix ./pwiz/data/proteome/Modification.hpp >dos2unix: converting file ./pwiz/data/proteome/Modification.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Reader_FASTA.hpp >+ dos2unix ./pwiz/data/proteome/Reader_FASTA.hpp >dos2unix: converting file ./pwiz/data/proteome/Reader_FASTA.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteomeData.hpp >+ dos2unix ./pwiz/data/proteome/ProteomeData.hpp >dos2unix: converting file ./pwiz/data/proteome/ProteomeData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/DefaultReaderList.cpp >+ dos2unix ./pwiz/data/proteome/DefaultReaderList.cpp >dos2unix: converting file ./pwiz/data/proteome/DefaultReaderList.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Modification.cpp >+ dos2unix ./pwiz/data/proteome/Modification.cpp >dos2unix: converting file ./pwiz/data/proteome/Modification.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/AminoAcidTest.cpp >+ dos2unix ./pwiz/data/proteome/AminoAcidTest.cpp >dos2unix: converting file ./pwiz/data/proteome/AminoAcidTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/PeptideTest.cpp >+ dos2unix ./pwiz/data/proteome/PeptideTest.cpp >dos2unix: converting file ./pwiz/data/proteome/PeptideTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/DefaultReaderList.hpp >+ dos2unix ./pwiz/data/proteome/DefaultReaderList.hpp >dos2unix: converting file ./pwiz/data/proteome/DefaultReaderList.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Version.cpp >+ dos2unix ./pwiz/data/proteome/Version.cpp >dos2unix: converting file ./pwiz/data/proteome/Version.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Digestion.cpp >+ dos2unix ./pwiz/data/proteome/Digestion.cpp >dos2unix: converting file ./pwiz/data/proteome/Digestion.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteinListWrapper.hpp >+ dos2unix ./pwiz/data/proteome/ProteinListWrapper.hpp >dos2unix: converting file ./pwiz/data/proteome/ProteinListWrapper.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Version.hpp >+ dos2unix ./pwiz/data/proteome/Version.hpp >dos2unix: converting file ./pwiz/data/proteome/Version.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ProteinListWrapperTest.cpp >+ dos2unix ./pwiz/data/proteome/ProteinListWrapperTest.cpp >dos2unix: converting file ./pwiz/data/proteome/ProteinListWrapperTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/examples.hpp >+ dos2unix ./pwiz/data/proteome/examples.hpp >dos2unix: converting file ./pwiz/data/proteome/examples.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Reader_FASTA.cpp >+ dos2unix ./pwiz/data/proteome/Reader_FASTA.cpp >dos2unix: converting file ./pwiz/data/proteome/Reader_FASTA.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/AminoAcid.cpp >+ dos2unix ./pwiz/data/proteome/AminoAcid.cpp >dos2unix: converting file ./pwiz/data/proteome/AminoAcid.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Serializer_FASTA.hpp >+ dos2unix ./pwiz/data/proteome/Serializer_FASTA.hpp >dos2unix: converting file ./pwiz/data/proteome/Serializer_FASTA.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/ReaderTest.cpp >+ dos2unix ./pwiz/data/proteome/ReaderTest.cpp >dos2unix: converting file ./pwiz/data/proteome/ReaderTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/Diff.cpp >+ dos2unix ./pwiz/data/proteome/Diff.cpp >dos2unix: converting file ./pwiz/data/proteome/Diff.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/AminoAcid.hpp >+ dos2unix ./pwiz/data/proteome/AminoAcid.hpp >dos2unix: converting file ./pwiz/data/proteome/AminoAcid.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/examples.cpp >+ dos2unix ./pwiz/data/proteome/examples.cpp >dos2unix: converting file ./pwiz/data/proteome/examples.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/proteome/DigestionTest.cpp >+ dos2unix ./pwiz/data/proteome/DigestionTest.cpp >dos2unix: converting file ./pwiz/data/proteome/DigestionTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/PeakData.cpp >+ dos2unix ./pwiz/data/misc/PeakData.cpp >dos2unix: converting file ./pwiz/data/misc/PeakData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/FrequencyData.hpp >+ dos2unix ./pwiz/data/misc/FrequencyData.hpp >dos2unix: converting file ./pwiz/data/misc/FrequencyData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/PeakDataTest.cpp >+ dos2unix ./pwiz/data/misc/PeakDataTest.cpp >dos2unix: converting file ./pwiz/data/misc/PeakDataTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/SampleDatumTest.cpp >+ dos2unix ./pwiz/data/misc/SampleDatumTest.cpp >dos2unix: converting file ./pwiz/data/misc/SampleDatumTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/FrequencyData.cpp >+ dos2unix ./pwiz/data/misc/FrequencyData.cpp >dos2unix: converting file ./pwiz/data/misc/FrequencyData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/FrequencyDataTestData.cpp >+ dos2unix ./pwiz/data/misc/FrequencyDataTestData.cpp >dos2unix: converting file ./pwiz/data/misc/FrequencyDataTestData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/FrequencyDataTestData.hpp >+ dos2unix ./pwiz/data/misc/FrequencyDataTestData.hpp >dos2unix: converting file ./pwiz/data/misc/FrequencyDataTestData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/FrequencyDataTest.cpp >+ dos2unix ./pwiz/data/misc/FrequencyDataTest.cpp >dos2unix: converting file ./pwiz/data/misc/FrequencyDataTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/MinimumPepXML.cpp >+ dos2unix ./pwiz/data/misc/MinimumPepXML.cpp >dos2unix: converting file ./pwiz/data/misc/MinimumPepXML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/MinimumPepXML.hpp >+ dos2unix ./pwiz/data/misc/MinimumPepXML.hpp >dos2unix: converting file ./pwiz/data/misc/MinimumPepXML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/SampleDatum.hpp >+ dos2unix ./pwiz/data/misc/SampleDatum.hpp >dos2unix: converting file ./pwiz/data/misc/SampleDatum.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/CalibrationParametersTest.cpp >+ dos2unix ./pwiz/data/misc/CalibrationParametersTest.cpp >dos2unix: converting file ./pwiz/data/misc/CalibrationParametersTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/CalibrationParameters.hpp >+ dos2unix ./pwiz/data/misc/CalibrationParameters.hpp >dos2unix: converting file ./pwiz/data/misc/CalibrationParameters.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/PeakData.hpp >+ dos2unix ./pwiz/data/misc/PeakData.hpp >dos2unix: converting file ./pwiz/data/misc/PeakData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/misc/MinimumPepXMLTest.cpp >+ dos2unix ./pwiz/data/misc/MinimumPepXMLTest.cpp >dos2unix: converting file ./pwiz/data/misc/MinimumPepXMLTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSDataMerger.hpp >+ dos2unix ./pwiz/data/msdata/MSDataMerger.hpp >dos2unix: converting file ./pwiz/data/msdata/MSDataMerger.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/TextWriter.hpp >+ dos2unix ./pwiz/data/msdata/TextWriter.hpp >dos2unix: converting file ./pwiz/data/msdata/TextWriter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/References.hpp >+ dos2unix ./pwiz/data/msdata/References.hpp >dos2unix: converting file ./pwiz/data/msdata/References.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_MSn_Test.cpp >+ dos2unix ./pwiz/data/msdata/Serializer_MSn_Test.cpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_MSn_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_BTDX.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_BTDX.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_BTDX.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/IO.cpp >+ dos2unix ./pwiz/data/msdata/IO.cpp >dos2unix: converting file ./pwiz/data/msdata/IO.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_mzXML_Test.cpp >+ dos2unix ./pwiz/data/msdata/Serializer_mzXML_Test.cpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_mzXML_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/IO.hpp >+ dos2unix ./pwiz/data/msdata/IO.hpp >dos2unix: converting file ./pwiz/data/msdata/IO.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_mzXML.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_mzXML.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_mzXML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_mzML_Test.cpp >+ dos2unix ./pwiz/data/msdata/Serializer_mzML_Test.cpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_mzML_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_mzML.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_mzML.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_mzML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_mzML_Test.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_mzML_Test.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_mzML_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Reader.hpp >+ dos2unix ./pwiz/data/msdata/Reader.hpp >dos2unix: converting file ./pwiz/data/msdata/Reader.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/ChromatogramListBase.hpp >+ dos2unix ./pwiz/data/msdata/ChromatogramListBase.hpp >dos2unix: converting file ./pwiz/data/msdata/ChromatogramListBase.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Reader.cpp >+ dos2unix ./pwiz/data/msdata/Reader.cpp >dos2unix: converting file ./pwiz/data/msdata/Reader.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumListCacheTest.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumListCacheTest.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumListCacheTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_BTDX.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_BTDX.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_BTDX.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSDataTest.cpp >+ dos2unix ./pwiz/data/msdata/MSDataTest.cpp >dos2unix: converting file ./pwiz/data/msdata/MSDataTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_MSn.hpp >+ dos2unix ./pwiz/data/msdata/Serializer_MSn.hpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_MSn.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_MGF.hpp >+ dos2unix ./pwiz/data/msdata/Serializer_MGF.hpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_MGF.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/LegacyAdapter.hpp >+ dos2unix ./pwiz/data/msdata/LegacyAdapter.hpp >dos2unix: converting file ./pwiz/data/msdata/LegacyAdapter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/ChromatogramList_mzML.hpp >+ dos2unix ./pwiz/data/msdata/ChromatogramList_mzML.hpp >dos2unix: converting file ./pwiz/data/msdata/ChromatogramList_mzML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/DiffTest.cpp >+ dos2unix ./pwiz/data/msdata/DiffTest.cpp >dos2unix: converting file ./pwiz/data/msdata/DiffTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumListCache.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumListCache.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumListCache.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_mzXML.cpp >+ dos2unix ./pwiz/data/msdata/Serializer_mzXML.cpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_mzXML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/References.cpp >+ dos2unix ./pwiz/data/msdata/References.cpp >dos2unix: converting file ./pwiz/data/msdata/References.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Diff.hpp >+ dos2unix ./pwiz/data/msdata/Diff.hpp >dos2unix: converting file ./pwiz/data/msdata/Diff.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_MGF_Test.cpp >+ dos2unix ./pwiz/data/msdata/Serializer_MGF_Test.cpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_MGF_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSNumpress.cpp >+ dos2unix ./pwiz/data/msdata/MSNumpress.cpp >dos2unix: converting file ./pwiz/data/msdata/MSNumpress.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSnReaderTest.cpp >+ dos2unix ./pwiz/data/msdata/MSnReaderTest.cpp >dos2unix: converting file ./pwiz/data/msdata/MSnReaderTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumListWrapper.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumListWrapper.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumListWrapper.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/ChromatogramList_mzML_Test.cpp >+ dos2unix ./pwiz/data/msdata/ChromatogramList_mzML_Test.cpp >dos2unix: converting file ./pwiz/data/msdata/ChromatogramList_mzML_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumInfo.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumInfo.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumInfo.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/LegacyAdapter.cpp >+ dos2unix ./pwiz/data/msdata/LegacyAdapter.cpp >dos2unix: converting file ./pwiz/data/msdata/LegacyAdapter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_MSn.cpp >+ dos2unix ./pwiz/data/msdata/Serializer_MSn.cpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_MSn.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_mzXML_Test.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_mzXML_Test.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_mzXML_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSData.hpp >+ dos2unix ./pwiz/data/msdata/MSData.hpp >dos2unix: converting file ./pwiz/data/msdata/MSData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumListBaseTest.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumListBaseTest.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumListBaseTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/DefaultReaderList.cpp >+ dos2unix ./pwiz/data/msdata/DefaultReaderList.cpp >dos2unix: converting file ./pwiz/data/msdata/DefaultReaderList.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_MGF.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_MGF.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_MGF.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumListBase.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumListBase.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumListBase.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumIterator.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumIterator.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumIterator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_mzML.cpp >+ dos2unix ./pwiz/data/msdata/Serializer_mzML.cpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_mzML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_MSn.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_MSn.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_MSn.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSDataFileTest.cpp >+ dos2unix ./pwiz/data/msdata/MSDataFileTest.cpp >dos2unix: converting file ./pwiz/data/msdata/MSDataFileTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_mzXML.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_mzXML.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_mzXML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_MGF.cpp >+ dos2unix ./pwiz/data/msdata/Serializer_MGF.cpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_MGF.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/ChromatogramList_mzML.cpp >+ dos2unix ./pwiz/data/msdata/ChromatogramList_mzML.cpp >dos2unix: converting file ./pwiz/data/msdata/ChromatogramList_mzML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumWorkerThreads.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumWorkerThreads.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumWorkerThreads.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSNumpress.hpp >+ dos2unix ./pwiz/data/msdata/MSNumpress.hpp >dos2unix: converting file ./pwiz/data/msdata/MSNumpress.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/DefaultReaderList.hpp >+ dos2unix ./pwiz/data/msdata/DefaultReaderList.hpp >dos2unix: converting file ./pwiz/data/msdata/DefaultReaderList.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Version.cpp >+ dos2unix ./pwiz/data/msdata/Version.cpp >dos2unix: converting file ./pwiz/data/msdata/Version.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_mzXML.hpp >+ dos2unix ./pwiz/data/msdata/Serializer_mzXML.hpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_mzXML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/BinaryDataEncoder.hpp >+ dos2unix ./pwiz/data/msdata/BinaryDataEncoder.hpp >dos2unix: converting file ./pwiz/data/msdata/BinaryDataEncoder.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSDataFile.cpp >+ dos2unix ./pwiz/data/msdata/MSDataFile.cpp >dos2unix: converting file ./pwiz/data/msdata/MSDataFile.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Version.hpp >+ dos2unix ./pwiz/data/msdata/Version.hpp >dos2unix: converting file ./pwiz/data/msdata/Version.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/IOTest.cpp >+ dos2unix ./pwiz/data/msdata/IOTest.cpp >dos2unix: converting file ./pwiz/data/msdata/IOTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MemoryMRUCache.hpp >+ dos2unix ./pwiz/data/msdata/MemoryMRUCache.hpp >dos2unix: converting file ./pwiz/data/msdata/MemoryMRUCache.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumInfo.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumInfo.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumInfo.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumIteratorTest.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumIteratorTest.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumIteratorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/examples.hpp >+ dos2unix ./pwiz/data/msdata/examples.hpp >dos2unix: converting file ./pwiz/data/msdata/examples.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSDataMergerTest.cpp >+ dos2unix ./pwiz/data/msdata/MSDataMergerTest.cpp >dos2unix: converting file ./pwiz/data/msdata/MSDataMergerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSDataMerger.cpp >+ dos2unix ./pwiz/data/msdata/MSDataMerger.cpp >dos2unix: converting file ./pwiz/data/msdata/MSDataMerger.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/LegacyAdapterTest.cpp >+ dos2unix ./pwiz/data/msdata/LegacyAdapterTest.cpp >dos2unix: converting file ./pwiz/data/msdata/LegacyAdapterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Serializer_mzML.hpp >+ dos2unix ./pwiz/data/msdata/Serializer_mzML.hpp >dos2unix: converting file ./pwiz/data/msdata/Serializer_mzML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/BinaryDataEncoderTest.cpp >+ dos2unix ./pwiz/data/msdata/BinaryDataEncoderTest.cpp >dos2unix: converting file ./pwiz/data/msdata/BinaryDataEncoderTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/ReferencesTest.cpp >+ dos2unix ./pwiz/data/msdata/ReferencesTest.cpp >dos2unix: converting file ./pwiz/data/msdata/ReferencesTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Index_mzML.hpp >+ dos2unix ./pwiz/data/msdata/Index_mzML.hpp >dos2unix: converting file ./pwiz/data/msdata/Index_mzML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_MSn.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_MSn.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_MSn.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/ChromatogramListBaseTest.cpp >+ dos2unix ./pwiz/data/msdata/ChromatogramListBaseTest.cpp >dos2unix: converting file ./pwiz/data/msdata/ChromatogramListBaseTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_MGF.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_MGF.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_MGF.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSDataFile.hpp >+ dos2unix ./pwiz/data/msdata/MSDataFile.hpp >dos2unix: converting file ./pwiz/data/msdata/MSDataFile.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/ReaderTest.cpp >+ dos2unix ./pwiz/data/msdata/ReaderTest.cpp >dos2unix: converting file ./pwiz/data/msdata/ReaderTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_MGF_Test.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_MGF_Test.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_MGF_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumIterator.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumIterator.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumIterator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumWorkerThreads.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumWorkerThreads.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumWorkerThreads.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/MSData.cpp >+ dos2unix ./pwiz/data/msdata/MSData.cpp >dos2unix: converting file ./pwiz/data/msdata/MSData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_MSn_Test.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_MSn_Test.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_MSn_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumInfoTest.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumInfoTest.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumInfoTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SHA1OutputObserver.hpp >+ dos2unix ./pwiz/data/msdata/SHA1OutputObserver.hpp >dos2unix: converting file ./pwiz/data/msdata/SHA1OutputObserver.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumListWrapperTest.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumListWrapperTest.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumListWrapperTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Diff.cpp >+ dos2unix ./pwiz/data/msdata/Diff.cpp >dos2unix: converting file ./pwiz/data/msdata/Diff.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumListCache.hpp >+ dos2unix ./pwiz/data/msdata/SpectrumListCache.hpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumListCache.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/BinaryDataEncoder.cpp >+ dos2unix ./pwiz/data/msdata/BinaryDataEncoder.cpp >dos2unix: converting file ./pwiz/data/msdata/BinaryDataEncoder.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/examples.cpp >+ dos2unix ./pwiz/data/msdata/examples.cpp >dos2unix: converting file ./pwiz/data/msdata/examples.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/SpectrumList_mzML.cpp >+ dos2unix ./pwiz/data/msdata/SpectrumList_mzML.cpp >dos2unix: converting file ./pwiz/data/msdata/SpectrumList_mzML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/msdata/Index_mzML.cpp >+ dos2unix ./pwiz/data/msdata/Index_mzML.cpp >dos2unix: converting file ./pwiz/data/msdata/Index_mzML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/TextWriter.hpp >+ dos2unix ./pwiz/data/tradata/TextWriter.hpp >dos2unix: converting file ./pwiz/data/tradata/TextWriter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/References.hpp >+ dos2unix ./pwiz/data/tradata/References.hpp >dos2unix: converting file ./pwiz/data/tradata/References.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/IO.cpp >+ dos2unix ./pwiz/data/tradata/IO.cpp >dos2unix: converting file ./pwiz/data/tradata/IO.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/Serializer_traML.hpp >+ dos2unix ./pwiz/data/tradata/Serializer_traML.hpp >dos2unix: converting file ./pwiz/data/tradata/Serializer_traML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/TraDataFile.hpp >+ dos2unix ./pwiz/data/tradata/TraDataFile.hpp >dos2unix: converting file ./pwiz/data/tradata/TraDataFile.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/IO.hpp >+ dos2unix ./pwiz/data/tradata/IO.hpp >dos2unix: converting file ./pwiz/data/tradata/IO.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/Reader.hpp >+ dos2unix ./pwiz/data/tradata/Reader.hpp >dos2unix: converting file ./pwiz/data/tradata/Reader.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/Reader.cpp >+ dos2unix ./pwiz/data/tradata/Reader.cpp >dos2unix: converting file ./pwiz/data/tradata/Reader.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/TraData.cpp >+ dos2unix ./pwiz/data/tradata/TraData.cpp >dos2unix: converting file ./pwiz/data/tradata/TraData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/DiffTest.cpp >+ dos2unix ./pwiz/data/tradata/DiffTest.cpp >dos2unix: converting file ./pwiz/data/tradata/DiffTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/TraDataFileTest.cpp >+ dos2unix ./pwiz/data/tradata/TraDataFileTest.cpp >dos2unix: converting file ./pwiz/data/tradata/TraDataFileTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/TraDataFile.cpp >+ dos2unix ./pwiz/data/tradata/TraDataFile.cpp >dos2unix: converting file ./pwiz/data/tradata/TraDataFile.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/Serializer_traML.cpp >+ dos2unix ./pwiz/data/tradata/Serializer_traML.cpp >dos2unix: converting file ./pwiz/data/tradata/Serializer_traML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/References.cpp >+ dos2unix ./pwiz/data/tradata/References.cpp >dos2unix: converting file ./pwiz/data/tradata/References.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/Diff.hpp >+ dos2unix ./pwiz/data/tradata/Diff.hpp >dos2unix: converting file ./pwiz/data/tradata/Diff.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/DefaultReaderList.cpp >+ dos2unix ./pwiz/data/tradata/DefaultReaderList.cpp >dos2unix: converting file ./pwiz/data/tradata/DefaultReaderList.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/Serializer_traML_Test.cpp >+ dos2unix ./pwiz/data/tradata/Serializer_traML_Test.cpp >dos2unix: converting file ./pwiz/data/tradata/Serializer_traML_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/DefaultReaderList.hpp >+ dos2unix ./pwiz/data/tradata/DefaultReaderList.hpp >dos2unix: converting file ./pwiz/data/tradata/DefaultReaderList.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/Version.cpp >+ dos2unix ./pwiz/data/tradata/Version.cpp >dos2unix: converting file ./pwiz/data/tradata/Version.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/Version.hpp >+ dos2unix ./pwiz/data/tradata/Version.hpp >dos2unix: converting file ./pwiz/data/tradata/Version.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/IOTest.cpp >+ dos2unix ./pwiz/data/tradata/IOTest.cpp >dos2unix: converting file ./pwiz/data/tradata/IOTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/examples.hpp >+ dos2unix ./pwiz/data/tradata/examples.hpp >dos2unix: converting file ./pwiz/data/tradata/examples.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/ReferencesTest.cpp >+ dos2unix ./pwiz/data/tradata/ReferencesTest.cpp >dos2unix: converting file ./pwiz/data/tradata/ReferencesTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/TraData.hpp >+ dos2unix ./pwiz/data/tradata/TraData.hpp >dos2unix: converting file ./pwiz/data/tradata/TraData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/ReaderTest.cpp >+ dos2unix ./pwiz/data/tradata/ReaderTest.cpp >dos2unix: converting file ./pwiz/data/tradata/ReaderTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/TraDataTest.cpp >+ dos2unix ./pwiz/data/tradata/TraDataTest.cpp >dos2unix: converting file ./pwiz/data/tradata/TraDataTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/Diff.cpp >+ dos2unix ./pwiz/data/tradata/Diff.cpp >dos2unix: converting file ./pwiz/data/tradata/Diff.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/tradata/examples.cpp >+ dos2unix ./pwiz/data/tradata/examples.cpp >dos2unix: converting file ./pwiz/data/tradata/examples.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/obo.cpp >+ dos2unix ./pwiz/data/common/obo.cpp >dos2unix: converting file ./pwiz/data/common/obo.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/Index.hpp >+ dos2unix ./pwiz/data/common/Index.hpp >dos2unix: converting file ./pwiz/data/common/Index.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/diff_std.cpp >+ dos2unix ./pwiz/data/common/diff_std.cpp >dos2unix: converting file ./pwiz/data/common/diff_std.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/UnimodTest.cpp >+ dos2unix ./pwiz/data/common/UnimodTest.cpp >dos2unix: converting file ./pwiz/data/common/UnimodTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/cvtest.cpp >+ dos2unix ./pwiz/data/common/cvtest.cpp >dos2unix: converting file ./pwiz/data/common/cvtest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/CVTranslatorTest.cpp >+ dos2unix ./pwiz/data/common/CVTranslatorTest.cpp >dos2unix: converting file ./pwiz/data/common/CVTranslatorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/Unimod.hpp >+ dos2unix ./pwiz/data/common/Unimod.hpp >dos2unix: converting file ./pwiz/data/common/Unimod.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/CVTranslator.cpp >+ dos2unix ./pwiz/data/common/CVTranslator.cpp >dos2unix: converting file ./pwiz/data/common/CVTranslator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/MemoryIndexTest.cpp >+ dos2unix ./pwiz/data/common/MemoryIndexTest.cpp >dos2unix: converting file ./pwiz/data/common/MemoryIndexTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/cvgen.cpp >+ dos2unix ./pwiz/data/common/cvgen.cpp >dos2unix: converting file ./pwiz/data/common/cvgen.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/CVTranslator.hpp >+ dos2unix ./pwiz/data/common/CVTranslator.hpp >dos2unix: converting file ./pwiz/data/common/CVTranslator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/MemoryIndex.cpp >+ dos2unix ./pwiz/data/common/MemoryIndex.cpp >dos2unix: converting file ./pwiz/data/common/MemoryIndex.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/Unimod.cpp >+ dos2unix ./pwiz/data/common/Unimod.cpp >dos2unix: converting file ./pwiz/data/common/Unimod.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/ParamTypesTest.cpp >+ dos2unix ./pwiz/data/common/ParamTypesTest.cpp >dos2unix: converting file ./pwiz/data/common/ParamTypesTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/ParamTypes.hpp >+ dos2unix ./pwiz/data/common/ParamTypes.hpp >dos2unix: converting file ./pwiz/data/common/ParamTypes.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/obotest.cpp >+ dos2unix ./pwiz/data/common/obotest.cpp >dos2unix: converting file ./pwiz/data/common/obotest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/obo.hpp >+ dos2unix ./pwiz/data/common/obo.hpp >dos2unix: converting file ./pwiz/data/common/obo.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/cv.hpp >+ dos2unix ./pwiz/data/common/cv.hpp >dos2unix: converting file ./pwiz/data/common/cv.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/diff_std_test.cpp >+ dos2unix ./pwiz/data/common/diff_std_test.cpp >dos2unix: converting file ./pwiz/data/common/diff_std_test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/ParamTypes.cpp >+ dos2unix ./pwiz/data/common/ParamTypes.cpp >dos2unix: converting file ./pwiz/data/common/ParamTypes.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/cv.cpp >+ dos2unix ./pwiz/data/common/cv.cpp >dos2unix: converting file ./pwiz/data/common/cv.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/MemoryIndex.hpp >+ dos2unix ./pwiz/data/common/MemoryIndex.hpp >dos2unix: converting file ./pwiz/data/common/MemoryIndex.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/BinaryIndexStream.cpp >+ dos2unix ./pwiz/data/common/BinaryIndexStream.cpp >dos2unix: converting file ./pwiz/data/common/BinaryIndexStream.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/BinaryIndexStreamTest.cpp >+ dos2unix ./pwiz/data/common/BinaryIndexStreamTest.cpp >dos2unix: converting file ./pwiz/data/common/BinaryIndexStreamTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/diff_std.hpp >+ dos2unix ./pwiz/data/common/diff_std.hpp >dos2unix: converting file ./pwiz/data/common/diff_std.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/data/common/BinaryIndexStream.hpp >+ dos2unix ./pwiz/data/common/BinaryIndexStream.hpp >dos2unix: converting file ./pwiz/data/common/BinaryIndexStream.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/proteome/pepdb.cpp >+ dos2unix ./pwiz/utility/proteome/pepdb.cpp >dos2unix: converting file ./pwiz/utility/proteome/pepdb.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/proteome/IPIFASTADatabase.hpp >+ dos2unix ./pwiz/utility/proteome/IPIFASTADatabase.hpp >dos2unix: converting file ./pwiz/utility/proteome/IPIFASTADatabase.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/proteome/IPIFASTADatabase.cpp >+ dos2unix ./pwiz/utility/proteome/IPIFASTADatabase.cpp >dos2unix: converting file ./pwiz/utility/proteome/IPIFASTADatabase.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/proteome/IPIFASTADatabaseTest.cpp >+ dos2unix ./pwiz/utility/proteome/IPIFASTADatabaseTest.cpp >dos2unix: converting file ./pwiz/utility/proteome/IPIFASTADatabaseTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/Parabola.cpp >+ dos2unix ./pwiz/utility/math/Parabola.cpp >dos2unix: converting file ./pwiz/utility/math/Parabola.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/LinearLeastSquaresTest.cpp >+ dos2unix ./pwiz/utility/math/LinearLeastSquaresTest.cpp >dos2unix: converting file ./pwiz/utility/math/LinearLeastSquaresTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/Stats.cpp >+ dos2unix ./pwiz/utility/math/Stats.cpp >dos2unix: converting file ./pwiz/utility/math/Stats.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/ParabolaTest.cpp >+ dos2unix ./pwiz/utility/math/ParabolaTest.cpp >dos2unix: converting file ./pwiz/utility/math/ParabolaTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/Stats.hpp >+ dos2unix ./pwiz/utility/math/Stats.hpp >dos2unix: converting file ./pwiz/utility/math/Stats.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/LinearSolver.hpp >+ dos2unix ./pwiz/utility/math/LinearSolver.hpp >dos2unix: converting file ./pwiz/utility/math/LinearSolver.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/HouseholderQR.hpp >+ dos2unix ./pwiz/utility/math/HouseholderQR.hpp >dos2unix: converting file ./pwiz/utility/math/HouseholderQR.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/erfTest.cpp >+ dos2unix ./pwiz/utility/math/erfTest.cpp >dos2unix: converting file ./pwiz/utility/math/erfTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/qrTest.cpp >+ dos2unix ./pwiz/utility/math/qrTest.cpp >dos2unix: converting file ./pwiz/utility/math/qrTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/MatchedFilterTest.cpp >+ dos2unix ./pwiz/utility/math/MatchedFilterTest.cpp >dos2unix: converting file ./pwiz/utility/math/MatchedFilterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/LinearSolverTest.cpp >+ dos2unix ./pwiz/utility/math/LinearSolverTest.cpp >dos2unix: converting file ./pwiz/utility/math/LinearSolverTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/MatchedFilter.hpp >+ dos2unix ./pwiz/utility/math/MatchedFilter.hpp >dos2unix: converting file ./pwiz/utility/math/MatchedFilter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/HouseholderQRTest.cpp >+ dos2unix ./pwiz/utility/math/HouseholderQRTest.cpp >dos2unix: converting file ./pwiz/utility/math/HouseholderQRTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/Types.hpp >+ dos2unix ./pwiz/utility/math/Types.hpp >dos2unix: converting file ./pwiz/utility/math/Types.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/OrderedPairTest.cpp >+ dos2unix ./pwiz/utility/math/OrderedPairTest.cpp >dos2unix: converting file ./pwiz/utility/math/OrderedPairTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/OrderedPair.hpp >+ dos2unix ./pwiz/utility/math/OrderedPair.hpp >dos2unix: converting file ./pwiz/utility/math/OrderedPair.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/MatrixInverse.hpp >+ dos2unix ./pwiz/utility/math/MatrixInverse.hpp >dos2unix: converting file ./pwiz/utility/math/MatrixInverse.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/qr.hpp >+ dos2unix ./pwiz/utility/math/qr.hpp >dos2unix: converting file ./pwiz/utility/math/qr.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/StatsTest.cpp >+ dos2unix ./pwiz/utility/math/StatsTest.cpp >dos2unix: converting file ./pwiz/utility/math/StatsTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/LinearLeastSquares.hpp >+ dos2unix ./pwiz/utility/math/LinearLeastSquares.hpp >dos2unix: converting file ./pwiz/utility/math/LinearLeastSquares.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/Parabola.hpp >+ dos2unix ./pwiz/utility/math/Parabola.hpp >dos2unix: converting file ./pwiz/utility/math/Parabola.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/erf.hpp >+ dos2unix ./pwiz/utility/math/erf.hpp >dos2unix: converting file ./pwiz/utility/math/erf.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/erf.cpp >+ dos2unix ./pwiz/utility/math/erf.cpp >dos2unix: converting file ./pwiz/utility/math/erf.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/math/round.hpp >+ dos2unix ./pwiz/utility/math/round.hpp >dos2unix: converting file ./pwiz/utility/math/round.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/SHA1Calculator.hpp >+ dos2unix ./pwiz/utility/misc/SHA1Calculator.hpp >dos2unix: converting file ./pwiz/utility/misc/SHA1Calculator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/endian_test.cpp >+ dos2unix ./pwiz/utility/misc/endian_test.cpp >dos2unix: converting file ./pwiz/utility/misc/endian_test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Export.hpp >+ dos2unix ./pwiz/utility/misc/Export.hpp >dos2unix: converting file ./pwiz/utility/misc/Export.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/ClickwrapPrompter.hpp >+ dos2unix ./pwiz/utility/misc/ClickwrapPrompter.hpp >dos2unix: converting file ./pwiz/utility/misc/ClickwrapPrompter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/shared_map.hpp >+ dos2unix ./pwiz/utility/misc/shared_map.hpp >dos2unix: converting file ./pwiz/utility/misc/shared_map.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/TabReader.hpp >+ dos2unix ./pwiz/utility/misc/TabReader.hpp >dos2unix: converting file ./pwiz/utility/misc/TabReader.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/DateTime.hpp >+ dos2unix ./pwiz/utility/misc/DateTime.hpp >dos2unix: converting file ./pwiz/utility/misc/DateTime.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/String.hpp >+ dos2unix ./pwiz/utility/misc/String.hpp >dos2unix: converting file ./pwiz/utility/misc/String.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Environment.hpp >+ dos2unix ./pwiz/utility/misc/Environment.hpp >dos2unix: converting file ./pwiz/utility/misc/Environment.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/SHA1.cpp >+ dos2unix ./pwiz/utility/misc/SHA1.cpp >dos2unix: converting file ./pwiz/utility/misc/SHA1.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Base64Test.cpp >+ dos2unix ./pwiz/utility/misc/Base64Test.cpp >dos2unix: converting file ./pwiz/utility/misc/Base64Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/DateTimeTest.cpp >+ dos2unix ./pwiz/utility/misc/DateTimeTest.cpp >dos2unix: converting file ./pwiz/utility/misc/DateTimeTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/MSIHandler.hpp >+ dos2unix ./pwiz/utility/misc/MSIHandler.hpp >dos2unix: converting file ./pwiz/utility/misc/MSIHandler.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Image.hpp >+ dos2unix ./pwiz/utility/misc/Image.hpp >dos2unix: converting file ./pwiz/utility/misc/Image.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Stream.hpp >+ dos2unix ./pwiz/utility/misc/Stream.hpp >dos2unix: converting file ./pwiz/utility/misc/Stream.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/SHA1CalculatorTest.cpp >+ dos2unix ./pwiz/utility/misc/SHA1CalculatorTest.cpp >dos2unix: converting file ./pwiz/utility/misc/SHA1CalculatorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/unit.hpp >+ dos2unix ./pwiz/utility/misc/unit.hpp >dos2unix: converting file ./pwiz/utility/misc/unit.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/CharIndexedVector.hpp >+ dos2unix ./pwiz/utility/misc/CharIndexedVector.hpp >dos2unix: converting file ./pwiz/utility/misc/CharIndexedVector.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Singleton.hpp >+ dos2unix ./pwiz/utility/misc/Singleton.hpp >dos2unix: converting file ./pwiz/utility/misc/Singleton.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/IterationListener.cpp >+ dos2unix ./pwiz/utility/misc/IterationListener.cpp >dos2unix: converting file ./pwiz/utility/misc/IterationListener.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/IntegerSet.hpp >+ dos2unix ./pwiz/utility/misc/IntegerSet.hpp >dos2unix: converting file ./pwiz/utility/misc/IntegerSet.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/VendorReaderTestHarness.hpp >+ dos2unix ./pwiz/utility/misc/VendorReaderTestHarness.hpp >dos2unix: converting file ./pwiz/utility/misc/VendorReaderTestHarness.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Base64.hpp >+ dos2unix ./pwiz/utility/misc/Base64.hpp >dos2unix: converting file ./pwiz/utility/misc/Base64.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/almost_equal.hpp >+ dos2unix ./pwiz/utility/misc/almost_equal.hpp >dos2unix: converting file ./pwiz/utility/misc/almost_equal.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Timer.hpp >+ dos2unix ./pwiz/utility/misc/Timer.hpp >dos2unix: converting file ./pwiz/utility/misc/Timer.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Filesystem.hpp >+ dos2unix ./pwiz/utility/misc/Filesystem.hpp >dos2unix: converting file ./pwiz/utility/misc/Filesystem.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Std.hpp >+ dos2unix ./pwiz/utility/misc/Std.hpp >dos2unix: converting file ./pwiz/utility/misc/Std.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/ClickwrapPrompterTest.cpp >+ dos2unix ./pwiz/utility/misc/ClickwrapPrompterTest.cpp >dos2unix: converting file ./pwiz/utility/misc/ClickwrapPrompterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/mru_list_test.cpp >+ dos2unix ./pwiz/utility/misc/mru_list_test.cpp >dos2unix: converting file ./pwiz/utility/misc/mru_list_test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/endian.hpp >+ dos2unix ./pwiz/utility/misc/endian.hpp >dos2unix: converting file ./pwiz/utility/misc/endian.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/FailTest.cpp >+ dos2unix ./pwiz/utility/misc/FailTest.cpp >dos2unix: converting file ./pwiz/utility/misc/FailTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/SHA1_ostream.hpp >+ dos2unix ./pwiz/utility/misc/SHA1_ostream.hpp >dos2unix: converting file ./pwiz/utility/misc/SHA1_ostream.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/TabReader.cpp >+ dos2unix ./pwiz/utility/misc/TabReader.cpp >dos2unix: converting file ./pwiz/utility/misc/TabReader.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Container.hpp >+ dos2unix ./pwiz/utility/misc/Container.hpp >dos2unix: converting file ./pwiz/utility/misc/Container.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Filesystem.cpp >+ dos2unix ./pwiz/utility/misc/Filesystem.cpp >dos2unix: converting file ./pwiz/utility/misc/Filesystem.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/SHA1Calculator.cpp >+ dos2unix ./pwiz/utility/misc/SHA1Calculator.cpp >dos2unix: converting file ./pwiz/utility/misc/SHA1Calculator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/cpp_cli_utilities.hpp >+ dos2unix ./pwiz/utility/misc/cpp_cli_utilities.hpp >dos2unix: converting file ./pwiz/utility/misc/cpp_cli_utilities.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/almost_equal_test.cpp >+ dos2unix ./pwiz/utility/misc/almost_equal_test.cpp >dos2unix: converting file ./pwiz/utility/misc/almost_equal_test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/IterationListenerTest.cpp >+ dos2unix ./pwiz/utility/misc/IterationListenerTest.cpp >dos2unix: converting file ./pwiz/utility/misc/IterationListenerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/optimized_lexical_cast.hpp >+ dos2unix ./pwiz/utility/misc/optimized_lexical_cast.hpp >dos2unix: converting file ./pwiz/utility/misc/optimized_lexical_cast.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/VendorReaderTestHarness.cpp >+ dos2unix ./pwiz/utility/misc/VendorReaderTestHarness.cpp >dos2unix: converting file ./pwiz/utility/misc/VendorReaderTestHarness.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/ExceptionTest.cpp >+ dos2unix ./pwiz/utility/misc/ExceptionTest.cpp >dos2unix: converting file ./pwiz/utility/misc/ExceptionTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/IterationListener.hpp >+ dos2unix ./pwiz/utility/misc/IterationListener.hpp >dos2unix: converting file ./pwiz/utility/misc/IterationListener.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/MSIHandler.cpp >+ dos2unix ./pwiz/utility/misc/MSIHandler.cpp >dos2unix: converting file ./pwiz/utility/misc/MSIHandler.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/TabReaderTest.cpp >+ dos2unix ./pwiz/utility/misc/TabReaderTest.cpp >dos2unix: converting file ./pwiz/utility/misc/TabReaderTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/ClickwrapPrompter.cpp >+ dos2unix ./pwiz/utility/misc/ClickwrapPrompter.cpp >dos2unix: converting file ./pwiz/utility/misc/ClickwrapPrompter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/IntegerSetTest.cpp >+ dos2unix ./pwiz/utility/misc/IntegerSetTest.cpp >dos2unix: converting file ./pwiz/utility/misc/IntegerSetTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/virtual_map.hpp >+ dos2unix ./pwiz/utility/misc/virtual_map.hpp >dos2unix: converting file ./pwiz/utility/misc/virtual_map.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/SHA1_ostream_test.cpp >+ dos2unix ./pwiz/utility/misc/SHA1_ostream_test.cpp >dos2unix: converting file ./pwiz/utility/misc/SHA1_ostream_test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/FilesystemTest.cpp >+ dos2unix ./pwiz/utility/misc/FilesystemTest.cpp >dos2unix: converting file ./pwiz/utility/misc/FilesystemTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/random_access_compressed_ifstream.hpp >+ dos2unix ./pwiz/utility/misc/random_access_compressed_ifstream.hpp >dos2unix: converting file ./pwiz/utility/misc/random_access_compressed_ifstream.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Exception.hpp >+ dos2unix ./pwiz/utility/misc/Exception.hpp >dos2unix: converting file ./pwiz/utility/misc/Exception.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/mru_list.hpp >+ dos2unix ./pwiz/utility/misc/mru_list.hpp >dos2unix: converting file ./pwiz/utility/misc/mru_list.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/random_access_compressed_ifstream.cpp >+ dos2unix ./pwiz/utility/misc/random_access_compressed_ifstream.cpp >dos2unix: converting file ./pwiz/utility/misc/random_access_compressed_ifstream.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Once.hpp >+ dos2unix ./pwiz/utility/misc/Once.hpp >dos2unix: converting file ./pwiz/utility/misc/Once.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/IntegerSet.cpp >+ dos2unix ./pwiz/utility/misc/IntegerSet.cpp >dos2unix: converting file ./pwiz/utility/misc/IntegerSet.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/misc/Base64.cpp >+ dos2unix ./pwiz/utility/misc/Base64.cpp >dos2unix: converting file ./pwiz/utility/misc/Base64.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/filter/utilities/mexhat.hpp >+ dos2unix ./pwiz/utility/findmf/base/filter/utilities/mexhat.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/filter/utilities/mexhat.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/filter/utilities/gauss.hpp >+ dos2unix ./pwiz/utility/findmf/base/filter/utilities/gauss.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/filter/utilities/gauss.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/filter/utilities/preparedata.hpp >+ dos2unix ./pwiz/utility/findmf/base/filter/utilities/preparedata.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/filter/utilities/preparedata.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/filter/gaussfilter.hpp >+ dos2unix ./pwiz/utility/findmf/base/filter/gaussfilter.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/filter/gaussfilter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/filter/filterutilstest.cpp >+ dos2unix ./pwiz/utility/findmf/base/filter/filterutilstest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/filter/filterutilstest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/filter/gaussfiltertest.cpp >+ dos2unix ./pwiz/utility/findmf/base/filter/gaussfiltertest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/filter/gaussfiltertest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/filter/filter.hpp >+ dos2unix ./pwiz/utility/findmf/base/filter/filter.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/filter/filter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/base.hpp >+ dos2unix ./pwiz/utility/findmf/base/base/base.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/base.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/utilities/base.hpp >+ dos2unix ./pwiz/utility/findmf/base/base/utilities/base.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/utilities/base.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/utilities/interpolation.hpp >+ dos2unix ./pwiz/utility/findmf/base/base/utilities/interpolation.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/utilities/interpolation.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/scale.hpp >+ dos2unix ./pwiz/utility/findmf/base/base/scale.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/scale.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/basetest.cpp >+ dos2unix ./pwiz/utility/findmf/base/base/basetest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/basetest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/cumsum.hpp >+ dos2unix ./pwiz/utility/findmf/base/base/cumsum.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/cumsum.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/diff.hpp >+ dos2unix ./pwiz/utility/findmf/base/base/diff.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/diff.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/copyif.hpp >+ dos2unix ./pwiz/utility/findmf/base/base/copyif.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/copyif.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/cumsumtest.cpp >+ dos2unix ./pwiz/utility/findmf/base/base/cumsumtest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/cumsumtest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp >+ dos2unix ./pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/constants.hpp >+ dos2unix ./pwiz/utility/findmf/base/base/constants.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/constants.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/interpolate.hpp >+ dos2unix ./pwiz/utility/findmf/base/base/interpolate.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/interpolate.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/copy_iftest.cpp >+ dos2unix ./pwiz/utility/findmf/base/base/copy_iftest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/copy_iftest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/base/difftest.cpp >+ dos2unix ./pwiz/utility/findmf/base/base/difftest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/base/difftest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/breakspec.hpp >+ dos2unix ./pwiz/utility/findmf/base/resample/breakspec.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/breakspec.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp >+ dos2unix ./pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/convert2densetest.cpp >+ dos2unix ./pwiz/utility/findmf/base/resample/convert2densetest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/convert2densetest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/convert2dense.hpp >+ dos2unix ./pwiz/utility/findmf/base/resample/convert2dense.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/convert2dense.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/masscomparefunctors.hpp >+ dos2unix ./pwiz/utility/findmf/base/resample/masscomparefunctors.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/masscomparefunctors.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/bin1d.hpp >+ dos2unix ./pwiz/utility/findmf/base/resample/bin1d.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/bin1d.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/determinebinwidth.hpp >+ dos2unix ./pwiz/utility/findmf/base/resample/determinebinwidth.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/determinebinwidth.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/bucket1dtest.cpp >+ dos2unix ./pwiz/utility/findmf/base/resample/bucket1dtest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/bucket1dtest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/bucket1d.hpp >+ dos2unix ./pwiz/utility/findmf/base/resample/bucket1d.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/bucket1d.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/resample/determinbinwithtest.cpp >+ dos2unix ./pwiz/utility/findmf/base/resample/determinbinwithtest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/resample/determinbinwithtest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/ms/simplepicker.hpp >+ dos2unix ./pwiz/utility/findmf/base/ms/simplepicker.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/ms/simplepicker.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/ms/peakpickerqtof.hpp >+ dos2unix ./pwiz/utility/findmf/base/ms/peakpickerqtof.hpp >dos2unix: converting file ./pwiz/utility/findmf/base/ms/peakpickerqtof.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/findmf/base/ms/simplepickertest.cpp >+ dos2unix ./pwiz/utility/findmf/base/ms/simplepickertest.cpp >dos2unix: converting file ./pwiz/utility/findmf/base/ms/simplepickertest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/minimxml/XMLWriterTest.cpp >+ dos2unix ./pwiz/utility/minimxml/XMLWriterTest.cpp >dos2unix: converting file ./pwiz/utility/minimxml/XMLWriterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/minimxml/SAXParserTest.cpp >+ dos2unix ./pwiz/utility/minimxml/SAXParserTest.cpp >dos2unix: converting file ./pwiz/utility/minimxml/SAXParserTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/minimxml/XMLWriter.hpp >+ dos2unix ./pwiz/utility/minimxml/XMLWriter.hpp >dos2unix: converting file ./pwiz/utility/minimxml/XMLWriter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/minimxml/XMLWriter.cpp >+ dos2unix ./pwiz/utility/minimxml/XMLWriter.cpp >dos2unix: converting file ./pwiz/utility/minimxml/XMLWriter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/minimxml/SAXParser.hpp >+ dos2unix ./pwiz/utility/minimxml/SAXParser.hpp >dos2unix: converting file ./pwiz/utility/minimxml/SAXParser.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/minimxml/SAXParser.cpp >+ dos2unix ./pwiz/utility/minimxml/SAXParser.cpp >dos2unix: converting file ./pwiz/utility/minimxml/SAXParser.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/Chemistry.cpp >+ dos2unix ./pwiz/utility/chemistry/Chemistry.cpp >dos2unix: converting file ./pwiz/utility/chemistry/Chemistry.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp >+ dos2unix ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp >dos2unix: converting file ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/ChemistryTest.cpp >+ dos2unix ./pwiz/utility/chemistry/ChemistryTest.cpp >dos2unix: converting file ./pwiz/utility/chemistry/ChemistryTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/parse_isotopes.cpp >+ dos2unix ./pwiz/utility/chemistry/parse_isotopes.cpp >dos2unix: converting file ./pwiz/utility/chemistry/parse_isotopes.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/IsotopeTable.cpp >+ dos2unix ./pwiz/utility/chemistry/IsotopeTable.cpp >dos2unix: converting file ./pwiz/utility/chemistry/IsotopeTable.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/IsotopeCalculator.hpp >+ dos2unix ./pwiz/utility/chemistry/IsotopeCalculator.hpp >dos2unix: converting file ./pwiz/utility/chemistry/IsotopeCalculator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/Ion.hpp >+ dos2unix ./pwiz/utility/chemistry/Ion.hpp >dos2unix: converting file ./pwiz/utility/chemistry/Ion.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/IsotopeCalculatorTest.cpp >+ dos2unix ./pwiz/utility/chemistry/IsotopeCalculatorTest.cpp >dos2unix: converting file ./pwiz/utility/chemistry/IsotopeCalculatorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/IsotopeTableTest.cpp >+ dos2unix ./pwiz/utility/chemistry/IsotopeTableTest.cpp >dos2unix: converting file ./pwiz/utility/chemistry/IsotopeTableTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/Chemistry.hpp >+ dos2unix ./pwiz/utility/chemistry/Chemistry.hpp >dos2unix: converting file ./pwiz/utility/chemistry/Chemistry.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/ChemistryData.cpp >+ dos2unix ./pwiz/utility/chemistry/ChemistryData.cpp >dos2unix: converting file ./pwiz/utility/chemistry/ChemistryData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/ChemistryData.hpp >+ dos2unix ./pwiz/utility/chemistry/ChemistryData.hpp >dos2unix: converting file ./pwiz/utility/chemistry/ChemistryData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp >+ dos2unix ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp >dos2unix: converting file ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/MZTolerance.cpp >+ dos2unix ./pwiz/utility/chemistry/MZTolerance.cpp >dos2unix: converting file ./pwiz/utility/chemistry/MZTolerance.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp >+ dos2unix ./pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp >dos2unix: converting file ./pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/MZToleranceTest.cpp >+ dos2unix ./pwiz/utility/chemistry/MZToleranceTest.cpp >dos2unix: converting file ./pwiz/utility/chemistry/MZToleranceTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/iso.cpp >+ dos2unix ./pwiz/utility/chemistry/iso.cpp >dos2unix: converting file ./pwiz/utility/chemistry/iso.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/IsotopeCalculator.cpp >+ dos2unix ./pwiz/utility/chemistry/IsotopeCalculator.cpp >dos2unix: converting file ./pwiz/utility/chemistry/IsotopeCalculator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/IsotopeTable.hpp >+ dos2unix ./pwiz/utility/chemistry/IsotopeTable.hpp >dos2unix: converting file ./pwiz/utility/chemistry/IsotopeTable.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/utility/chemistry/MZTolerance.hpp >+ dos2unix ./pwiz/utility/chemistry/MZTolerance.hpp >dos2unix: converting file ./pwiz/utility/chemistry/MZTolerance.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureModeler.hpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureModeler.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureModeler.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFitter.hpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFitter.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFitter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFinder.hpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFinder.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFinder.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakelGrower.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakelGrower.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakelGrower.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFinder.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFinder.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFinder.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/MZRTField.hpp >+ dos2unix ./pwiz/analysis/peakdetect/MZRTField.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/MZRTField.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakExtractorTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakExtractorTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakExtractorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakelGrower.hpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakelGrower.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakelGrower.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureModelerTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureModelerTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureModelerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakelPicker.hpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakelPicker.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakelPicker.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFinderTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFinderTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFinderTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFitterTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFitterTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFitterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/MZRTField.cpp >+ dos2unix ./pwiz/analysis/peakdetect/MZRTField.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/MZRTField.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFamilyDetector.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFamilyDetector.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFamilyDetector.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakExtractor.hpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakExtractor.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakExtractor.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFamilyDetector.hpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFamilyDetector.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFamilyDetector.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakelGrowerTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakelGrowerTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakelGrowerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/NoiseTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/NoiseTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/NoiseTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureModeler.cpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureModeler.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureModeler.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakExtractor.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakExtractor.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakExtractor.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/Noise.cpp >+ dos2unix ./pwiz/analysis/peakdetect/Noise.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/Noise.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFitter.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFitter.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFitter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/MZRTFieldTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/MZRTFieldTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/MZRTFieldTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureDetector.hpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureDetector.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureDetector.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakelPickerTest.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakelPickerTest.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakelPickerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/msextract.cpp >+ dos2unix ./pwiz/analysis/peakdetect/msextract.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/msextract.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/Noise.hpp >+ dos2unix ./pwiz/analysis/peakdetect/Noise.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/Noise.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp >+ dos2unix ./pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp >dos2unix: converting file ./pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peakdetect/PeakelPicker.cpp >+ dos2unix ./pwiz/analysis/peakdetect/PeakelPicker.cpp >dos2unix: converting file ./pwiz/analysis/peakdetect/PeakelPicker.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxTypes.hpp >+ dos2unix ./pwiz/analysis/demux/DemuxTypes.hpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxTypes.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxSolverTest.cpp >+ dos2unix ./pwiz/analysis/demux/DemuxSolverTest.cpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxSolverTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/MatrixIO.cpp >+ dos2unix ./pwiz/analysis/demux/MatrixIO.cpp >dos2unix: converting file ./pwiz/analysis/demux/MatrixIO.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxSolver.cpp >+ dos2unix ./pwiz/analysis/demux/DemuxSolver.cpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxSolver.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/EnumConstantNotPresentException.hpp >+ dos2unix ./pwiz/analysis/demux/EnumConstantNotPresentException.hpp >dos2unix: converting file ./pwiz/analysis/demux/EnumConstantNotPresentException.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxDebugReader.hpp >+ dos2unix ./pwiz/analysis/demux/DemuxDebugReader.hpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxDebugReader.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/MSXDemultiplexer.cpp >+ dos2unix ./pwiz/analysis/demux/MSXDemultiplexer.cpp >dos2unix: converting file ./pwiz/analysis/demux/MSXDemultiplexer.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/IPrecursorMaskCodec.hpp >+ dos2unix ./pwiz/analysis/demux/IPrecursorMaskCodec.hpp >dos2unix: converting file ./pwiz/analysis/demux/IPrecursorMaskCodec.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/OverlapDemultiplexer.cpp >+ dos2unix ./pwiz/analysis/demux/OverlapDemultiplexer.cpp >dos2unix: converting file ./pwiz/analysis/demux/OverlapDemultiplexer.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp >+ dos2unix ./pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp >dos2unix: converting file ./pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/CubicHermiteSpline.cpp >+ dos2unix ./pwiz/analysis/demux/CubicHermiteSpline.cpp >dos2unix: converting file ./pwiz/analysis/demux/CubicHermiteSpline.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/IDemultiplexer.hpp >+ dos2unix ./pwiz/analysis/demux/IDemultiplexer.hpp >dos2unix: converting file ./pwiz/analysis/demux/IDemultiplexer.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/PrecursorMaskCodec.hpp >+ dos2unix ./pwiz/analysis/demux/PrecursorMaskCodec.hpp >dos2unix: converting file ./pwiz/analysis/demux/PrecursorMaskCodec.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxDebugWriter.cpp >+ dos2unix ./pwiz/analysis/demux/DemuxDebugWriter.cpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxDebugWriter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/OverlapDemultiplexer.hpp >+ dos2unix ./pwiz/analysis/demux/OverlapDemultiplexer.hpp >dos2unix: converting file ./pwiz/analysis/demux/OverlapDemultiplexer.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/IInterpolation.hpp >+ dos2unix ./pwiz/analysis/demux/IInterpolation.hpp >dos2unix: converting file ./pwiz/analysis/demux/IInterpolation.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/MSXDemultiplexer.hpp >+ dos2unix ./pwiz/analysis/demux/MSXDemultiplexer.hpp >dos2unix: converting file ./pwiz/analysis/demux/MSXDemultiplexer.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxHelpers.cpp >+ dos2unix ./pwiz/analysis/demux/DemuxHelpers.cpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxHelpers.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxHelpersTest.cpp >+ dos2unix ./pwiz/analysis/demux/DemuxHelpersTest.cpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxHelpersTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/FSDemux.cpp >+ dos2unix ./pwiz/analysis/demux/FSDemux.cpp >dos2unix: converting file ./pwiz/analysis/demux/FSDemux.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/SpectrumPeakExtractor.cpp >+ dos2unix ./pwiz/analysis/demux/SpectrumPeakExtractor.cpp >dos2unix: converting file ./pwiz/analysis/demux/SpectrumPeakExtractor.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/MatrixIOTest.cpp >+ dos2unix ./pwiz/analysis/demux/MatrixIOTest.cpp >dos2unix: converting file ./pwiz/analysis/demux/MatrixIOTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxDebugWriter.hpp >+ dos2unix ./pwiz/analysis/demux/DemuxDebugWriter.hpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxDebugWriter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp >+ dos2unix ./pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxHelpers.hpp >+ dos2unix ./pwiz/analysis/demux/DemuxHelpers.hpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxHelpers.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/CubicHermiteSplineTest.cpp >+ dos2unix ./pwiz/analysis/demux/CubicHermiteSplineTest.cpp >dos2unix: converting file ./pwiz/analysis/demux/CubicHermiteSplineTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxDebugReader.cpp >+ dos2unix ./pwiz/analysis/demux/DemuxDebugReader.cpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxDebugReader.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/DemuxSolver.hpp >+ dos2unix ./pwiz/analysis/demux/DemuxSolver.hpp >dos2unix: converting file ./pwiz/analysis/demux/DemuxSolver.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/SpectrumPeakExtractor.hpp >+ dos2unix ./pwiz/analysis/demux/SpectrumPeakExtractor.hpp >dos2unix: converting file ./pwiz/analysis/demux/SpectrumPeakExtractor.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/MatrixIO.hpp >+ dos2unix ./pwiz/analysis/demux/MatrixIO.hpp >dos2unix: converting file ./pwiz/analysis/demux/MatrixIO.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/CubicHermiteSpline.hpp >+ dos2unix ./pwiz/analysis/demux/CubicHermiteSpline.hpp >dos2unix: converting file ./pwiz/analysis/demux/CubicHermiteSpline.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/demux/PrecursorMaskCodec.cpp >+ dos2unix ./pwiz/analysis/demux/PrecursorMaskCodec.cpp >dos2unix: converting file ./pwiz/analysis/demux/PrecursorMaskCodec.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp >dos2unix: Binary symbol 0x02 found at line 42 >dos2unix: Skipping binary file ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/ThresholdFilter.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/ThresholdFilter.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/ThresholdFilter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/ThresholdFilter.cpp >+ dos2unix ./pwiz/analysis/spectrum_processing/ThresholdFilter.cpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/ThresholdFilter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp >+ dos2unix ./pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp >dos2unix: converting file ./pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideID_flat.cpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideID_flat.cpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideID_flat.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideID_flat.hpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideID_flat.hpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideID_flat.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideID_pepXML.cpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideID_pepXML.cpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideID_pepXML.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideID.hpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideID.hpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideID.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideIDMap.hpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideIDMap.hpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideIDMap.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideIDMap.cpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideIDMap.cpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideIDMap.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideIDMapTest.cpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideIDMapTest.cpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideIDMapTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideID_pepXML.hpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideID_pepXML.hpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideID_pepXML.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/peptideid/PeptideID_flatTest.cpp >+ dos2unix ./pwiz/analysis/peptideid/PeptideID_flatTest.cpp >dos2unix: converting file ./pwiz/analysis/peptideid/PeptideID_flatTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/Version.cpp >+ dos2unix ./pwiz/analysis/Version.cpp >dos2unix: converting file ./pwiz/analysis/Version.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/Version.hpp >+ dos2unix ./pwiz/analysis/Version.hpp >dos2unix: converting file ./pwiz/analysis/Version.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/proteome_processing/ProteinListFactory.cpp >+ dos2unix ./pwiz/analysis/proteome_processing/ProteinListFactory.cpp >dos2unix: converting file ./pwiz/analysis/proteome_processing/ProteinListFactory.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp >+ dos2unix ./pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp >dos2unix: converting file ./pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp >+ dos2unix ./pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp >dos2unix: converting file ./pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/proteome_processing/ProteinListFactory.hpp >+ dos2unix ./pwiz/analysis/proteome_processing/ProteinListFactory.hpp >dos2unix: converting file ./pwiz/analysis/proteome_processing/ProteinListFactory.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/proteome_processing/ProteinList_Filter.cpp >+ dos2unix ./pwiz/analysis/proteome_processing/ProteinList_Filter.cpp >dos2unix: converting file ./pwiz/analysis/proteome_processing/ProteinList_Filter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp >+ dos2unix ./pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp >dos2unix: converting file ./pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp >+ dos2unix ./pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp >dos2unix: converting file ./pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp >+ dos2unix ./pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp >dos2unix: converting file ./pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/proteome_processing/ProteinList_Filter.hpp >+ dos2unix ./pwiz/analysis/proteome_processing/ProteinList_Filter.hpp >dos2unix: converting file ./pwiz/analysis/proteome_processing/ProteinList_Filter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/MagnitudeLorentzian.hpp >+ dos2unix ./pwiz/analysis/frequency/MagnitudeLorentzian.hpp >dos2unix: converting file ./pwiz/analysis/frequency/MagnitudeLorentzian.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/ParametrizedFunctionTest.cpp >+ dos2unix ./pwiz/analysis/frequency/ParametrizedFunctionTest.cpp >dos2unix: converting file ./pwiz/analysis/frequency/ParametrizedFunctionTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp >+ dos2unix ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp >dos2unix: converting file ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp >+ dos2unix ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp >dos2unix: converting file ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp >+ dos2unix ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp >dos2unix: converting file ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/PeakDetectorNaive.cpp >+ dos2unix ./pwiz/analysis/frequency/PeakDetectorNaive.cpp >dos2unix: converting file ./pwiz/analysis/frequency/PeakDetectorNaive.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp >+ dos2unix ./pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp >dos2unix: converting file ./pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp >+ dos2unix ./pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp >dos2unix: converting file ./pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp >+ dos2unix ./pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp >dos2unix: converting file ./pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp >+ dos2unix ./pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp >dos2unix: converting file ./pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/ParameterEstimator.cpp >+ dos2unix ./pwiz/analysis/frequency/ParameterEstimator.cpp >dos2unix: converting file ./pwiz/analysis/frequency/ParameterEstimator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/MagnitudeLorentzian.cpp >+ dos2unix ./pwiz/analysis/frequency/MagnitudeLorentzian.cpp >dos2unix: converting file ./pwiz/analysis/frequency/MagnitudeLorentzian.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/TruncatedLorentzianTest.cpp >+ dos2unix ./pwiz/analysis/frequency/TruncatedLorentzianTest.cpp >dos2unix: converting file ./pwiz/analysis/frequency/TruncatedLorentzianTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp >+ dos2unix ./pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp >dos2unix: converting file ./pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp >+ dos2unix ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp >dos2unix: converting file ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp >+ dos2unix ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp >dos2unix: converting file ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp >+ dos2unix ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp >dos2unix: converting file ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/DerivativeTest.hpp >+ dos2unix ./pwiz/analysis/frequency/DerivativeTest.hpp >dos2unix: converting file ./pwiz/analysis/frequency/DerivativeTest.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/PeakDetector.hpp >+ dos2unix ./pwiz/analysis/frequency/PeakDetector.hpp >dos2unix: converting file ./pwiz/analysis/frequency/PeakDetector.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp >+ dos2unix ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp >dos2unix: converting file ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp >+ dos2unix ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp >dos2unix: converting file ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/TruncatedLorentzian.cpp >+ dos2unix ./pwiz/analysis/frequency/TruncatedLorentzian.cpp >dos2unix: converting file ./pwiz/analysis/frequency/TruncatedLorentzian.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/PeakDetectorNaive.hpp >+ dos2unix ./pwiz/analysis/frequency/PeakDetectorNaive.hpp >dos2unix: converting file ./pwiz/analysis/frequency/PeakDetectorNaive.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp >+ dos2unix ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp >dos2unix: converting file ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp >+ dos2unix ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp >dos2unix: converting file ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/FrequencyEstimator.hpp >+ dos2unix ./pwiz/analysis/frequency/FrequencyEstimator.hpp >dos2unix: converting file ./pwiz/analysis/frequency/FrequencyEstimator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/TruncatedLorentzian.hpp >+ dos2unix ./pwiz/analysis/frequency/TruncatedLorentzian.hpp >dos2unix: converting file ./pwiz/analysis/frequency/TruncatedLorentzian.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp >+ dos2unix ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp >dos2unix: converting file ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/ParametrizedFunction.hpp >+ dos2unix ./pwiz/analysis/frequency/ParametrizedFunction.hpp >dos2unix: converting file ./pwiz/analysis/frequency/ParametrizedFunction.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp >+ dos2unix ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp >dos2unix: converting file ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp >+ dos2unix ./pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp >dos2unix: converting file ./pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp >+ dos2unix ./pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp >dos2unix: converting file ./pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp >+ dos2unix ./pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp >dos2unix: converting file ./pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/frequency/ParameterEstimator.hpp >+ dos2unix ./pwiz/analysis/frequency/ParameterEstimator.hpp >dos2unix: converting file ./pwiz/analysis/frequency/ParameterEstimator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RunSummary.cpp >+ dos2unix ./pwiz/analysis/passive/RunSummary.cpp >dos2unix: converting file ./pwiz/analysis/passive/RunSummary.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/MetadataReporter.hpp >+ dos2unix ./pwiz/analysis/passive/MetadataReporter.hpp >dos2unix: converting file ./pwiz/analysis/passive/MetadataReporter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RegionSlice.hpp >+ dos2unix ./pwiz/analysis/passive/RegionSlice.hpp >dos2unix: converting file ./pwiz/analysis/passive/RegionSlice.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/MSDataAnalyzer.cpp >+ dos2unix ./pwiz/analysis/passive/MSDataAnalyzer.cpp >dos2unix: converting file ./pwiz/analysis/passive/MSDataAnalyzer.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/MSDataCacheTest.cpp >+ dos2unix ./pwiz/analysis/passive/MSDataCacheTest.cpp >dos2unix: converting file ./pwiz/analysis/passive/MSDataCacheTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/MSDataAnalyzer.hpp >+ dos2unix ./pwiz/analysis/passive/MSDataAnalyzer.hpp >dos2unix: converting file ./pwiz/analysis/passive/MSDataAnalyzer.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/SpectrumBinaryData.hpp >+ dos2unix ./pwiz/analysis/passive/SpectrumBinaryData.hpp >dos2unix: converting file ./pwiz/analysis/passive/SpectrumBinaryData.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/MSDataCache.cpp >+ dos2unix ./pwiz/analysis/passive/MSDataCache.cpp >dos2unix: converting file ./pwiz/analysis/passive/MSDataCache.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RegionAnalyzer.cpp >+ dos2unix ./pwiz/analysis/passive/RegionAnalyzer.cpp >dos2unix: converting file ./pwiz/analysis/passive/RegionAnalyzer.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/PepXMLCat.cpp >+ dos2unix ./pwiz/analysis/passive/PepXMLCat.cpp >dos2unix: converting file ./pwiz/analysis/passive/PepXMLCat.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/SpectrumBinaryData.cpp >+ dos2unix ./pwiz/analysis/passive/SpectrumBinaryData.cpp >dos2unix: converting file ./pwiz/analysis/passive/SpectrumBinaryData.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/SpectrumTable.hpp >+ dos2unix ./pwiz/analysis/passive/SpectrumTable.hpp >dos2unix: converting file ./pwiz/analysis/passive/SpectrumTable.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RegionTIC.cpp >+ dos2unix ./pwiz/analysis/passive/RegionTIC.cpp >dos2unix: converting file ./pwiz/analysis/passive/RegionTIC.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RegionSIC.cpp >+ dos2unix ./pwiz/analysis/passive/RegionSIC.cpp >dos2unix: converting file ./pwiz/analysis/passive/RegionSIC.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RunSummary.hpp >+ dos2unix ./pwiz/analysis/passive/RunSummary.hpp >dos2unix: converting file ./pwiz/analysis/passive/RunSummary.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/TabularConfig.cpp >+ dos2unix ./pwiz/analysis/passive/TabularConfig.cpp >dos2unix: converting file ./pwiz/analysis/passive/TabularConfig.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RegionAnalyzer.hpp >+ dos2unix ./pwiz/analysis/passive/RegionAnalyzer.hpp >dos2unix: converting file ./pwiz/analysis/passive/RegionAnalyzer.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RegionSIC.hpp >+ dos2unix ./pwiz/analysis/passive/RegionSIC.hpp >dos2unix: converting file ./pwiz/analysis/passive/RegionSIC.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/TabularConfig.hpp >+ dos2unix ./pwiz/analysis/passive/TabularConfig.hpp >dos2unix: converting file ./pwiz/analysis/passive/TabularConfig.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/MSDataCache.hpp >+ dos2unix ./pwiz/analysis/passive/MSDataCache.hpp >dos2unix: converting file ./pwiz/analysis/passive/MSDataCache.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/SpectrumTable.cpp >+ dos2unix ./pwiz/analysis/passive/SpectrumTable.cpp >dos2unix: converting file ./pwiz/analysis/passive/SpectrumTable.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/MetadataReporter.cpp >+ dos2unix ./pwiz/analysis/passive/MetadataReporter.cpp >dos2unix: converting file ./pwiz/analysis/passive/MetadataReporter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RegionTIC.hpp >+ dos2unix ./pwiz/analysis/passive/RegionTIC.hpp >dos2unix: converting file ./pwiz/analysis/passive/RegionTIC.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/MSDataAnalyzerTest.cpp >+ dos2unix ./pwiz/analysis/passive/MSDataAnalyzerTest.cpp >dos2unix: converting file ./pwiz/analysis/passive/MSDataAnalyzerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/RegionSlice.cpp >+ dos2unix ./pwiz/analysis/passive/RegionSlice.cpp >dos2unix: converting file ./pwiz/analysis/passive/RegionSlice.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/passive/PepXMLCat.hpp >+ dos2unix ./pwiz/analysis/passive/PepXMLCat.hpp >dos2unix: converting file ./pwiz/analysis/passive/PepXMLCat.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp >+ dos2unix ./pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp >dos2unix: converting file ./pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/CwtPeakDetector.cpp >+ dos2unix ./pwiz/analysis/common/CwtPeakDetector.cpp >dos2unix: converting file ./pwiz/analysis/common/CwtPeakDetector.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/WhittakerSmoother.cpp >+ dos2unix ./pwiz/analysis/common/WhittakerSmoother.cpp >dos2unix: converting file ./pwiz/analysis/common/WhittakerSmoother.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/CwtPeakDetectorTest.cpp >+ dos2unix ./pwiz/analysis/common/CwtPeakDetectorTest.cpp >dos2unix: converting file ./pwiz/analysis/common/CwtPeakDetectorTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/CwtPeakDetector.hpp >+ dos2unix ./pwiz/analysis/common/CwtPeakDetector.hpp >dos2unix: converting file ./pwiz/analysis/common/CwtPeakDetector.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/SavitzkyGolaySmoother.cpp >+ dos2unix ./pwiz/analysis/common/SavitzkyGolaySmoother.cpp >dos2unix: converting file ./pwiz/analysis/common/SavitzkyGolaySmoother.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/ExtraZeroSamplesFilter.hpp >+ dos2unix ./pwiz/analysis/common/ExtraZeroSamplesFilter.hpp >dos2unix: converting file ./pwiz/analysis/common/ExtraZeroSamplesFilter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/ZeroSampleFiller.hpp >+ dos2unix ./pwiz/analysis/common/ZeroSampleFiller.hpp >dos2unix: converting file ./pwiz/analysis/common/ZeroSampleFiller.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp >+ dos2unix ./pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp >dos2unix: converting file ./pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/ZeroSampleFiller.cpp >+ dos2unix ./pwiz/analysis/common/ZeroSampleFiller.cpp >dos2unix: converting file ./pwiz/analysis/common/ZeroSampleFiller.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp >+ dos2unix ./pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp >dos2unix: converting file ./pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/WhittakerSmootherTest.cpp >+ dos2unix ./pwiz/analysis/common/WhittakerSmootherTest.cpp >dos2unix: converting file ./pwiz/analysis/common/WhittakerSmootherTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/PeakDetector.hpp >+ dos2unix ./pwiz/analysis/common/PeakDetector.hpp >dos2unix: converting file ./pwiz/analysis/common/PeakDetector.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/LocalMaximumPeakDetector.cpp >+ dos2unix ./pwiz/analysis/common/LocalMaximumPeakDetector.cpp >dos2unix: converting file ./pwiz/analysis/common/LocalMaximumPeakDetector.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/ExtraZeroSamplesFilter.cpp >+ dos2unix ./pwiz/analysis/common/ExtraZeroSamplesFilter.cpp >dos2unix: converting file ./pwiz/analysis/common/ExtraZeroSamplesFilter.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/LocalMaximumPeakDetector.hpp >+ dos2unix ./pwiz/analysis/common/LocalMaximumPeakDetector.hpp >dos2unix: converting file ./pwiz/analysis/common/LocalMaximumPeakDetector.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/ZeroSampleFillerTest.cpp >+ dos2unix ./pwiz/analysis/common/ZeroSampleFillerTest.cpp >dos2unix: converting file ./pwiz/analysis/common/ZeroSampleFillerTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/Smoother.hpp >+ dos2unix ./pwiz/analysis/common/Smoother.hpp >dos2unix: converting file ./pwiz/analysis/common/Smoother.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/SavitzkyGolaySmoother.hpp >+ dos2unix ./pwiz/analysis/common/SavitzkyGolaySmoother.hpp >dos2unix: converting file ./pwiz/analysis/common/SavitzkyGolaySmoother.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/DataFilter.hpp >+ dos2unix ./pwiz/analysis/common/DataFilter.hpp >dos2unix: converting file ./pwiz/analysis/common/DataFilter.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/analysis/common/WhittakerSmoother.hpp >+ dos2unix ./pwiz/analysis/common/WhittakerSmoother.hpp >dos2unix: converting file ./pwiz/analysis/common/WhittakerSmoother.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/Version.cpp >+ dos2unix ./pwiz/Version.cpp >dos2unix: converting file ./pwiz/Version.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz/Version.hpp >+ dos2unix ./pwiz/Version.hpp >dos2unix: converting file ./pwiz/Version.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./doc/dox/mainpage.hpp >+ dos2unix ./doc/dox/mainpage.hpp >dos2unix: converting file ./doc/dox/mainpage.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/commandline/msconvert.cpp >+ dos2unix ./pwiz_tools/commandline/msconvert.cpp >dos2unix: converting file ./pwiz_tools/commandline/msconvert.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/commandline/idconvert.cpp >+ dos2unix ./pwiz_tools/commandline/idconvert.cpp >dos2unix: converting file ./pwiz_tools/commandline/idconvert.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/commandline/pepcat.cpp >+ dos2unix ./pwiz_tools/commandline/pepcat.cpp >dos2unix: converting file ./pwiz_tools/commandline/pepcat.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/examples/hello_analyzer.cpp >+ dos2unix ./pwiz_tools/examples/hello_analyzer.cpp >dos2unix: converting file ./pwiz_tools/examples/hello_analyzer.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/examples/hello_msdata.cpp >+ dos2unix ./pwiz_tools/examples/hello_msdata.cpp >dos2unix: converting file ./pwiz_tools/examples/hello_msdata.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/examples/write_proteome_example_files.cpp >+ dos2unix ./pwiz_tools/examples/write_proteome_example_files.cpp >dos2unix: converting file ./pwiz_tools/examples/write_proteome_example_files.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/examples/txt2mzml.cpp >+ dos2unix ./pwiz_tools/examples/txt2mzml.cpp >dos2unix: converting file ./pwiz_tools/examples/txt2mzml.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/examples/write_traml_example_files.cpp >+ dos2unix ./pwiz_tools/examples/write_traml_example_files.cpp >dos2unix: converting file ./pwiz_tools/examples/write_traml_example_files.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/examples/write_mzid_example_files.cpp >+ dos2unix ./pwiz_tools/examples/write_mzid_example_files.cpp >dos2unix: converting file ./pwiz_tools/examples/write_mzid_example_files.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/examples/mscat.cpp >+ dos2unix ./pwiz_tools/examples/mscat.cpp >dos2unix: converting file ./pwiz_tools/examples/mscat.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/examples/hello_analyzer_2.cpp >+ dos2unix ./pwiz_tools/examples/hello_analyzer_2.cpp >dos2unix: converting file ./pwiz_tools/examples/hello_analyzer_2.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/examples/write_example_files.cpp >+ dos2unix ./pwiz_tools/examples/write_example_files.cpp >dos2unix: converting file ./pwiz_tools/examples/write_example_files.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/common/FullReaderList.hpp >+ dos2unix ./pwiz_tools/common/FullReaderList.hpp >dos2unix: converting file ./pwiz_tools/common/FullReaderList.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/common/MSDataAnalyzerApplicationTest.cpp >+ dos2unix ./pwiz_tools/common/MSDataAnalyzerApplicationTest.cpp >dos2unix: converting file ./pwiz_tools/common/MSDataAnalyzerApplicationTest.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/common/MSDataAnalyzerApplication.hpp >+ dos2unix ./pwiz_tools/common/MSDataAnalyzerApplication.hpp >dos2unix: converting file ./pwiz_tools/common/MSDataAnalyzerApplication.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./pwiz_tools/common/MSDataAnalyzerApplication.cpp >+ dos2unix ./pwiz_tools/common/MSDataAnalyzerApplication.cpp >dos2unix: converting file ./pwiz_tools/common/MSDataAnalyzerApplication.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/windows.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/windows.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/windows.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/stackstring.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/stackstring.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/stackstring.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/config.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/config.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/config.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/cstdio.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/cstdio.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/cstdio.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/cstdlib.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/cstdlib.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/cstdlib.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/system.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/system.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/system.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/convert.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/convert.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/convert.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/filebuf.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/filebuf.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/filebuf.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/iostream.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/iostream.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/iostream.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/args.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/args.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/args.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/fstream.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/fstream.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/fstream.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/nowide/cenv.hpp >+ dos2unix ./libraries/boost_aux/boost/nowide/cenv.hpp >dos2unix: converting file ./libraries/boost_aux/boost/nowide/cenv.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/utility/mutexed_singleton.hpp >+ dos2unix ./libraries/boost_aux/boost/utility/mutexed_singleton.hpp >dos2unix: converting file ./libraries/boost_aux/boost/utility/mutexed_singleton.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/utility/detail/singleton_manager.hpp >+ dos2unix ./libraries/boost_aux/boost/utility/detail/singleton_manager.hpp >dos2unix: converting file ./libraries/boost_aux/boost/utility/detail/singleton_manager.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/utility/detail/restricted.hpp >+ dos2unix ./libraries/boost_aux/boost/utility/detail/restricted.hpp >dos2unix: converting file ./libraries/boost_aux/boost/utility/detail/restricted.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/utility/detail/member_dereference.hpp >+ dos2unix ./libraries/boost_aux/boost/utility/detail/member_dereference.hpp >dos2unix: converting file ./libraries/boost_aux/boost/utility/detail/member_dereference.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/utility/thread_specific_singleton.hpp >+ dos2unix ./libraries/boost_aux/boost/utility/thread_specific_singleton.hpp >dos2unix: converting file ./libraries/boost_aux/boost/utility/thread_specific_singleton.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/utility/singleton.hpp >+ dos2unix ./libraries/boost_aux/boost/utility/singleton.hpp >dos2unix: converting file ./libraries/boost_aux/boost/utility/singleton.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/interprocess/detail/win32_api.hpp >+ dos2unix ./libraries/boost_aux/boost/interprocess/detail/win32_api.hpp >dos2unix: converting file ./libraries/boost_aux/boost/interprocess/detail/win32_api.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/enum/base.hpp >+ dos2unix ./libraries/boost_aux/boost/enum/base.hpp >dos2unix: converting file ./libraries/boost_aux/boost/enum/base.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/enum/bitfield.hpp >+ dos2unix ./libraries/boost_aux/boost/enum/bitfield.hpp >dos2unix: converting file ./libraries/boost_aux/boost/enum/bitfield.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/enum/macros.hpp >+ dos2unix ./libraries/boost_aux/boost/enum/macros.hpp >dos2unix: converting file ./libraries/boost_aux/boost/enum/macros.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/enum/iterator.hpp >+ dos2unix ./libraries/boost_aux/boost/enum/iterator.hpp >dos2unix: converting file ./libraries/boost_aux/boost/enum/iterator.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/enum.hpp >+ dos2unix ./libraries/boost_aux/boost/enum.hpp >dos2unix: converting file ./libraries/boost_aux/boost/enum.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/foreach_field.hpp >+ dos2unix ./libraries/boost_aux/boost/foreach_field.hpp >dos2unix: converting file ./libraries/boost_aux/boost/foreach_field.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/iostreams/filter/base64.hpp >+ dos2unix ./libraries/boost_aux/boost/iostreams/filter/base64.hpp >dos2unix: converting file ./libraries/boost_aux/boost/iostreams/filter/base64.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp >+ dos2unix ./libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp >dos2unix: converting file ./libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/scan_cvs_path.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/scan_cvs_path.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/scan_cvs_path.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/copy_path.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/copy_path.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/copy_path.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/file_types.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/file_types.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/file_types.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/fileview.hpp >+ dos2unix ./libraries/boost_aux/tools/bcp/fileview.hpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/fileview.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/licence_info.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/licence_info.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/licence_info.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/bcp_imp.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/bcp_imp.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/bcp_imp.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/add_path.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/add_path.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/add_path.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/path_operations.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/path_operations.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/path_operations.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/add_dependent_lib.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/add_dependent_lib.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/add_dependent_lib.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/fileview.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/fileview.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/fileview.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/bcp_imp.hpp >+ dos2unix ./libraries/boost_aux/tools/bcp/bcp_imp.hpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/bcp_imp.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/output_licence_info.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/output_licence_info.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/output_licence_info.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/bcp.hpp >+ dos2unix ./libraries/boost_aux/tools/bcp/bcp.hpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/bcp.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/main.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/main.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/main.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/scan_licence.cpp >+ dos2unix ./libraries/boost_aux/tools/bcp/scan_licence.cpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/scan_licence.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/tools/bcp/licence_info.hpp >+ dos2unix ./libraries/boost_aux/tools/bcp/licence_info.hpp >dos2unix: converting file ./libraries/boost_aux/tools/bcp/licence_info.hpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/libs/nowide/src/iostream.cpp >+ dos2unix ./libraries/boost_aux/libs/nowide/src/iostream.cpp >dos2unix: converting file ./libraries/boost_aux/libs/nowide/src/iostream.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/libs/thread/src/win32/tss_pe.cpp >+ dos2unix ./libraries/boost_aux/libs/thread/src/win32/tss_pe.cpp >dos2unix: converting file ./libraries/boost_aux/libs/thread/src/win32/tss_pe.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/boost_aux/libs/thread/src/win32/tss_pe-before_1_44.cpp >+ dos2unix ./libraries/boost_aux/libs/thread/src/win32/tss_pe-before_1_44.cpp >dos2unix: converting file ./libraries/boost_aux/libs/thread/src/win32/tss_pe-before_1_44.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/libsvm-3.0/svm.cpp >+ dos2unix ./libraries/libsvm-3.0/svm.cpp >dos2unix: converting file ./libraries/libsvm-3.0/svm.cpp to Unix format... >+ for i in `find . -type f \( -name "*.cpp" -o -name "*.hpp" \)` >+ chmod a-x ./libraries/libsvm-3.0/svm-model2code.cpp >+ dos2unix ./libraries/libsvm-3.0/svm-model2code.cpp >dos2unix: converting file ./libraries/libsvm-3.0/svm-model2code.cpp to Unix format... >+ rm -f libraries/libsvm-3.0/svm.h >+ sed -e 's|-I"./libraries/libsvm-3.0"||g' -i autotools/Makefile.am >+ sed -e 's|AM_CONFIG_HEADER|AM_CONFIG_HEADERS|g' -i autotools/aclocal.m4 >+ sed -e 's|AC_PROG_LIBTOOL|LT_INIT|g' -i autotools/configure.ac autotools/configure >+ pushd autotools >~/build/BUILD/pwiz/autotools ~/build/BUILD/pwiz >+ autoreconf -ivf >autoreconf: Entering directory `.' >autoreconf: configure.ac: not using Gettext >autoreconf: running: aclocal --force -I . >autoreconf: configure.ac: tracing >autoreconf: running: libtoolize --copy --force >libtoolize: putting auxiliary files in '.'. >libtoolize: copying file './ltmain.sh' >libtoolize: putting macros in '.'. >libtoolize: copying file './libtool.m4' >libtoolize: copying file './ltoptions.m4' >libtoolize: copying file './ltsugar.m4' >libtoolize: copying file './ltversion.m4' >libtoolize: copying file './lt~obsolete.m4' >libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and >libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. >autoreconf: running: /usr/bin/autoconf --force >autoreconf: configure.ac: not using Autoheader >autoreconf: running: automake --add-missing --copy --force-missing >configure.ac:11: installing './compile' >configure.ac:6: installing './missing' >Makefile.am: installing './depcomp' >autoreconf: Leaving directory `.' >+ popd >~/build/BUILD/pwiz >+ exit 0 >Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.8XoH7l >+ umask 022 >+ cd /builddir/build/BUILD >+ cd pwiz >+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64' >+ export CFLAGS >+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64' >+ export CXXFLAGS >+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -I/usr/lib64/gfortran/modules' >+ export FFLAGS >+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -I/usr/lib64/gfortran/modules' >+ export FCFLAGS >+ LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' >+ export LDFLAGS >+ '[' 1 = 1 ']' >+++ dirname autotools/configure >++ find autotools -name config.guess -o -name config.sub >+ for i in $(find $(dirname autotools/configure) -name config.guess -o -name config.sub) >++ basename autotools/config.sub >+ '[' -f /usr/lib/rpm/redhat/config.sub ']' >+ /usr/bin/rm -f autotools/config.sub >++ basename autotools/config.sub >+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub autotools/config.sub >'/usr/lib/rpm/redhat/config.sub' -> 'autotools/config.sub' >+ for i in $(find $(dirname autotools/configure) -name config.guess -o -name config.sub) >++ basename autotools/config.guess >+ '[' -f /usr/lib/rpm/redhat/config.guess ']' >+ /usr/bin/rm -f autotools/config.guess >++ basename autotools/config.guess >+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess autotools/config.guess >'/usr/lib/rpm/redhat/config.guess' -> 'autotools/config.guess' >+ '[' 1 = 1 ']' >+ '[' x '!=' x-specs=/usr/lib/rpm/redhat/redhat-hardened-ld ']' >++ find . -name ltmain.sh >+ for i in $(find . -name ltmain.sh) >+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags=-specs=/usr/lib/rpm/redhat/redhat-hardened-ld~' ./autotools/ltmain.sh >+ autotools/configure --build=ppc64-redhat-linux-gnu --host=ppc64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static-boost --with-boost >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /usr/bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking build system type... powerpc64-redhat-linux-gnu >checking host system type... powerpc64-redhat-linux-gnu >checking how to print strings... printf >checking for style of include used by make... GNU >checking for ppc64-redhat-linux-gnu-gcc... no >checking for gcc... gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether gcc accepts -g... yes >checking for gcc option to accept ISO C89... none needed >checking whether gcc understands -c and -o together... yes >checking dependency style of gcc... none >checking for a sed that does not truncate output... /usr/bin/sed >checking for grep that handles long lines and -e... /usr/bin/grep >checking for egrep... /usr/bin/grep -E >checking for fgrep... /usr/bin/grep -F >checking for ld used by gcc... /usr/bin/ld >checking if the linker (/usr/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert powerpc64-redhat-linux-gnu file names to powerpc64-redhat-linux-gnu format... func_convert_file_noop >checking how to convert powerpc64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/bin/ld option to reload object files... -r >checking for ppc64-redhat-linux-gnu-objdump... no >checking for objdump... objdump >checking how to recognize dependent libraries... pass_all >checking for ppc64-redhat-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for ppc64-redhat-linux-gnu-ar... no >checking for ar... ar >checking for archiver @FILE support... @ >checking for ppc64-redhat-linux-gnu-strip... no >checking for strip... strip >checking for ppc64-redhat-linux-gnu-ranlib... no >checking for ranlib... ranlib >checking command to parse /usr/bin/nm -B output from gcc object... ok >checking for sysroot... no >checking for a working dd... /usr/bin/dd >checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 >checking for ppc64-redhat-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if gcc supports -fno-rtti -fno-exceptions... no >checking for gcc option to produce PIC... -fPIC -DPIC >checking if gcc PIC flag -fPIC -DPIC works... yes >checking if gcc static flag -static works... no >checking if gcc supports -c -o file.o... yes >checking if gcc supports -c -o file.o... (cached) yes >checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for gawk... (cached) gawk >checking for ppc64-redhat-linux-gnu-g++... no >checking for ppc64-redhat-linux-gnu-c++... no >checking for ppc64-redhat-linux-gnu-gpp... no >checking for ppc64-redhat-linux-gnu-aCC... no >checking for ppc64-redhat-linux-gnu-CC... no >checking for ppc64-redhat-linux-gnu-cxx... no >checking for ppc64-redhat-linux-gnu-cc++... no >checking for ppc64-redhat-linux-gnu-cl.exe... no >checking for ppc64-redhat-linux-gnu-FCC... no >checking for ppc64-redhat-linux-gnu-KCC... no >checking for ppc64-redhat-linux-gnu-RCC... no >checking for ppc64-redhat-linux-gnu-xlC_r... no >checking for ppc64-redhat-linux-gnu-xlC... no >checking for g++... g++ >checking whether we are using the GNU C++ compiler... yes >checking whether g++ accepts -g... yes >checking dependency style of g++... none >checking how to run the C++ preprocessor... g++ -E >checking for ld used by g++... /usr/bin/ld >checking if the linker (/usr/bin/ld) is GNU ld... yes >checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes >checking for g++ option to produce PIC... -fPIC -DPIC >checking if g++ PIC flag -fPIC -DPIC works... yes >checking if g++ static flag -static works... no >checking if g++ supports -c -o file.o... yes >checking if g++ supports -c -o file.o... (cached) yes >checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for ppc64-redhat-linux-gnu-gcc... gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether gcc accepts -g... (cached) yes >checking for gcc option to accept ISO C89... (cached) none needed >checking whether gcc understands -c and -o together... (cached) yes >checking dependency style of gcc... (cached) none >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking float.h usability... yes >checking float.h presence... yes >checking for float.h... yes >checking for inttypes.h... (cached) yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking for memory.h... (cached) yes >checking netinet/in.h usability... yes >checking netinet/in.h presence... yes >checking for netinet/in.h... yes >checking for stdint.h... (cached) yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking sys/ioctl.h usability... yes >checking sys/ioctl.h presence... yes >checking for sys/ioctl.h... yes >checking for unistd.h... (cached) yes >checking for stdbool.h that conforms to C99... yes >checking for _Bool... yes >checking for inline... inline >checking for int32_t... yes >checking for int64_t... yes >checking for off_t... yes >checking for C/C++ restrict keyword... __restrict >checking for size_t... yes >checking for uint32_t... yes >checking for uint64_t... yes >checking for ptrdiff_t... yes >checking for error_at_line... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking whether time.h and sys/time.h may both be included... yes >checking for sys/time.h... yes >checking for unistd.h... (cached) yes >checking for alarm... yes >checking for working mktime... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible realloc... yes >checking for atexit... yes >checking for floor... no >checking for memmove... yes >checking for memset... yes >checking for mkdir... yes >checking for modf... yes >checking for pow... no >checking for sqrt... no >checking for strcasecmp... yes >checking for strchr... yes >checking for strdup... yes >checking for strerror... yes >checking for strpbrk... yes >checking for strrchr... yes >checking for strstr... yes >checking for strtol... yes >checking for strtoul... yes >checking for strtoull... yes >checking for Boost headers version >= 1.43.0... yes >checking for Boost's header version... 1_63 >checking for the flags needed to use pthreads... -pthread >checking for the toolset name used by Boost for g++... configure: WARNING: could not figure out which toolset name to use for g++ >checking boost/system/error_code.hpp usability... yes >checking boost/system/error_code.hpp presence... yes >checking for boost/system/error_code.hpp... yes >checking for the Boost system library... yes >checking boost/thread.hpp usability... yes >checking boost/thread.hpp presence... yes >checking for boost/thread.hpp... yes >checking for the Boost thread library... (cached) yes >checking for boost/system/error_code.hpp... (cached) yes >checking for the Boost system library... (cached) yes >checking boost/filesystem/path.hpp usability... yes >checking boost/filesystem/path.hpp presence... yes >checking for boost/filesystem/path.hpp... yes >checking for the Boost filesystem library... (cached) yes >checking boost/regex.hpp usability... yes >checking boost/regex.hpp presence... yes >checking for boost/regex.hpp... yes >checking for the Boost regex library... (cached) yes >checking boost/archive/text_oarchive.hpp usability... yes >checking boost/archive/text_oarchive.hpp presence... yes >checking for boost/archive/text_oarchive.hpp... yes >checking for the Boost serialization library... (cached) yes >checking for boost/system/error_code.hpp... (cached) yes >checking for the Boost system library... (cached) yes >checking boost/iostreams/device/file_descriptor.hpp usability... yes >checking boost/iostreams/device/file_descriptor.hpp presence... yes >checking for boost/iostreams/device/file_descriptor.hpp... yes >checking for the Boost iostreams library... (cached) yes >checking boost/date_time/posix_time/posix_time.hpp usability... yes >checking boost/date_time/posix_time/posix_time.hpp presence... yes >checking for boost/date_time/posix_time/posix_time.hpp... yes >checking for the Boost date_time library... (cached) yes >checking boost/program_options.hpp usability... yes >checking boost/program_options.hpp presence... yes >checking for boost/program_options.hpp... yes >checking for the Boost program_options library... (cached) yes >checking for boost/system/error_code.hpp... (cached) yes >checking for the Boost system library... (cached) yes >checking boost/chrono.hpp usability... yes >checking boost/chrono.hpp presence... yes >checking for boost/chrono.hpp... yes >checking for the Boost chrono library... (cached) yes >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: executing depfiles commands >config.status: executing libtool commands >+ sed -i -e 's! -shared ! -Wl,--as-needed\0!g' libtool >+ make -j4 'CPPFLAGS= -pthread -I/usr/include/libsvm' 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now' 'LDFLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -Wl,--as-needed -L/usr/lib64 -lsvm' BOOST_LDPATH=/usr/lib64 >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/data/msdata/Serializer_mzXML.lo pwiz/data/msdata/Serializer_mzXML.cpp >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/data/msdata/MSData.lo pwiz/data/msdata/MSData.cpp >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/data/tradata/DefaultReaderList.lo pwiz/data/tradata/DefaultReaderList.cpp >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/data/msdata/SpectrumList_mzXML.lo pwiz/data/msdata/SpectrumList_mzXML.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/tradata/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/tradata/.libs/DefaultReaderList.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/SpectrumList_mzXML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_mzXML.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/MSData.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/MSData.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/Serializer_mzXML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_mzXML.o >pwiz/data/tradata/DefaultReaderList.cpp:69:8: warning: 'std::__cxx11::string pwiz::tradata::{anonymous}::GetXMLRootElementFromFile(const string&)' defined but not used [-Wunused-function] > string GetXMLRootElementFromFile(const string& filepath) > ^~~~~~~~~~~~~~~~~~~~~~~~~ >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/Serializer_mzXML.cpp -o pwiz/data/msdata/Serializer_mzXML.o >/dev/null 2>&1 >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/SpectrumList_mzXML.cpp -o pwiz/data/msdata/SpectrumList_mzXML.o >/dev/null 2>&1 >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/MSData.cpp -o pwiz/data/msdata/MSData.o >/dev/null 2>&1 >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/tradata/DefaultReaderList.cpp -o pwiz/data/tradata/DefaultReaderList.o >/dev/null 2>&1 >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/data/msdata/Index_mzML.lo pwiz/data/msdata/Index_mzML.cpp >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/utility/chemistry/MZTolerance.lo pwiz/utility/chemistry/MZTolerance.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/Index_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Index_mzML.o >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/utility/chemistry/MZTolerance.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/MZTolerance.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRefine.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/utility/chemistry/MZTolerance.cpp -o pwiz/utility/chemistry/MZTolerance.o >/dev/null 2>&1 >pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp: In constructor 'pwiz::analysis::SpectrumList_PrecursorRefine::Impl::Impl(const pwiz::msdata::MSData&)': >pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp:53:10: warning: 'pwiz::analysis::SpectrumList_PrecursorRefine::Impl::targetMassAnalyzerType' will be initialized after [-Wreorder] > CVID targetMassAnalyzerType; > ^~~~~~~~~~~~~~~~~~~~~~ >pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp:52:17: warning: 'pwiz::analysis::MSDataCache pwiz::analysis::SpectrumList_PrecursorRefine::Impl::cache' [-Wreorder] > MSDataCache cache; > ^~~~~ >pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp:59:1: warning: when initialized here [-Wreorder] > SpectrumList_PrecursorRefine::Impl::Impl(const MSData& msd) > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/Index_mzML.cpp -o pwiz/data/msdata/Index_mzML.o >/dev/null 2>&1 >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.o >/dev/null 2>&1 >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/data/msdata/Serializer_mzML.lo pwiz/data/msdata/Serializer_mzML.cpp >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/Serializer_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_mzML.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZRefiner.o >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o >/dev/null 2>&1 >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/Serializer_mzML.cpp -o pwiz/data/msdata/Serializer_mzML.o >/dev/null 2>&1 >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp: In constructor 'pwiz::analysis::SpectrumList_MZRefiner::Impl::Impl(pwiz::util::IntegerSet, pwiz::analysis::CVConditionalFilter::CVConditionalFilterConfigData)': >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp:1476:56: warning: 'pwiz::analysis::SpectrumList_MZRefiner::Impl::filterConfigData_' will be initialized after [-Wreorder] > CVConditionalFilter::CVConditionalFilterConfigData filterConfigData_; > ^~~~~~~~~~~~~~~~~ >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp:1474:9: warning: 'int pwiz::analysis::SpectrumList_MZRefiner::Impl::bad_' [-Wreorder] > int bad_, badByScore_, badByMassError_; > ^~~~ >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp:1457:5: warning: when initialized here [-Wreorder] > Impl(util::IntegerSet p_msLevelsToRefine, CVConditionalFilter::CVConditionalFilterConfigData filterConfigData) : msLevelsToRefine(p_msLevelsToRefine), filterConfigData_(filterConfigData), bad_(0), badByScore_(0), badByMassError_(0) {} > ^~~~ >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp: In member function 'void pwiz::analysis::SpectrumList_MZRefiner::Impl::processIdentData(const pwiz::msdata::MSData&, pwiz::util::IterationListenerRegistry*)': >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp:1839:30: warning: variable 'cleaned' set but not used [-Wunused-but-set-variable] > bool cleaned = false; > ^~~~~~~ >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp:1840:30: warning: variable 'worked' set but not used [-Wunused-but-set-variable] > bool worked = false; > ^~~~~~ >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp: In member function 'void pwiz::analysis::SpectrumList_MZRefiner::Impl::fragmentationIonPpmErrors(const string&, const int&, const SpectrumPtr&)': >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp:2050:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] > for (int i = 0; i < mapping.size(); i++) > ~~^~~~~~~~~~~~~~~~ >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp:2052:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] > while (j < mzArray->data.size() && i > mzArray->data[j]) > ~~^~~~~~~~~~~~~~~~~~~~~~ >pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp:2194:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] > if (highSearch > mzArray->data.size()) > ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp >In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29:0, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: >./pwiz/data/misc/FrequencyData.hpp:157:10: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > std::auto_ptr<Impl> impl_; > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from ./pwiz/data/misc/FrequencyData.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26:0: >pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:53:17: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > static std::auto_ptr<FrequencyEstimatorPhysicalModel> create(const Config& config); > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from ./pwiz/data/misc/FrequencyData.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:27:0: >pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > static std::auto_ptr<TruncatedLorentzianEstimator> create(); > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from ./pwiz/data/misc/FrequencyData.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/analysis/peakdetect/PeakFinder.lo pwiz/analysis/peakdetect/PeakFinder.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakPicker.o >pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:60:1: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > auto_ptr<FrequencyEstimatorPhysicalModel> > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from ./pwiz/data/misc/FrequencyData.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In static member function 'static std::auto_ptr<pwiz::frequency::FrequencyEstimatorPhysicalModel> pwiz::frequency::FrequencyEstimatorPhysicalModel::create(const pwiz::frequency::FrequencyEstimatorPhysicalModel::Config&)': >pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:63:12: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > return auto_ptr<FrequencyEstimatorPhysicalModel>( > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from ./pwiz/data/misc/FrequencyData.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In member function 'virtual pwiz::data::peakdata::Peak FrequencyEstimatorPhysicalModelImpl::estimate(const FrequencyData&, const Peak&) const': >pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:100:5: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > auto_ptr<TruncatedLorentzianEstimator> estimator = TruncatedLorentzianEstimator::create(); > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from ./pwiz/data/misc/FrequencyData.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, > from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.o >/dev/null 2>&1 >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/peakdetect/PeakFinder.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFinder.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o >/dev/null 2>&1 >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/peakdetect/PeakFinder.cpp -o pwiz/analysis/peakdetect/PeakFinder.o >/dev/null 2>&1 >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.o >/dev/null 2>&1 >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/data/msdata/IO.lo pwiz/data/msdata/IO.cpp >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/analysis/peakdetect/PeakFamilyDetector.lo pwiz/analysis/peakdetect/PeakFamilyDetector.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/IO.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/IO.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/peakdetect/PeakFamilyDetector.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetector.o >pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerBinaryDataArray::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': >pwiz/data/msdata/IO.cpp:1726:17: warning: this 'if' clause does not guard... [-Wmisleading-indentation] > if (!dataProcessingRef.empty()) > ^~ >pwiz/data/msdata/IO.cpp:1729:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' > getAttribute(attributes, "encodedLength", encodedLength_, NoXMLUnescape); > ^~~~~~~~~~~~ >pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': >pwiz/data/msdata/IO.cpp:2019:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] > else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") > ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': >pwiz/data/msdata/IO.cpp:2730:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] > else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || > ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/data/identdata/DelimWriter.lo pwiz/data/identdata/DelimWriter.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/peakdetect/PeakFamilyDetector.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetector.o >/dev/null 2>&1 >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/identdata/DelimWriter.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/DelimWriter.o >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/utility/misc/SHA1.lo pwiz/utility/misc/SHA1.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/identdata/DelimWriter.cpp -o pwiz/data/identdata/DelimWriter.o >/dev/null 2>&1 >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/analysis/demux/MSXDemultiplexer.lo pwiz/analysis/demux/MSXDemultiplexer.cpp >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/utility/misc/SHA1.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/SHA1.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/demux/MSXDemultiplexer.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/MSXDemultiplexer.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/utility/misc/SHA1.cpp -o pwiz/utility/misc/SHA1.o >/dev/null 2>&1 >/bin/sh ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10422\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp >In file included from pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23:0, > from pwiz/analysis/demux/IDemultiplexer.hpp:23, > from pwiz/analysis/demux/MSXDemultiplexer.hpp:23, > from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: >pwiz/analysis/demux/DemuxTypes.hpp:24:10: fatal error: Eigen: No such file or directory > #include <Eigen> > ^~~~~~~ >compilation terminated. >make: *** [Makefile:4991: pwiz/analysis/demux/MSXDemultiplexer.lo] Error 1 >make: *** Waiting for unfinished jobs.... >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/data/msdata/IO.cpp -o pwiz/data/msdata/IO.o >/dev/null 2>&1 >In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:30:0, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: >./pwiz/data/misc/FrequencyData.hpp:157:10: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > std::auto_ptr<Impl> impl_; > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26:0: >pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > static std::auto_ptr<TruncatedLorentzianEstimator> create(); > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:27:0: >pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > static std::auto_ptr<ParameterEstimator> create(const Function& function, > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:62:15: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > PWIZ_API_DECL auto_ptr<TruncatedLorentzianEstimator> TruncatedLorentzianEstimator::create() > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In static member function 'static std::auto_ptr<pwiz::frequency::TruncatedLorentzianEstimator> pwiz::frequency::TruncatedLorentzianEstimator::create()': >pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:64:12: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > return auto_ptr<TruncatedLorentzianEstimator>(new TruncatedLorentzianEstimatorImpl); > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In member function 'virtual pwiz::frequency::TruncatedLorentzianParameters pwiz::frequency::TruncatedLorentzianEstimatorImpl::iteratedEstimate(const pwiz::data::FrequencyData&, const pwiz::frequency::TruncatedLorentzianParameters&, int) const': >pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:146:5: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] > auto_ptr<ParameterEstimator> pe = > ^~~~~~~~ >In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, > from /usr/include/c++/7/locale:43, > from /usr/include/c++/7/iomanip:43, > from ./pwiz/data/misc/SampleDatum.hpp:30, > from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, > from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: >/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ >libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10422\" "-DPACKAGE_STRING=\"libpwiz 3.0.10422\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10422\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -pthread -I/usr/include/libsvm -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -Wl,-z,relro -Wl,-z,now -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.o >/dev/null 2>&1 >error: Bad exit status from /var/tmp/rpm-tmp.8XoH7l (%build) >RPM build errors: > Bad exit status from /var/tmp/rpm-tmp.8XoH7l (%build) >Child return code was: 1 >EXCEPTION: [Error()] >Traceback (most recent call last): > File "/usr/lib/python3.5/site-packages/mockbuild/trace_decorator.py", line 89, in trace > result = func(*args, **kw) > File "/usr/lib/python3.5/site-packages/mockbuild/util.py", line 578, in do > raise exception.Error("Command failed. See logs for output.\n # %s" % (command,), child.returncode) >mockbuild.exception.Error: Command failed. See logs for output. > # bash --login -c /usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/libpwiz.spec
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