Attachment 1444593 Details for Bug 1555493 – build.log

build.log

build.log (text/plain), 4.42 KB, created by Fedora Release Engineering on 2018-05-28 22:22:23 UTC

(hide)

Description:

Filename:

MIME Type:

Creator: Fedora Release Engineering

Created: 2018-05-28 22:22:23 UTC

Size: 4.42 KB

patch

obsolete

>Mock Version: 1.3.4
>Mock Version: 1.3.4
>ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-BSgenome.spec'], chrootPath='/var/lib/mock/f29-build-12560700-918688/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fff7dcf1f98>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
>Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-BSgenome.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
>Building target platforms: noarch
>Building for target noarch
>Wrote: /builddir/build/SRPMS/R-BSgenome-1.38.0-4.fc29.src.rpm
>Child return code was: 0
>ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-BSgenome.spec'], chrootPath='/var/lib/mock/f29-build-12560700-918688/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fff7dcf1f98>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
>Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-BSgenome.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
>Building target platforms: noarch
>Building for target noarch
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.bjsZUI
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd /builddir/build/BUILD
>+ rm -rf BSgenome
>+ /usr/bin/mkdir -p BSgenome
>+ cd BSgenome
>+ /usr/bin/gzip -dc /builddir/build/SOURCES/BSgenome_1.38.0.tar.gz
>+ /usr/bin/tar -xof -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.q2v7JE
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd BSgenome
>+ exit 0
>Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.6f8lzA
>+ umask 022
>+ cd /builddir/build/BUILD
>+ '[' /builddir/build/BUILDROOT/R-BSgenome-1.38.0-4.fc29.noarch '!=' / ']'
>+ rm -rf /builddir/build/BUILDROOT/R-BSgenome-1.38.0-4.fc29.noarch
>++ dirname /builddir/build/BUILDROOT/R-BSgenome-1.38.0-4.fc29.noarch
>+ mkdir -p /builddir/build/BUILDROOT
>+ mkdir /builddir/build/BUILDROOT/R-BSgenome-1.38.0-4.fc29.noarch
>+ cd BSgenome
>+ rm -rf /builddir/build/BUILDROOT/R-BSgenome-1.38.0-4.fc29.noarch
>+ mkdir -p /builddir/build/BUILDROOT/R-BSgenome-1.38.0-4.fc29.noarch/usr/share/R/library
>+ R CMD INSTALL BSgenome -l /builddir/build/BUILDROOT/R-BSgenome-1.38.0-4.fc29.noarch/usr/share/R/library
>* installing *source* package 'BSgenome' ...
>** R
>** inst
>** byte-compile and prepare package for lazy loading
>Error in rematchDefinition(definition, fdef, mnames, fnames, signature) : 
>  methods can add arguments to the generic 'seqinfo<-' only if '...' is an argument to the generic
>Error : unable to load R code in package 'BSgenome'
>ERROR: lazy loading failed for package 'BSgenome'
>* removing '/builddir/build/BUILDROOT/R-BSgenome-1.38.0-4.fc29.noarch/usr/share/R/library/BSgenome'
>error: Bad exit status from /var/tmp/rpm-tmp.6f8lzA (%install)
>    Bad exit status from /var/tmp/rpm-tmp.6f8lzA (%install)
>RPM build errors:
>Child return code was: 1
>EXCEPTION: [Error()]
>Traceback (most recent call last):
>  File "/usr/lib/python3.6/site-packages/mockbuild/trace_decorator.py", line 89, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python3.6/site-packages/mockbuild/util.py", line 582, in do
>    raise exception.Error("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>mockbuild.exception.Error: Command failed. See logs for output.
> # bash --login -c /usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-BSgenome.spec

Actions: View

Attachments on bug 1555493: 1444593 | 1444597 | 1444599