Attachment 1462689 Details for Bug 1604269 – build.log

build.log

build.log (text/plain), 32.00 KB, created by Mohan Boddu on 2018-07-19 21:50:53 UTC

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Description:

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Creator: Mohan Boddu

Created: 2018-07-19 21:50:53 UTC

Size: 32.00 KB

patch

obsolete

>gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/simd/tests/scalar.cpp
>[ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/simd/tests/scalar_util.cpp
>[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/utility/tests/logger.cpp
>[ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/simd/tests/scalar_math.cpp
>[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/utility/tests/mutex.cpp
>[ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/testutils/unittest_main.cpp
>[ 98%] Linking CXX executable ../../../../bin/simd-test
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1
>/usr/bin/c++   -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -L/usr/lib64/atlas CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o  -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lsatlas /usr/lib64/liblmfit.so -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so 
>[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/utility/tests/path.cpp
>make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>[ 98%] Built target simd-test
>[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/utility/tests/stringutil.cpp
>[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/utility/tests/textreader.cpp
>[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/utility/tests/textwriter.cpp
>[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/utility/tests/typetraits.cpp
>[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/testutils/unittest_main.cpp
>[ 98%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/gromacs/mdlib/tests/simulationsignal.cpp
>[ 98%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++  -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/gtest/include -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/gmock-1.7.0/include -I/builddir/build/BUILD/gromacs-2018.1/openmpi_d/src -isystem /builddir/build/BUILD/gromacs-2018.1/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2018.1/src -isystem /usr/include/openmpi-ppc64le  -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2018.1/src/testutils/unittest_main.cpp
>[100%] Linking CXX executable ../../../../bin/utility-test
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1
>/usr/bin/c++   -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -L/usr/lib64/atlas CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o  -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lsatlas /usr/lib64/liblmfit.so -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so 
>[100%] Linking CXX executable ../../../../bin/mdlib-test
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1
>/usr/bin/c++   -pthread  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11   -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -L/usr/lib64/atlas CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o  -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lsatlas /usr/lib64/liblmfit.so -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so 
>make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>[100%] Built target utility-test
>make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>[100%] Built target mdlib-test
>make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend
>make[3]: Entering directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2018.1 /builddir/build/BUILD/gromacs-2018.1 /builddir/build/BUILD/gromacs-2018.1/openmpi_d /builddir/build/BUILD/gromacs-2018.1/openmpi_d /builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/tests.dir/DependInfo.cmake --color=
>Dependee "/builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/tests.dir/depend.internal".
>Dependee "/builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/tests.dir/depend.internal".
>Scanning dependencies of target tests
>make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build
>make[3]: Entering directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'.
>make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>[100%] Built target tests
>make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend
>make[3]: Entering directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>cd /builddir/build/BUILD/gromacs-2018.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2018.1 /builddir/build/BUILD/gromacs-2018.1 /builddir/build/BUILD/gromacs-2018.1/openmpi_d /builddir/build/BUILD/gromacs-2018.1/openmpi_d /builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color=
>Dependee "/builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/depend.internal".
>Dependee "/builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2018.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/depend.internal".
>Scanning dependencies of target run-ctest-nophys
>make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build
>make[3]: Entering directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>[100%] Running all tests except physical validation
>/usr/bin/ctest --output-on-failure -E physicalvalidationtests
>Test project /builddir/build/BUILD/gromacs-2018.1/openmpi_d
>      Start  1: TestUtilsUnitTests
> 1/24 Test  #1: TestUtilsUnitTests ...............   Passed    0.14 sec
>      Start  2: TestUtilsMpiUnitTests
> 2/24 Test  #2: TestUtilsMpiUnitTests ............   Passed    0.08 sec
>      Start  3: MdlibUnitTest
> 3/24 Test  #3: MdlibUnitTest ....................   Passed    0.07 sec
>      Start  4: AppliedForcesUnitTest
> 4/24 Test  #4: AppliedForcesUnitTest ............   Passed    0.07 sec
>      Start  5: ListedForcesTest
> 5/24 Test  #5: ListedForcesTest .................   Passed    0.06 sec
>      Start  6: CommandLineUnitTests
> 6/24 Test  #6: CommandLineUnitTests .............   Passed    0.14 sec
>      Start  7: EwaldUnitTests
> 7/24 Test  #7: EwaldUnitTests ...................   Passed    0.48 sec
>      Start  8: FFTUnitTests
> 8/24 Test  #8: FFTUnitTests .....................   Passed    0.10 sec
>      Start  9: GpuUtilsUnitTests
> 9/24 Test  #9: GpuUtilsUnitTests ................***Failed    0.08 sec
>--------------------------------------------------------------------------
>It looks like orte_init failed for some reason; your parallel process is
>likely to abort.  There are many reasons that a parallel process can
>fail during orte_init; some of which are due to configuration or
>environment problems.  This failure appears to be an internal failure;
>here's some additional information (which may only be relevant to an
>Open MPI developer):
>  getting local rank failed
>  --> Returned value Not found (-13) instead of ORTE_SUCCESS
>--------------------------------------------------------------------------
>--------------------------------------------------------------------------
>It looks like orte_init failed for some reason; your parallel process is
>likely to abort.  There are many reasons that a parallel process can
>fail during orte_init; some of which are due to configuration or
>environment problems.  This failure appears to be an internal failure;
>here's some additional information (which may only be relevant to an
>Open MPI developer):
>  orte_ess_init failed
>  --> Returned value Not found (-13) instead of ORTE_SUCCESS
>--------------------------------------------------------------------------
>--------------------------------------------------------------------------
>It looks like MPI_INIT failed for some reason; your parallel process is
>likely to abort.  There are many reasons that a parallel process can
>fail during MPI_INIT; some of which are due to configuration or environment
>problems.  This failure appears to be an internal failure; here's some
>additional information (which may only be relevant to an Open MPI
>developer):
>  ompi_mpi_init: ompi_rte_init failed
>  --> Returned "Not found" (-13) instead of "Success" (0)
>--------------------------------------------------------------------------
>*** An error occurred in MPI_Init_thread
>*** on a NULL communicator
>*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
>***    and potentially your MPI job)
>[buildvm-ppc64le-16.ppc.fedoraproject.org:10972] Local abort before MPI_INIT completed completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
>      Start 10: HardwareUnitTests
>10/24 Test #10: HardwareUnitTests ................   Passed    0.09 sec
>      Start 11: MathUnitTests
>11/24 Test #11: MathUnitTests ....................   Passed    0.09 sec
>      Start 12: MdrunUtilityUnitTests
>12/24 Test #12: MdrunUtilityUnitTests ............   Passed    0.07 sec
>      Start 13: MdrunUtilityMpiUnitTests
>13/24 Test #13: MdrunUtilityMpiUnitTests .........   Passed    0.08 sec
>      Start 14: OnlineHelpUnitTests
>14/24 Test #14: OnlineHelpUnitTests ..............   Passed    0.07 sec
>      Start 15: OptionsUnitTests
>15/24 Test #15: OptionsUnitTests .................   Passed    0.07 sec
>      Start 16: RandomUnitTests
>16/24 Test #16: RandomUnitTests ..................   Passed    0.07 sec
>      Start 17: TableUnitTests
>17/24 Test #17: TableUnitTests ...................   Passed    0.43 sec
>      Start 18: TaskAssignmentUnitTests
>18/24 Test #18: TaskAssignmentUnitTests ..........   Passed    0.06 sec
>      Start 19: UtilityUnitTests
>19/24 Test #19: UtilityUnitTests .................   Passed    0.09 sec
>      Start 20: FileIOTests
>20/24 Test #20: FileIOTests ......................   Passed    0.08 sec
>      Start 21: PullTest
>21/24 Test #21: PullTest .........................   Passed    0.06 sec
>      Start 22: AwhTest
>22/24 Test #22: AwhTest ..........................   Passed    0.07 sec
>      Start 23: SimdUnitTests
>23/24 Test #23: SimdUnitTests ....................   Passed    0.06 sec
>      Start 24: CompatibilityHelpersTests
>24/24 Test #24: CompatibilityHelpersTests ........   Passed    0.07 sec
>96% tests passed, 1 tests failed out of 24
>Label Time Summary:
>GTest       =   2.69 sec*proc (24 tests)
>MpiTest     =   0.16 sec*proc (2 tests)
>UnitTest    =   2.69 sec*proc (24 tests)
>Total Test time (real) =   2.80 sec
>The following tests FAILED:
>	  9 - GpuUtilsUnitTests (Failed)
>Errors while running CTest
>make[3]: *** [CMakeFiles/run-ctest-nophys.dir/build.make:61: CMakeFiles/run-ctest-nophys] Error 8
>make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>make[2]: *** [CMakeFiles/Makefile2:1380: CMakeFiles/run-ctest-nophys.dir/all] Error 2
>make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>make[1]: *** [CMakeFiles/Makefile2:1161: CMakeFiles/check.dir/rule] Error 2
>make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2018.1/openmpi_d'
>make: *** [Makefile:629: check] Error 2
>error: Bad exit status from /var/tmp/rpm-tmp.gGJohb (%check)
>RPM build errors:
>    Bad exit status from /var/tmp/rpm-tmp.gGJohb (%check)
>Child return code was: 1
>EXCEPTION: [Error()]
>Traceback (most recent call last):
>  File "/usr/lib/python3.6/site-packages/mockbuild/trace_decorator.py", line 89, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python3.6/site-packages/mockbuild/util.py", line 582, in do
>    raise exception.Error("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>mockbuild.exception.Error: Command failed. See logs for output.
> # bash --login -c /usr/bin/rpmbuild -bb --target ppc64le --nodeps /builddir/build/SPECS/gromacs.spec

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Attachments on bug 1604269: 1462689 | 1462690 | 1462691