Attachment 1467901 Details for Bug 1606296 – build.log

build.log

build.log (text/plain), 5.79 KB, created by Mohan Boddu on 2018-07-20 19:23:09 UTC

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Creator: Mohan Boddu

Created: 2018-07-20 19:23:09 UTC

Size: 5.79 KB

patch

obsolete

>Mock Version: 1.3.4
>Mock Version: 1.3.4
>ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target s390x --nodeps /builddir/build/SPECS/samtools.spec'], chrootPath='/var/lib/mock/f29-build-13079602-950096/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3ffa347c9e8>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
>Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target s390x --nodeps /builddir/build/SPECS/samtools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
>Building target platforms: s390x
>Building for target s390x
>Wrote: /builddir/build/SRPMS/samtools-0.1.19-14.fc29.src.rpm
>Child return code was: 0
>ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target s390x --nodeps /builddir/build/SPECS/samtools.spec'], chrootPath='/var/lib/mock/f29-build-13079602-950096/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3ffa347c9e8>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
>Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target s390x --nodeps /builddir/build/SPECS/samtools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
>Building target platforms: s390x
>Building for target s390x
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.9r6Ikg
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd /builddir/build/BUILD
>+ rm -rf samtools-0.1.19
>+ /usr/bin/bzip2 -dc /builddir/build/SOURCES/samtools-0.1.19.tar.bz2
>+ /usr/bin/tar -xof -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ cd samtools-0.1.19
>+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ echo 'Patch #0 (samtools-0.1.14-soname.patch):'
>Patch #0 (samtools-0.1.14-soname.patch):
>+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .soname --fuzz=0
>patching file Makefile
>Hunk #1 succeeded at 84 (offset 6 lines).
>+ echo 'Patch #1 (samtools-0.1.19-faidx_fetch_seq2.patch):'
>Patch #1 (samtools-0.1.19-faidx_fetch_seq2.patch):
>+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .seq2 --fuzz=0
>patching file faidx.c
>+ echo 'Patch #2 (samtools-0.1.19-R-fixes.patch):'
>Patch #2 (samtools-0.1.19-R-fixes.patch):
>+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .Rfixes --fuzz=0
>patching file faidx.c
>patching file faidx.h
>+ perl -pi -e 's[/software/bin/python][/usr/bin/python]' misc/varfilter.py
>+ sed -i 's/\r//' misc/export2sam.pl
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Ee4mpt
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd samtools-0.1.19
>+ make 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection' dylib -j2
>make[1]: Entering directory '/builddir/build/BUILD/samtools-0.1.19'
>rm -fr gmon.out *.o a.out *.exe *.dSYM razip bgzip samtools *~ *.a *.so.* *.so *.dylib
>make[1]: Leaving directory '/builddir/build/BUILD/samtools-0.1.19'
>make[1]: Entering directory '/builddir/build/BUILD/samtools-0.1.19'
>gcc -c -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -DBGZF_CACHE -I. bgzf.c -o bgzf.o
>make[1]: gcc: Command not found
>gcc -c -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kstring.c -o kstring.o
>make[1]: gcc: Command not found
>make[1]: *** [Makefile:56: bgzf.o] Error 127
>make[1]: *** Waiting for unfinished jobs....
>make[1]: *** [Makefile:24: kstring.o] Error 127
>make[1]: Leaving directory '/builddir/build/BUILD/samtools-0.1.19'
>make: *** [Makefile:90: dylib] Error 2
>error: Bad exit status from /var/tmp/rpm-tmp.Ee4mpt (%build)
>RPM build errors:
>    Bad exit status from /var/tmp/rpm-tmp.Ee4mpt (%build)
>Child return code was: 1
>EXCEPTION: [Error()]
>Traceback (most recent call last):
>  File "/usr/lib/python3.6/site-packages/mockbuild/trace_decorator.py", line 89, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python3.6/site-packages/mockbuild/util.py", line 582, in do
>    raise exception.Error("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>mockbuild.exception.Error: Command failed. See logs for output.
> # bash --login -c /usr/bin/rpmbuild -bb --target s390x --nodeps /builddir/build/SPECS/samtools.spec

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Attachments on bug 1606296: 1467901 | 1467902 | 1467903