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Red Hat Bugzilla – Attachment 1658354 Details for
Bug 1799130
R-igraph: FTBFS in Fedora rawhide/f32
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build.log
build.log (text/plain), 32.00 KB, created by
Fedora Release Engineering
on 2020-02-06 15:53:12 UTC
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hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Fedora Release Engineering
Created:
2020-02-06 15:53:12 UTC
Size:
32.00 KB
patch
obsolete
> html > centralize html > cliques html > closeness html > cluster_edge_betweenness html > cluster_fast_greedy html > cluster_infomap html > cluster_label_prop html > cluster_leading_eigen html >Rd warning: /builddir/build/BUILD/igraph/igraph/man/cluster_leading_eigen.Rd:113: file link 'as.dendrogram' in package 'stats' does not exist and so has been treated as a topic > cluster_louvain html > cluster_optimal html > cluster_spinglass html > cluster_walktrap html > cocitation html > cohesive_blocks html > communities html > compare html > complementer html > component_wise html > components html > compose html > consensus_tree html > console html > constraint html > contract html > convex_hull html > coreness html > count_isomorphisms html > count_motifs html > count_subgraph_isomorphisms html > count_triangles html > curve_multiple html > decompose html > degree html > delete_edge_attr html > delete_edges html > delete_graph_attr html > delete_vertex_attr html > delete_vertices html > dfs html > diameter html > difference html > difference.igraph html > difference.igraph.es html > difference.igraph.vs html > dim_select html > disjoint_union html > distances html > diverging_pal html > diversity html > dominator_tree html > dyad_census html > each_edge html > eccentricity html > edge html > edge_attr-set html > edge_attr html > edge_attr_names html > edge_connectivity html > edge_density html > ego html > eigen_centrality html > embed_adjacency_matrix html > embed_laplacian_matrix html > ends html > erdos.renyi.game html > fit_hrg html > fit_power_law html > get.edge.ids html > girth html > gorder html > graph_ html > graph_attr-set html > graph_attr html > graph_attr_names html > graph_from_adj_list html > graph_from_adjacency_matrix html > graph_from_atlas html > graph_from_data_frame html > graph_from_edgelist html > graph_from_graphdb html > graph_from_graphnel html > graph_from_incidence_matrix html > graph_from_isomorphism_class html > graph_from_lcf html > graph_from_literal html > graph_id html > graph_version html > graphlet_basis html > groups html > gsize html > head_of html > head_print html > hrg-methods html > hrg html > hrg_tree html > hub_score html > identical_graphs html > igraph-attribute-combination html > igraph-dollar html > igraph-es-attributes html > igraph-es-indexing html > igraph-es-indexing2 html > igraph-minus html > igraph-vs-attributes html > igraph-vs-indexing html > igraph-vs-indexing2 html > igraph_demo html > igraph_options html > igraph_test html > igraph_version html > incident html > incident_edges html > indent_print html > intersection html > intersection.igraph html > intersection.igraph.es html > intersection.igraph.vs html > is_chordal html > is_dag html > is_degseq html > is_directed html > is_graphical html > is_igraph html > is_min_separator html > is_named html > is_printer_callback html > is_separator html > is_weighted html > isomorphic html > isomorphism_class html > isomorphisms html > ivs html > keeping_degseq html > knn html > laplacian_matrix html > layout.deprecated html > layout.fruchterman.reingold.grid html > layout.spring html > layout.svd html > layout_ html > layout_as_bipartite html > layout_as_star html > layout_as_tree html > layout_in_circle html > layout_nicely html > layout_on_grid html > layout_on_sphere html > layout_randomly html > layout_with_dh html > layout_with_drl html > layout_with_fr html > layout_with_gem html > layout_with_graphopt html > layout_with_kk html > layout_with_lgl html > layout_with_mds html > layout_with_sugiyama html > local_scan html > make_ html > make_bipartite_graph html > make_chordal_ring html > make_clusters html > make_de_bruijn_graph html > make_empty_graph html > make_full_bipartite_graph html > make_full_citation_graph html > make_full_graph html > make_graph html > make_kautz_graph html > make_lattice html > make_line_graph html > make_ring html > make_star html > make_tree html > match_vertices html > matching html > max_cardinality html > max_flow html > merge_coords html > min_cut html > min_separators html > min_st_separators html > modularity.igraph html > motifs html > mst html > neighbors html > nexus html > norm_coords html > normalize html > page_rank html > path html > permute html > pipe html > plot.common html >Rd warning: /builddir/build/BUILD/igraph/igraph/man/plot.common.Rd:184: file link 'tkfont.create' in package 'tcltk' does not exist and so has been treated as a topic >Rd warning: /builddir/build/BUILD/igraph/igraph/man/plot.common.Rd:186: file link 'tkfont.create' in package 'tcltk' does not exist and so has been treated as a topic >Rd warning: /builddir/build/BUILD/igraph/igraph/man/plot.common.Rd:217: file link 'tkfont.create' in package 'tcltk' does not exist and so has been treated as a topic > plot.igraph html > plot.sir html > plot_dendrogram.communities html > plot_dendrogram.igraphHRG html > plus-.igraph html > power_centrality html > predict_edges html > print.igraph html > print.igraph.es html > print.igraph.vs html > print.igraphHRG html > print.igraphHRGConsensus html > printer_callback html > printr html > r_pal html > radius html > random_walk html > read_graph html > reciprocity html > rep.igraph html > rev.igraph.es html > rev.igraph.vs html > rewire html > rglplot html > running_mean html > sample_ html > sample_bipartite html > sample_correlated_gnp html > sample_correlated_gnp_pair html > sample_degseq html > sample_dirichlet html > sample_dot_product html > sample_fitness html > sample_fitness_pl html > sample_forestfire html > sample_gnm html > sample_gnp html > sample_grg html > sample_growing html > sample_hierarchical_sbm html > sample_hrg html > sample_islands html > sample_k_regular html > sample_last_cit html > sample_motifs html > sample_pa html > sample_pa_age html > sample_pref html > sample_sbm html > sample_seq html > sample_smallworld html > sample_sphere_surface html > sample_sphere_volume html > sample_traits_callaway html > scan_stat html > scg-method html > scg html > scg_eps html > scg_group html > scg_semi_proj html > sequential_pal html > set_edge_attr html > set_graph_attr html > set_vertex_attr html > shapes html > similarity html > simplified html > simplify html > sir html > spectrum html > split_join_distance html > srand html > st_cuts html > st_min_cuts html > stochastic_matrix html > strength html > sub-.igraph html > sub-sub-.igraph html > subcomponent html > subgraph html > subgraph_centrality html > subgraph_isomorphic html > subgraph_isomorphisms html > tail_of html > tkigraph html > tkplot html > topo_sort html > transitivity html > triad_census html > unfold_tree html > union html > union.igraph html > union.igraph.es html > union.igraph.vs html > unique.igraph.es html > unique.igraph.vs html > upgrade_graph html > vertex html > vertex.shape.pie html > vertex_attr-set html > vertex_attr html > vertex_attr_names html > vertex_connectivity html > which_multiple html > which_mutual html > with_edge_ html > with_graph_ html > with_igraph_opt html > with_vertex_ html > without_attr html > without_loops html > without_multiples html > write_graph html >** building package indices >** testing if installed package can be loaded from temporary location >** checking absolute paths in shared objects and dynamic libraries >** testing if installed package can be loaded from final location >** testing if installed package keeps a record of temporary installation path >* DONE (igraph) >+ test -d igraph/src >+ cd igraph/src >+ rm -f DensityGrid.o DensityGrid_3d.o NetDataTypes.o NetRoutines.o adjlist.o arpack.o array.o atlas.o attributes.o basic_query.o bfgs.o bigint.o bignum.o bipartite.o blas.o bliss.o cattributes.o centrality.o cliques.o clustertool.o cocitation.o cohesive_blocks.o coloring.o community.o complex.o components.o conversion.o cores.o decomposition.o distances.o dotproduct.o dqueue.o drl_graph.o drl_graph_3d.o drl_layout.o drl_layout_3d.o drl_parse.o eigen.o embedding.o fast_community.o feedback_arc_set.o flow.o foreign-dl-lexer.o foreign-dl-parser.o foreign-gml-lexer.o foreign-gml-parser.o foreign-graphml.o foreign-lgl-lexer.o foreign-lgl-parser.o foreign-ncol-lexer.o foreign-ncol-parser.o foreign-pajek-lexer.o foreign-pajek-parser.o foreign.o forestfire.o fortran_intrinsics.o games.o gengraph_box_list.o gengraph_degree_sequence.o gengraph_graph_molloy_hash.o gengraph_graph_molloy_optimized.o gengraph_mr-connected.o gengraph_powerlaw.o gengraph_random.o glet.o glpk_support.o gml_tree.o hacks.o heap.o igraph_buckets.o igraph_cliquer.o igraph_error.o igraph_estack.o igraph_fixed_vectorlist.o igraph_grid.o igraph_hashtable.o igraph_heap.o igraph_hrg.o igraph_hrg_types.o igraph_marked_queue.o igraph_psumtree.o igraph_set.o igraph_stack.o igraph_strvector.o igraph_trie.o infomap.o infomap_FlowGraph.o infomap_Greedy.o infomap_Node.o interrupt.o iterators.o lad.o lapack.o layout.o layout_dh.o layout_fr.o layout_gem.o layout_kk.o lazyeval.o lsap.o matching.o math.o matrix.o maximal_cliques.o memory.o microscopic_update.o mixing.o motifs.o operators.o optimal_modularity.o other.o paths.o pottsmodel_2.o progress.o prpack.o qsort.o qsort_r.o random.o random_walk.o rinterface.o rinterface_extra.o sbm.o scan.o scg.o scg_approximate_methods.o scg_exact_scg.o scg_kmeans.o scg_optimal_method.o scg_utils.o separators.o sir.o spanning_trees.o sparsemat.o spectral_properties.o spmatrix.o st-cuts.o statusbar.o structural_properties.o structure_generators.o sugiyama.o topology.o triangles.o type_indexededgelist.o types.o vector.o vector_ptr.o version.o visitors.o walktrap.o walktrap_communities.o walktrap_graph.o walktrap_heap.o zeroin.o igraph.so >+ rm -f /builddir/build/BUILDROOT/R-igraph-1.2.4.2-2.fc32.arm/usr/lib/R/library/R.css >+ /usr/lib/rpm/find-debuginfo.sh -j5 --strict-build-id -m -i --build-id-seed 1.2.4.2-2.fc32 --unique-debug-suffix -1.2.4.2-2.fc32.arm --unique-debug-src-base R-igraph-1.2.4.2-2.fc32.arm --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/igraph >explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-igraph-1.2.4.2-2.fc32.arm/usr/lib/R/library/igraph/libs/igraph.so >extracting debug info from /builddir/build/BUILDROOT/R-igraph-1.2.4.2-2.fc32.arm/usr/lib/R/library/igraph/libs/igraph.so >original debug info size: 12888kB, size after compression: 11412kB >/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. >cpio: igraph/src/lex.yy.c: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-dl-lexer.l: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-dl-parser.y: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-gml-lexer.l: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-gml-parser.y: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-lgl-lexer.l: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-lgl-parser.y: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-ncol-lexer.l: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-ncol-parser.y: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-pajek-lexer.l: Cannot stat: No such file or directory >cpio: igraph/src/src/foreign-pajek-parser.y: Cannot stat: No such file or directory >cpio: igraph/src/y.tab.c: Cannot stat: No such file or directory >cpio: igraph/src/y.tab.h: Cannot stat: No such file or directory >14385 blocks >+ /usr/lib/rpm/check-buildroot >+ /usr/lib/rpm/redhat/brp-ldconfig >+ /usr/lib/rpm/brp-compress >+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip >+ /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 >+ /usr/lib/rpm/brp-python-hardlink >+ /usr/lib/rpm/redhat/brp-mangle-shebangs >Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.3A7FVc >+ umask 022 >+ cd /builddir/build/BUILD >+ cd igraph >+ ARGS=--no-examples >+ _R_CHECK_FORCE_SUGGESTS_=0 >+ /usr/bin/R CMD check igraph --no-examples >* using log directory '/builddir/build/BUILD/igraph/igraph.Rcheck' >* using R version 3.6.2 (2019-12-12) >* using platform: armv7hl-redhat-linux-gnu (32-bit) >* using session charset: ASCII >* using option '--no-examples' >* checking for file 'igraph/DESCRIPTION' ... OK >* this is package 'igraph' version '1.2.4.2' >* package encoding: UTF-8 >* checking package namespace information ... OK >* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: > cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' >Warning: unable to access index for repository https://bioconductor.org/packages/3.10/bioc/src/contrib: > cannot open URL 'https://bioconductor.org/packages/3.10/bioc/src/contrib/PACKAGES' >Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/annotation/src/contrib: > cannot open URL 'https://bioconductor.org/packages/3.10/data/annotation/src/contrib/PACKAGES' >Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/experiment/src/contrib: > cannot open URL 'https://bioconductor.org/packages/3.10/data/experiment/src/contrib/PACKAGES' > NOTE >Packages suggested but not available for checking: > 'graph', 'igraphdata', 'rgl', 'scales' >* checking if this is a source package ... NOTE >Found the following apparent object files/libraries: > src/AMD/Source/amd.o src/AMD/Source/amd_1.o src/AMD/Source/amd_2.o > src/AMD/Source/amd_aat.o src/AMD/Source/amd_control.o > src/AMD/Source/amd_defaults.o src/AMD/Source/amd_dump.o > src/AMD/Source/amd_global.o src/AMD/Source/amd_info.o > src/AMD/Source/amd_order.o src/AMD/Source/amd_post_tree.o > src/AMD/Source/amd_postorder.o src/AMD/Source/amd_preprocess.o > src/AMD/Source/amd_valid.o src/AMD/Source/amdbar.o > src/CHOLMOD/Check/cholmod_check.o src/CHOLMOD/Check/cholmod_read.o > src/CHOLMOD/Check/cholmod_write.o src/CHOLMOD/Cholesky/cholmod_amd.o > src/CHOLMOD/Cholesky/cholmod_analyze.o > src/CHOLMOD/Cholesky/cholmod_colamd.o > src/CHOLMOD/Cholesky/cholmod_etree.o > src/CHOLMOD/Cholesky/cholmod_factorize.o > src/CHOLMOD/Cholesky/cholmod_postorder.o > src/CHOLMOD/Cholesky/cholmod_rcond.o > src/CHOLMOD/Cholesky/cholmod_resymbol.o > src/CHOLMOD/Cholesky/cholmod_rowcolcounts.o > src/CHOLMOD/Cholesky/cholmod_rowfac.o > src/CHOLMOD/Cholesky/cholmod_solve.o > src/CHOLMOD/Cholesky/cholmod_spsolve.o src/CHOLMOD/Core/cholmod_aat.o > src/CHOLMOD/Core/cholmod_add.o src/CHOLMOD/Core/cholmod_band.o > src/CHOLMOD/Core/cholmod_change_factor.o > src/CHOLMOD/Core/cholmod_common.o src/CHOLMOD/Core/cholmod_complex.o > src/CHOLMOD/Core/cholmod_copy.o src/CHOLMOD/Core/cholmod_dense.o > src/CHOLMOD/Core/cholmod_error.o src/CHOLMOD/Core/cholmod_factor.o > src/CHOLMOD/Core/cholmod_memory.o src/CHOLMOD/Core/cholmod_sparse.o > src/CHOLMOD/Core/cholmod_transpose.o > src/CHOLMOD/Core/cholmod_triplet.o src/CHOLMOD/Core/cholmod_version.o > src/CHOLMOD/MatrixOps/cholmod_drop.o > src/CHOLMOD/MatrixOps/cholmod_horzcat.o > src/CHOLMOD/MatrixOps/cholmod_norm.o > src/CHOLMOD/MatrixOps/cholmod_scale.o > src/CHOLMOD/MatrixOps/cholmod_sdmult.o > src/CHOLMOD/MatrixOps/cholmod_ssmult.o > src/CHOLMOD/MatrixOps/cholmod_submatrix.o > src/CHOLMOD/MatrixOps/cholmod_symmetry.o > src/CHOLMOD/MatrixOps/cholmod_vertcat.o > src/CHOLMOD/Modify/cholmod_rowadd.o > src/CHOLMOD/Modify/cholmod_rowdel.o > src/CHOLMOD/Modify/cholmod_updown.o > src/CHOLMOD/Partition/cholmod_camd.o > src/CHOLMOD/Partition/cholmod_ccolamd.o > src/CHOLMOD/Partition/cholmod_csymamd.o > src/CHOLMOD/Partition/cholmod_metis.o > src/CHOLMOD/Partition/cholmod_nesdis.o > src/CHOLMOD/Supernodal/cholmod_super_numeric.o > src/CHOLMOD/Supernodal/cholmod_super_solve.o > src/CHOLMOD/Supernodal/cholmod_super_symbolic.o > src/COLAMD/Source/colamd.o src/COLAMD/Source/colamd_global.o > src/SuiteSparse_config/SuiteSparse_config.o src/bliss/bliss_heap.o > src/bliss/defs.o src/bliss/graph.o src/bliss/orbit.o > src/bliss/partition.o src/bliss/uintseqhash.o src/bliss/utils.o > src/cliquer/cliquer.o src/cliquer/cliquer_graph.o > src/cliquer/reorder.o src/cs/cs_add.o src/cs/cs_amd.o > src/cs/cs_chol.o src/cs/cs_cholsol.o src/cs/cs_compress.o > src/cs/cs_counts.o src/cs/cs_cumsum.o src/cs/cs_dfs.o > src/cs/cs_dmperm.o src/cs/cs_droptol.o src/cs/cs_dropzeros.o > src/cs/cs_dupl.o src/cs/cs_entry.o src/cs/cs_ereach.o > src/cs/cs_etree.o src/cs/cs_fkeep.o src/cs/cs_gaxpy.o > src/cs/cs_happly.o src/cs/cs_house.o src/cs/cs_ipvec.o > src/cs/cs_leaf.o src/cs/cs_load.o src/cs/cs_lsolve.o > src/cs/cs_ltsolve.o src/cs/cs_lu.o src/cs/cs_lusol.o > src/cs/cs_malloc.o src/cs/cs_maxtrans.o src/cs/cs_multiply.o > src/cs/cs_norm.o src/cs/cs_permute.o src/cs/cs_pinv.o > src/cs/cs_post.o src/cs/cs_print.o src/cs/cs_pvec.o src/cs/cs_qr.o > src/cs/cs_qrsol.o src/cs/cs_randperm.o src/cs/cs_reach.o > src/cs/cs_scatter.o src/cs/cs_scc.o src/cs/cs_schol.o > src/cs/cs_spsolve.o src/cs/cs_sqr.o src/cs/cs_symperm.o > src/cs/cs_tdfs.o src/cs/cs_transpose.o src/cs/cs_updown.o > src/cs/cs_usolve.o src/cs/cs_util.o src/cs/cs_utsolve.o > src/plfit/error.o src/plfit/gss.o src/plfit/kolmogorov.o > src/plfit/lbfgs.o src/plfit/options.o src/plfit/plfit.o > src/plfit/zeta.o src/prpack/prpack_base_graph.o > src/prpack/prpack_igraph_graph.o > src/prpack/prpack_preprocessed_ge_graph.o > src/prpack/prpack_preprocessed_gs_graph.o > src/prpack/prpack_preprocessed_scc_graph.o > src/prpack/prpack_preprocessed_schur_graph.o > src/prpack/prpack_result.o src/prpack/prpack_solver.o > src/prpack/prpack_utils.o src/simpleraytracer/Color.o > src/simpleraytracer/Light.o src/simpleraytracer/Point.o > src/simpleraytracer/RIgraphRay.o src/simpleraytracer/Ray.o > src/simpleraytracer/RayTracer.o src/simpleraytracer/RayVector.o > src/simpleraytracer/Shape.o src/simpleraytracer/Sphere.o > src/simpleraytracer/Triangle.o src/simpleraytracer/unit_limiter.o >Object files/libraries should not be included in a source package. >* checking if there is a namespace ... OK >* checking for executable files ... OK >* checking for hidden files and directories ... OK >* checking for portable file names ... OK >* checking for sufficient/correct file permissions ... OK >* checking whether package 'igraph' can be installed ... OK >* checking installed package size ... NOTE > installed size is 18.3Mb > sub-directories of 1Mb or more: > R 1.4Mb > help 1.1Mb > libs 15.3Mb >* checking package directory ... OK >* checking DESCRIPTION meta-information ... OK >* checking top-level files ... OK >* checking for left-over files ... OK >* checking index information ... OK >* checking package subdirectories ... OK >* checking R files for non-ASCII characters ... OK >* checking R files for syntax errors ... WARNING >Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") : > OS reports request to set locale to "en_US.UTF-8" cannot be honored >* checking whether the package can be loaded ... OK >* checking whether the package can be loaded with stated dependencies ... OK >* checking whether the package can be unloaded cleanly ... OK >* checking whether the namespace can be loaded with stated dependencies ... OK >* checking whether the namespace can be unloaded cleanly ... OK >* checking loading without being on the library search path ... WARNING >Error: package or namespace load failed for 'igraph' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): > there is no package called 'magrittr' >Execution halted >It looks like this package has a loading problem when not on .libPaths: >see the messages for details. >* checking dependencies in R code ... OK >* checking S3 generic/method consistency ... OK >* checking replacement functions ... OK >* checking foreign function calls ... OK >* checking R code for possible problems ... OK >* checking Rd files ... OK >* checking Rd metadata ... OK >* checking Rd cross-references ... OK >* checking for missing documentation entries ... OK >* checking for code/documentation mismatches ... OK >* checking Rd \usage sections ... OK >* checking Rd contents ... OK >* checking for unstated dependencies in examples ... OK >* checking line endings in shell scripts ... OK >* checking line endings in C/C++/Fortran sources/headers ... OK >* checking line endings in Makefiles ... OK >* checking compilation flags in Makevars ... NOTE >Package has both 'src/Makevars.in' and 'src/Makevars'. >Installation with --no-configure' is unlikely to work. If you intended >'src/Makevars' to be used on Windows, rename it to 'src/Makevars.win' >otherwise remove it. If 'configure' created 'src/Makevars', you need a >'cleanup' script. >* checking for GNU extensions in Makefiles ... WARNING >Found the following file(s) containing GNU extensions: > src/Makevars > src/Makevars.in >Portable Makefiles do not use GNU extensions such as +=, :=, $(shell), >$(wildcard), ifeq ... endif, .NOTPARALLEL See section 'Writing portable >packages' in the 'Writing R Extensions' manual. >* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK >* checking include directives in Makefiles ... OK >* checking compiled code ... WARNING >File 'igraph/libs/igraph.so': > Found 'abort', possibly from 'abort' (C) > Objects: 'DensityGrid.o', 'DensityGrid_3d.o', 'bliss/graph.o', > 'bliss/partition.o', 'bliss/utils.o', 'drl_graph.o', > 'drl_graph_3d.o', 'igraph_hrg_types.o', 'infomap.o', > 'infomap_FlowGraph.o', 'infomap_Greedy.o', 'infomap_Node.o', > 'prpack/prpack_base_graph.o' > Found 'printf', possibly from 'printf' (C) > Objects: 'DensityGrid.o', 'DensityGrid_3d.o', 'bliss/graph.o', > 'bliss/partition.o', 'bliss/utils.o', 'drl_graph.o', > 'drl_graph_3d.o', 'igraph_hrg_types.o', 'infomap.o', > 'infomap_FlowGraph.o', 'infomap_Greedy.o', 'infomap_Node.o', > 'prpack/prpack_base_graph.o' >Compiled code should not call entry points which might terminate R nor >write to stdout/stderr instead of to the console, nor use Fortran I/O >nor system RNGs. >See 'Writing portable packages' in the 'Writing R Extensions' manual. >* checking examples ... SKIPPED >* checking for unstated dependencies in 'tests' ... OK >* checking tests ... > Running 'testthat.R' > ERROR >Running the tests in 'tests/testthat.R' failed. >Last 13 lines of output: > > > > > suppressWarnings(RNGversion("3.5.0")) > > test_check("igraph") > -- 1. Error: cluster_leading_eigen works (@test_leading.eigenvector.community.R# > At arpack.c:944 : ARPACK error, Starting vector is zero > Backtrace: > 1. igraph::cluster_leading_eigen(g) > > == testthat results ======================================================= > [ OK: 3207 | SKIPPED: 5 | WARNINGS: 1374 | FAILED: 1 ] > 1. Error: cluster_leading_eigen works (@test_leading.eigenvector.community.R#68) > > Error: testthat unit tests failed > Execution halted >* checking PDF version of manual ... OK >* DONE >Status: 1 ERROR, 4 WARNINGs, 4 NOTEs >See > '/builddir/build/BUILD/igraph/igraph.Rcheck/00check.log' >for details. >error: Bad exit status from /var/tmp/rpm-tmp.3A7FVc (%check) > Bad exit status from /var/tmp/rpm-tmp.3A7FVc (%check) >RPM build errors: >Child return code was: 1 >EXCEPTION: [Error()] >Traceback (most recent call last): > File "/usr/lib/python3.7/site-packages/mockbuild/trace_decorator.py", line 95, in trace > result = func(*args, **kw) > File "/usr/lib/python3.7/site-packages/mockbuild/util.py", line 746, in do_with_status > raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) >mockbuild.exception.Error: Command failed: > # bash --login -c /usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/R-igraph.spec >
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