Attachment 1977550 Details for Bug 2225691 – build.log

build.log

build.log (text/plain), 32.00 KB, created by Fedora Release Engineering on 2023-07-25 17:07:44 UTC

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Creator: Fedora Release Engineering

Created: 2023-07-25 17:07:44 UTC

Size: 32.00 KB

patch

obsolete

>-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
>+ export FCFLAGS
>+ VALAFLAGS=-g
>+ export VALAFLAGS
>+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
>+ export RUSTFLAGS
>+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
>+ export LDFLAGS
>+ LT_SYS_LIBRARY_PATH=/usr/lib64:
>+ export LT_SYS_LIBRARY_PATH
>+ CC=gcc
>+ export CC
>+ CXX=g++
>+ export CXX
>+ cd rgeos
>+ RPM_EC=0
>++ jobs -p
>+ exit 0
>Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.D1M1Vl
>+ umask 022
>+ cd /builddir/build/BUILD
>+ '[' /builddir/build/BUILDROOT/R-rgeos-0.6.3-2.fc39.aarch64 '!=' / ']'
>+ rm -rf /builddir/build/BUILDROOT/R-rgeos-0.6.3-2.fc39.aarch64
>++ dirname /builddir/build/BUILDROOT/R-rgeos-0.6.3-2.fc39.aarch64
>+ mkdir -p /builddir/build/BUILDROOT
>+ mkdir /builddir/build/BUILDROOT/R-rgeos-0.6.3-2.fc39.aarch64
>+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
>+ export CFLAGS
>+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
>+ export CXXFLAGS
>+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
>+ export FFLAGS
>+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
>+ export FCFLAGS
>+ VALAFLAGS=-g
>+ export VALAFLAGS
>+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
>+ export RUSTFLAGS
>+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
>+ export LDFLAGS
>+ LT_SYS_LIBRARY_PATH=/usr/lib64:
>+ export LT_SYS_LIBRARY_PATH
>+ CC=gcc
>+ export CC
>+ CXX=g++
>+ export CXX
>+ cd rgeos
>+ mkdir -p /builddir/build/BUILDROOT/R-rgeos-0.6.3-2.fc39.aarch64/usr/lib64/R/library
>+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-rgeos-0.6.3-2.fc39.aarch64/usr/lib64/R/library rgeos
>* installing *source* package 'rgeos' ...
>file 'inst/SVN_VERSION' is missing
>file 'man/topo-bin-gUnion.Rd' has the wrong MD5 checksum
>** using staged installation
>configure: CC: gcc
>configure: CXX: g++
>configure: rgeos: 0.6-3
>checking for /usr/bin/svnversion... no
>cat: inst/SVN_VERSION: No such file or directory
>configure: svn revision: 
>checking for geos-config... /usr/bin/geos-config
>checking geos-config usability... yes
>configure: GEOS version: 3.12.0
>checking geos version at least 3.2.0... yes
>checking geos-config clibs... yes
>checking geos_c.h  presence and usability... yes
>checking geos: linking with libgeos_c... yes
>configure: PKG_CPPFLAGS:  -I/usr/include
>configure: PKG_LIBS:  -L/usr/lib64 -lgeos_c
>configure: creating ./config.status
>config.status: creating src/Makevars
>** libs
>using C compiler: 'gcc (GCC) 13.1.1 20230614 (Red Hat 13.1.1-4)'
>using C++ compiler: 'g++ (GCC) 13.1.1 20230614 (Red Hat 13.1.1-4)'
>g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c dummy.cc -o dummy.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c init.c -o init.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c local_stubs.c -o local_stubs.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos.c -o rgeos.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_R2geos.c -o rgeos_R2geos.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_R2geosMP.c -o rgeos_R2geosMP.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_bbox.c -o rgeos_bbox.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_buffer.c -o rgeos_buffer.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_coord.c -o rgeos_coord.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_geos2R.c -o rgeos_geos2R.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_linearref.c -o rgeos_linearref.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_misc.c -o rgeos_misc.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_poly2nb.c -o rgeos_poly2nb.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_predicate_binary.c -o rgeos_predicate_binary.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_predicate_unary.c -o rgeos_predicate_unary.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_topology.c -o rgeos_topology.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_topology_binary.c -o rgeos_topology_binary.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_validate.c -o rgeos_validate.o
>gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I'/usr/lib64/R/library/sp/include' -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rgeos_wkt.c -o rgeos_wkt.o
>g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o rgeos.so dummy.o init.o local_stubs.o rgeos.o rgeos_R2geos.o rgeos_R2geosMP.o rgeos_bbox.o rgeos_buffer.o rgeos_coord.o rgeos_geos2R.o rgeos_linearref.o rgeos_misc.o rgeos_poly2nb.o rgeos_predicate_binary.o rgeos_predicate_unary.o rgeos_topology.o rgeos_topology_binary.o rgeos_validate.o rgeos_wkt.o -L/usr/lib64 -lgeos_c -L/usr/lib64/R/lib -lR
>installing to /builddir/build/BUILDROOT/R-rgeos-0.6.3-2.fc39.aarch64/usr/lib64/R/library/00LOCK-rgeos/00new/rgeos/libs
>** R
>** inst
>** byte-compile and prepare package for lazy loading
>** help
>*** installing help indices
>  converting help for package 'rgeos'
>    finding HTML links ... done
>    bbox2SP                                 html  
>    class-Ring                              html  
>    class-SpatialCollections                html  
>    finding level-2 HTML links ... done
>    class-SpatialRings                      html  
>    class-SpatialRingsDataFrame             html  
>    class-gpc.poly                          html  
>    class-gpc.poly.nohole                   html  
>    comment-functions                       html  
>    constructor-SpatialCollections          html  
>    constructor-SpatialRings                html  
>    experimental-functions                  html  
>    gpc-new-generics                        html  
>    gpc-polyfile                            html  
>    labelpt                                 html  
>    linref-gInterpolate                     html  
>    linref-gProject                         html  
>    misc-gArea                              html  
>    misc-gDistance                          html  
>    misc-gLength                            html  
>    misc-gNearestPoints                     html  
>    misc-over                               html  
>    pred-binary-gContains                   html  
>    pred-binary-gCrosses                    html  
>    pred-binary-gEquals                     html  
>    pred-binary-gIntersects                 html  
>    pred-binary-gRelate                     html  
>    pred-binary-gTouches                    html  
>    pred-unary-gIsEmpty                     html  
>    pred-unary-gIsRing                      html  
>    pred-unary-gIsSimple                    html  
>    pred-unary-gIsValid                     html  
>    rgeos-deprecated                        html  
>    topo-bin-gUnion                         html  
>    topo-unary-gBoundary                    html  
>    topo-unary-gCentroid                    html  
>    topo-unary-gConvexHull                  html  
>    topo-unary-gCoverageUnion               html  
>    topo-unary-gDelaunayTriangulation       html  
>    topo-unary-gEnvelope                    html  
>    topo-unary-gMakeValid                   html  
>    topo-unary-gMaximumInscribedCircle      html  
>    topo-unary-gMinumumRotatedRectangle     html  
>    topo-unary-gNode                        html  
>    topo-unary-gPointOnSurface              html  
>    topo-unary-gPolygonize                  html  
>    topo-unary-gSimplify                    html  
>    utility-functions                       html  
>    wkt-functions                           html  
>** building package indices
>** testing if installed package can be loaded from temporary location
>** checking absolute paths in shared objects and dynamic libraries
>** testing if installed package can be loaded from final location
>** testing if installed package keeps a record of temporary installation path
>* DONE (rgeos)
>+ test -d rgeos/src
>+ cd rgeos/src
>+ rm -f dummy.o init.o local_stubs.o rgeos.o rgeos_R2geos.o rgeos_R2geosMP.o rgeos_bbox.o rgeos_buffer.o rgeos_coord.o rgeos_geos2R.o rgeos_linearref.o rgeos_misc.o rgeos_poly2nb.o rgeos_predicate_binary.o rgeos_predicate_unary.o rgeos_topology.o rgeos_topology_binary.o rgeos_validate.o rgeos_wkt.o rgeos.so
>+ rm -f /builddir/build/BUILDROOT/R-rgeos-0.6.3-2.fc39.aarch64/usr/lib64/R/library/R.css
>+ /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 0.6.3-2.fc39 --unique-debug-suffix -0.6.3-2.fc39.aarch64 --unique-debug-src-base R-rgeos-0.6.3-2.fc39.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/rgeos
>find-debuginfo: starting
>Extracting debug info from 1 files
>DWARF-compressing 1 files
>sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
>Creating .debug symlinks for symlinks to ELF files
>Copying sources found by 'debugedit -l' to /usr/src/debug/R-rgeos-0.6.3-2.fc39.aarch64
>296 blocks
>find-debuginfo: done
>+ /usr/lib/rpm/check-buildroot
>+ /usr/lib/rpm/redhat/brp-ldconfig
>+ /usr/lib/rpm/brp-compress
>+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
>+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
>+ /usr/lib/rpm/check-rpaths
>+ /usr/lib/rpm/redhat/brp-mangle-shebangs
>+ /usr/lib/rpm/brp-remove-la-files
>+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8
>+ /usr/lib/rpm/redhat/brp-python-hardlink
>Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.8mxMZl
>+ umask 022
>+ cd /builddir/build/BUILD
>+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
>+ export CFLAGS
>+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
>+ export CXXFLAGS
>+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
>+ export FFLAGS
>+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
>+ export FCFLAGS
>+ VALAFLAGS=-g
>+ export VALAFLAGS
>+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
>+ export RUSTFLAGS
>+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
>+ export LDFLAGS
>+ LT_SYS_LIBRARY_PATH=/usr/lib64:
>+ export LT_SYS_LIBRARY_PATH
>+ CC=gcc
>+ export CC
>+ CXX=g++
>+ export CXX
>+ cd rgeos
>+ _R_CHECK_FORCE_SUGGESTS_=0
>+ /usr/bin/R CMD check rgeos
>* using log directory '/builddir/build/BUILD/rgeos/rgeos.Rcheck'
>* using R version 4.3.1 (2023-06-16)
>* using platform: aarch64-redhat-linux-gnu (64-bit)
>* R was compiled by
>    gcc (GCC) 13.1.1 20230614 (Red Hat 13.1.1-4)
>    GNU Fortran (GCC) 13.1.1 20230614 (Red Hat 13.1.1-4)
>* running under: Fedora Linux 39 (Rawhide Prerelease)
>* using session charset: ASCII
>* checking for file 'rgeos/DESCRIPTION' ... OK
>* this is package 'rgeos' version '0.6-3'
>* checking package namespace information ... OK
>* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
>  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
>Warning: unable to access index for repository https://bioconductor.org/packages/3.17/bioc/src/contrib:
>  cannot open URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/PACKAGES'
>Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/src/contrib:
>  cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/src/contrib/PACKAGES'
>Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/src/contrib:
>  cannot open URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/PACKAGES'
> NOTE
>Packages suggested but not available for checking: 'maptools', 'maps'
>* checking if this is a source package ... OK
>* checking if there is a namespace ... OK
>* checking for executable files ... OK
>* checking for hidden files and directories ... OK
>* checking for portable file names ... OK
>* checking for sufficient/correct file permissions ... OK
>* checking whether package 'rgeos' can be installed ... OK
>* used C compiler: 'gcc (GCC) 13.1.1 20230614 (Red Hat 13.1.1-4)'
>* used C++ compiler: 'g++ (GCC) 13.1.1 20230614 (Red Hat 13.1.1-4)'
>* checking installed package size ... OK
>* checking package directory ... OK
>* checking DESCRIPTION meta-information ... OK
>* checking top-level files ... OK
>* checking for left-over files ... OK
>* checking index information ... OK
>* checking package subdirectories ... OK
>* checking R files for non-ASCII characters ... OK
>* checking R files for syntax errors ... OK
>* checking whether the package can be loaded ... OK
>* checking whether the package can be loaded with stated dependencies ... OK
>* checking whether the package can be unloaded cleanly ... OK
>* checking whether the namespace can be loaded with stated dependencies ... OK
>* checking whether the namespace can be unloaded cleanly ... OK
>* checking loading without being on the library search path ... OK
>* checking startup messages can be suppressed ... OK
>* checking dependencies in R code ... OK
>* checking S3 generic/method consistency ... OK
>* checking replacement functions ... OK
>* checking foreign function calls ... OK
>* checking R code for possible problems ... OK
>* checking Rd files ... OK
>* checking Rd metadata ... OK
>* checking Rd cross-references ... NOTE
>Unknown package 'maptools' in Rd xrefs
>* checking for missing documentation entries ... OK
>* checking for code/documentation mismatches ... OK
>* checking Rd \usage sections ... OK
>* checking Rd contents ... OK
>* checking for unstated dependencies in examples ... OK
>* checking line endings in shell scripts ... OK
>* checking line endings in C/C++/Fortran sources/headers ... OK
>* checking line endings in Makefiles ... OK
>* checking compilation flags in Makevars ... NOTE
>Package has both 'src/Makevars.in' and 'src/Makevars'.
>Installation with --no-configure' is unlikely to work.  If you intended
>'src/Makevars' to be used on Windows, rename it to 'src/Makevars.win'
>otherwise remove it.  If 'configure' created 'src/Makevars', you need a
>'cleanup' script.
>* checking for GNU extensions in Makefiles ... OK
>* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
>* checking use of PKG_*FLAGS in Makefiles ... OK
>* checking compiled code ... OK
>* checking examples ... OK
>* checking for unstated dependencies in 'tests' ... OK
>* checking tests ...
>  Running 'DP_simplify.R'
>  Comparing 'DP_simplify.Rout' to 'DP_simplify.Rout.save' ... OK
>  Running 'leak_by_exception.R'
>  Comparing 'leak_by_exception.Rout' to 'leak_by_exception.Rout.save' ...12c12
><   TopologyException: side location conflict at 5 5. This can occur if the input geometry is invalid.
>---
>>   TopologyException: Input geom 0 is invalid: Self-intersection at 5 5
>22c22
><   TopologyException: side location conflict at 5 5. This can occur if the input geometry is invalid.
>---
>>   TopologyException: Input geom 0 is invalid: Self-intersection at 5 5
>32c32
><   TopologyException: side location conflict at 5 5. This can occur if the input geometry is invalid.
>---
>>   TopologyException: Input geom 0 is invalid: Self-intersection at 5 5
>42c42
><   TopologyException: side location conflict at 5 5. This can occur if the input geometry is invalid.
>---
>>   TopologyException: Input geom 0 is invalid: Self-intersection at 5 5
>  Running 'test-all.R'
> ERROR
>Running the tests in 'tests/test-all.R' failed.
>Last 13 lines of output:
>  == Failed tests ================================================================
>  -- Error ('test-misc.R:50:3'): gNearestPoints works with different geometries as inputs --
>  Error: Unable to parse: MULTIPOLYGON(((34 54, 60 34, 60 54, 34 54),                               (50 50, 52 50, 52 48, 50 48, 50 50)),                              ((100 100, 150 100, 150 150, 100 150, 100 100),                               (120 120, 120 130, 130 130, 130 120, 120 120))))
>  GEOS reported: "rgeos_readWKT: unable to read wkt"
>  Backtrace:
>      x
>   1. \-rgeos::readWKT("MULTIPOLYGON(((34 54, 60 34, 60 54, 34 54),\n                               (50 50, 52 50, 52 48, 50 48, 50 50)),\n                              ((100 100, 150 100, 150 150, 100 150, 100 100),\n                               (120 120, 120 130, 130 130, 130 120, 120 120))))") at test-misc.R:50:2
>   2.   \-base::tryCatch(...)
>   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
>   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
>   5.         \-value[[3L]](cond)
>  
>  [ FAIL 1 | WARN 28 | SKIP 0 | PASS 116 ]
>  Error: Test failures
>  Execution halted
>* checking PDF version of manual ... WARNING
>LaTeX errors when creating PDF version.
>This typically indicates Rd problems.
>LaTeX errors found:
>! LaTeX Error: File `inconsolata.sty' not found.
>Type X to quit or <RETURN> to proceed,
>or enter new name. (Default extension: sty)
>! Emergency stop.
><read *> 
>         
>l.303 ^^M
>         
>!  ==> Fatal error occurred, no output PDF file produced!
>* checking PDF version of manual without index ... OK
>* DONE
>Status: 1 ERROR, 1 WARNING, 3 NOTEs
>See
>  '/builddir/build/BUILD/rgeos/rgeos.Rcheck/00check.log'
>for details.
>RPM build errors:
>error: Bad exit status from /var/tmp/rpm-tmp.8mxMZl (%check)
>    Bad exit status from /var/tmp/rpm-tmp.8mxMZl (%check)
>Child return code was: 1
>EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M 3c7a9e2fb4684aa49e1d2371af280f6e -D /var/lib/mock/f39-build-44256688-5274311/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.b15n1jks:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007" --setenv=PS1=<mock-chroot> \\s-\\v\\$  --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-rgeos.spec\n', 1)]
>Traceback (most recent call last):
>  File "/usr/lib/python3.11/site-packages/mockbuild/trace_decorator.py", line 93, in trace
>    result = func(*args, **kw)
>             ^^^^^^^^^^^^^^^^^
>  File "/usr/lib/python3.11/site-packages/mockbuild/util.py", line 597, in do_with_status
>    raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode)
>mockbuild.exception.Error: Command failed: 
> # /usr/bin/systemd-nspawn -q -M 3c7a9e2fb4684aa49e1d2371af280f6e -D /var/lib/mock/f39-build-44256688-5274311/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.b15n1jks:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007" --setenv=PS1=<mock-chroot> \s-\v\$  --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-rgeos.spec
>

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Attachments on bug 2225691: 1977550 | 1977551 | 1977552