Attachment 1461843 Details for Bug 1603945 – build.log

build.log

build.log (text/plain), 16.18 KB, created by Mohan Boddu on 2018-07-19 19:36:31 UTC

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Creator: Mohan Boddu

Created: 2018-07-19 19:36:31 UTC

Size: 16.18 KB

patch

obsolete

>Mock Version: 1.3.4
>Mock Version: 1.3.4
>ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'], chrootPath='/var/lib/mock/f29-build-13000707-948836/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fff8aa51f98>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
>Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
>Building target platforms: ppc64
>Building for target ppc64
>Wrote: /builddir/build/SRPMS/fastx_toolkit-0.0.14-20.fc29.src.rpm
>Child return code was: 0
>ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'], chrootPath='/var/lib/mock/f29-build-13000707-948836/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fff8aa51f98>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
>Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
>Building target platforms: ppc64
>Building for target ppc64
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.NXssY0
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd /builddir/build/BUILD
>+ rm -rf fastx_toolkit-0.0.14
>+ /usr/bin/bzip2 -dc /builddir/build/SOURCES/fastx_toolkit-0.0.14.tar.bz2
>+ /usr/bin/tar -xof -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ cd fastx_toolkit-0.0.14
>+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
>Patch #0 (fastx_toolkit-gcc47.patch):
>patching file src/libfastx/sequence_alignment.h
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.uomdbE
>+ echo 'Patch #0 (fastx_toolkit-gcc47.patch):'
>+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .fastx_toolkit-gcc47.patch --fuzz=0
>+ exit 0
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd fastx_toolkit-0.0.14
>+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection'
>+ export CFLAGS
>+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection'
>+ export CXXFLAGS
>+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
>+ export FFLAGS
>+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
>+ export FCFLAGS
>+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
>+ export LDFLAGS
>+ '[' 1 = 1 ']'
>+++ dirname ./configure
>++ find . -name config.guess -o -name config.sub
>+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
>++ basename ./config/config.guess
>+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
>+ /usr/bin/rm -f ./config/config.guess
>++ basename ./config/config.guess
>+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config/config.guess
>'/usr/lib/rpm/redhat/config.guess' -> './config/config.guess'
>+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
>++ basename ./config/config.sub
>+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
>+ /usr/bin/rm -f ./config/config.sub
>++ basename ./config/config.sub
>+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config/config.sub
>'/usr/lib/rpm/redhat/config.sub' -> './config/config.sub'
>+ '[' 1 = 1 ']'
>+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
>++ find . -name ltmain.sh
>+ for i in $(find . -name ltmain.sh)
>+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./config/ltmain.sh
>+ ./configure --build=ppc64-redhat-linux-gnu --host=ppc64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
>checking for a BSD-compatible install... /usr/bin/install -c
>checking whether build environment is sane... yes
>checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
>checking for gawk... gawk
>checking whether make sets $(MAKE)... yes
>checking whether make supports nested variables... yes
>checking for ppc64-redhat-linux-gnu-gcc... no
>checking for gcc... gcc
>checking whether the C compiler works... yes
>checking for C compiler default output file name... a.out
>checking for suffix of executables... 
>checking whether we are cross compiling... no
>checking for suffix of object files... o
>checking whether we are using the GNU C compiler... yes
>checking whether gcc accepts -g... yes
>checking for gcc option to accept ISO C89... none needed
>checking whether gcc understands -c and -o together... yes
>checking for style of include used by make... GNU
>checking dependency style of gcc... none
>checking for ppc64-redhat-linux-gnu-g++... no
>checking for ppc64-redhat-linux-gnu-c++... no
>checking for ppc64-redhat-linux-gnu-gpp... no
>checking for ppc64-redhat-linux-gnu-aCC... no
>checking for ppc64-redhat-linux-gnu-CC... no
>checking for ppc64-redhat-linux-gnu-cxx... no
>checking for ppc64-redhat-linux-gnu-cc++... no
>checking for ppc64-redhat-linux-gnu-cl.exe... no
>checking for ppc64-redhat-linux-gnu-FCC... no
>checking for ppc64-redhat-linux-gnu-KCC... no
>checking for ppc64-redhat-linux-gnu-RCC... no
>checking for ppc64-redhat-linux-gnu-xlC_r... no
>checking for ppc64-redhat-linux-gnu-xlC... no
>checking for g++... no
>checking for c++... no
>checking for gpp... no
>checking for aCC... no
>checking for CC... no
>checking for cxx... no
>checking for cc++... no
>checking for cl.exe... no
>checking for FCC... no
>checking for KCC... no
>checking for RCC... no
>checking for xlC_r... no
>checking for xlC... no
>checking whether we are using the GNU C++ compiler... no
>checking whether g++ accepts -g... no
>checking dependency style of g++... none
>checking build system type... powerpc64-redhat-linux-gnu
>checking host system type... powerpc64-redhat-linux-gnu
>checking for a sed that does not truncate output... /usr/bin/sed
>checking for grep that handles long lines and -e... /usr/bin/grep
>checking for egrep... /usr/bin/grep -E
>checking for fgrep... /usr/bin/grep -F
>checking for ld used by gcc... /usr/bin/ld
>checking if the linker (/usr/bin/ld) is GNU ld... yes
>checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
>checking the name lister (/usr/bin/nm -B) interface... BSD nm
>checking whether ln -s works... yes
>checking the maximum length of command line arguments... 1572864
>checking whether the shell understands some XSI constructs... yes
>checking whether the shell understands "+="... yes
>checking for /usr/bin/ld option to reload object files... -r
>checking for ppc64-redhat-linux-gnu-objdump... no
>checking for objdump... objdump
>checking how to recognize dependent libraries... pass_all
>checking for ppc64-redhat-linux-gnu-ar... no
>checking for ar... ar
>checking for ppc64-redhat-linux-gnu-strip... no
>checking for strip... strip
>checking for ppc64-redhat-linux-gnu-ranlib... no
>checking for ranlib... ranlib
>checking command to parse /usr/bin/nm -B output from gcc object... ok
>checking how to run the C preprocessor... gcc -E
>checking for ANSI C header files... yes
>checking for sys/types.h... yes
>checking for sys/stat.h... yes
>checking for stdlib.h... yes
>checking for string.h... yes
>checking for memory.h... yes
>checking for strings.h... yes
>checking for inttypes.h... yes
>checking for stdint.h... yes
>checking for unistd.h... yes
>checking for dlfcn.h... yes
>checking whether we are using the GNU C++ compiler... (cached) no
>checking whether g++ accepts -g... (cached) no
>checking dependency style of g++... (cached) none
>checking for objdir... .libs
>checking if gcc supports -fno-rtti -fno-exceptions... no
>checking for gcc option to produce PIC... -fPIC -DPIC
>checking if gcc PIC flag -fPIC -DPIC works... yes
>checking if gcc static flag -static works... yes
>checking if gcc supports -c -o file.o... yes
>checking if gcc supports -c -o file.o... (cached) yes
>checking whether the gcc linker (/usr/bin/ld -m elf64ppc) supports shared libraries... yes
>checking whether -lc should be explicitly linked in... no
>checking dynamic linker characteristics... GNU/Linux ld.so
>checking how to hardcode library paths into programs... immediate
>checking whether stripping libraries is possible... yes
>checking if libtool supports shared libraries... yes
>checking whether to build shared libraries... yes
>checking whether to build static libraries... yes
>checking for long long int... yes
>checking for ISO C++ TR1 include files... no
>checking whether g++ supports C++11 features by default... no
>checking whether g++ supports C++11 features with -std=c++11... no
>checking whether g++ supports C++11 features with -std=c++0x... no
>configure: No compiler with C++11 support was found
>checking for ppc64-redhat-linux-gnu-pkg-config... /usr/bin/ppc64-redhat-linux-gnu-pkg-config
>checking pkg-config is at least version 0.9.0... yes
>checking for GTEXTUTILS... yes
>checking that generated files are newer than configure... done
>configure: creating ./config.status
>config.status: creating Makefile
>config.status: creating doc/Makefile
>config.status: creating m4/Makefile
>config.status: creating src/Makefile
>config.status: creating src/libfastx/Makefile
>config.status: creating src/fastx_clipper/Makefile
>config.status: creating src/fastq_to_fasta/Makefile
>config.status: creating src/fastx_quality_stats/Makefile
>config.status: creating src/fastq_quality_converter/Makefile
>config.status: creating src/fastx_trimmer/Makefile
>config.status: creating src/fastq_quality_filter/Makefile
>config.status: creating src/fastq_quality_trimmer/Makefile
>config.status: creating src/fastx_artifacts_filter/Makefile
>config.status: creating src/fastx_reverse_complement/Makefile
>config.status: creating src/fastx_collapser/Makefile
>config.status: creating src/fastx_uncollapser/Makefile
>config.status: creating src/seqalign_test/Makefile
>config.status: creating src/fasta_formatter/Makefile
>config.status: creating src/fasta_nucleotide_changer/Makefile
>config.status: creating src/fastx_renamer/Makefile
>config.status: creating src/fastq_masker/Makefile
>config.status: creating galaxy/Makefile
>config.status: creating galaxy/tools/Makefile
>config.status: creating galaxy/tools/fastx_toolkit/Makefile
>config.status: creating galaxy/test-data/Makefile
>config.status: creating galaxy/static/Makefile
>config.status: creating galaxy/static/fastx_icons/Makefile
>config.status: creating galaxy/tool-data/Makefile
>config.status: creating scripts/Makefile
>config.status: creating build_scripts/Makefile
>config.status: creating config.h
>config.status: executing depfiles commands
>config.status: executing libtool commands
>+ make -j4 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection' 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11'
>make  all-recursive
>make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14'
>Making all in m4
>make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14/m4'
>make[2]: Nothing to be done for 'all'.
>make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14/m4'
>Making all in src
>make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14/src'
>Making all in libfastx
>make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14/src/libfastx'
>gcc -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -c -o chomp.o chomp.c
>gcc -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fastx.o fastx.c
>gcc -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fastx_args.o fastx_args.c
>g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -c -o sequence_alignment.o sequence_alignment.cpp
>make[3]: g++: Command not found
>make[3]: *** [Makefile:399: sequence_alignment.o] Error 127
>make[3]: *** Waiting for unfinished jobs....
>make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14/src/libfastx'
>make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14/src'
>make[2]: *** [Makefile:373: all-recursive] Error 1
>make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14'
>make[1]: *** [Makefile:411: all-recursive] Error 1
>make: *** [Makefile:342: all] Error 2
>RPM build errors:
>error: Bad exit status from /var/tmp/rpm-tmp.uomdbE (%build)
>    Bad exit status from /var/tmp/rpm-tmp.uomdbE (%build)
>Child return code was: 1
>EXCEPTION: [Error()]
>Traceback (most recent call last):
>  File "/usr/lib/python3.6/site-packages/mockbuild/trace_decorator.py", line 89, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python3.6/site-packages/mockbuild/util.py", line 582, in do
>    raise exception.Error("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>mockbuild.exception.Error: Command failed. See logs for output.
> # bash --login -c /usr/bin/rpmbuild -bb --target ppc64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec

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Attachments on bug 1603945: 1461843 | 1461844 | 1461845