Attachment 1443015 Details for Bug 1556134 – build.log

build.log

build.log (text/plain), 9.44 KB, created by Fedora Release Engineering on 2018-05-28 08:56:39 UTC

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Creator: Fedora Release Engineering

Created: 2018-05-28 08:56:39 UTC

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>Mock Version: 1.3.4
>Mock Version: 1.3.4
>ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64 --nodeps /builddir/build/SPECS/primer3.spec'], chrootPath='/var/lib/mock/f29-build-12553813-917929/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fffaf8a1f98>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
>Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64 --nodeps /builddir/build/SPECS/primer3.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
>Building target platforms: ppc64
>Building for target ppc64
>Wrote: /builddir/build/SRPMS/primer3-2.3.6-10.fc29.src.rpm
>Child return code was: 0
>ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/primer3.spec'], chrootPath='/var/lib/mock/f29-build-12553813-917929/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fffaf8a1f98>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
>Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/primer3.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
>Building target platforms: ppc64
>Building for target ppc64
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.mbPgEO
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd /builddir/build/BUILD
>+ rm -rf primer3-2.3.6
>+ /usr/bin/gzip -dc /builddir/build/SOURCES/primer3-src-2.3.6.tar.gz
>+ /usr/bin/tar -xof -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ cd primer3-2.3.6
>+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ chmod -x src/Makefile src/Makefile.OSX src/dpal.c src/dpal.h src/format_output.c src/format_output.h src/gpl-2.0.txt src/humrep_and_simple.txt src/libprimer3.c src/libprimer3.h src/long_seq_tm_test_main.c src/ntdpal_main.c src/oligotm.c src/oligotm.h src/oligotm_main.c src/p3_seq_lib.c src/p3_seq_lib.h src/paranoid_tests.sh src/primer3_boulder_main.c src/primer3_config src/print_boulder.c src/print_boulder.h src/read_boulder.c src/read_boulder.h src/release_notes.txt src/thal.c src/thal.h src/thal_main.c
>+ chmod +x src/primer3_config
>+ sed -i -e 's|CFLAGS  = $(CC_OPTS) $(O_OPTS)|CFLAGS  = $(CC_OPTS) $(O_OPTS) $(INIT_CFLAGS)|' src/Makefile
>+ sed -i 's/\r//' primer3web_v0_4_0_default_settings.txt
>+ sed -i -e 's|/opt/primer3_config|/etc/primer3_config|' src/release_notes.txt src/thal_main.c src/primer3_boulder_main.c primer3_manual.htm
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.6BbrMi
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd primer3-2.3.6
>+ cd src
>+ export 'INIT_CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection'
>+ INIT_CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection'
>+ make -j4
>g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection  primer3_boulder_main.c
>g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection  -o format_output.o format_output.c
>g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection  -o read_boulder.o read_boulder.c
>g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection  -o print_boulder.o print_boulder.c
>g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated  -o libprimer3.o libprimer3.c
>g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -o p3_seq_lib.o p3_seq_lib.c
>g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection  -o dpal_primer.o dpal.c
>dpal.c: In function 'void print_align(const unsigned char*, const unsigned char*, int (*)[1600][3], int, int, const dpal_args*)':
>dpal.c:1036:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
>     for(i=j;i<j+70;i++) fprintf(stderr, "%c",sy[i]); fprintf(stderr,"\n");
>     ^~~
>dpal.c:1036:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
>     for(i=j;i<j+70;i++) fprintf(stderr, "%c",sy[i]); fprintf(stderr,"\n");
>                                                      ^~~~~~~
>g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -ffloat-store  -o thal_primer.o thal.c
>thal.c: In function 'void thal(const unsigned char*, const unsigned char*, const thal_args*, thal_results*)':
>thal.c:426:16: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
>    if ('\0' == oligo_f) {
>                ^~~~~~~
>thal.c:431:16: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
>    if ('\0' == oligo_r) {
>                ^~~~~~~
>thal.c: In function 'void tableStartATS(double, double (*)[5])':
>thal.c:1198:4: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
>    for (i = 0; i < 5; ++i)
>    ^~~
>thal.c:1201:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
>      atpS[0][3] = atpS[3][0] = atp_value;
>      ^~~~
>thal.c: In function 'void tableStartATH(double, double (*)[5])':
>thal.c:1210:4: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
>    for (i = 0; i < 5; ++i)
>    ^~~
>thal.c:1214:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
>      atpH[0][3] = atpH[3][0] = atp_value;
>      ^~~~
>make: *** [Makefile:192: thal_primer.o] Error 1
>make: *** Waiting for unfinished jobs....
>RPM build errors:
>error: Bad exit status from /var/tmp/rpm-tmp.6BbrMi (%build)
>    Bad exit status from /var/tmp/rpm-tmp.6BbrMi (%build)
>Child return code was: 1
>EXCEPTION: [Error()]
>Traceback (most recent call last):
>  File "/usr/lib/python3.6/site-packages/mockbuild/trace_decorator.py", line 89, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python3.6/site-packages/mockbuild/util.py", line 582, in do
>    raise exception.Error("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>mockbuild.exception.Error: Command failed. See logs for output.
> # bash --login -c /usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/primer3.spec

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Attachments on bug 1556134: 1443015 | 1443016 | 1443017