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Red Hat Bugzilla – Attachment 1977553 Details for
Bug 2225692
R-rmarkdown: FTBFS in Fedora rawhide/f39
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build.log
build.log (text/plain), 32.00 KB, created by
Fedora Release Engineering
on 2023-07-25 17:07:59 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Fedora Release Engineering
Created:
2023-07-25 17:07:59 UTC
Size:
32.00 KB
patch
obsolete
>/bootstrap/css/fonts/RobotoLight.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/RobotoLight.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/RobotoMedium.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/RobotoMedium.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/SourceSansPro-Bold.otf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/SourceSansPro-It.otf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/SourceSansPro-Light.otf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/SourceSansPro-Regular.otf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/SourceSansPro.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/SourceSansProBold.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/SourceSansProItalic.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/SourceSansProLight.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/journal.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/lumen.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/lumen.min.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/paper.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/readable.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/readable.min.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/sandstone.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/simplex.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/spacelab.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/united.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/yeti.css cleanly. >Applied patch inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.eot cleanly. >Applied patch inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.svg cleanly. >Applied patch inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.woff cleanly. >Applied patch inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.woff2 cleanly. >+ /usr/bin/git commit -q -m 0005-Unbundle-fonts-from-bootstrap.patch --author 'rpm-build <rpm-build>' >+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0006-Add-source-for-code-prettify.patch >+ /usr/bin/git apply --index --reject - ><stdin>:269: trailing whitespace. > var C_KEYWORDS = [FLOW_CONTROL_KEYWORDS,"auto,case,char,const,default," + ><stdin>:386: trailing whitespace. > ><stdin>:387: trailing whitespace. > ><stdin>:408: trailing whitespace. > ><stdin>:425: trailing whitespace. > >Checking patch inst/rmd/ioslides/ioslides-13.5.1/js/prettify/src/lang-tex.js... >Checking patch inst/rmd/ioslides/ioslides-13.5.1/js/prettify/src/lang-yaml.js... >Checking patch inst/rmd/ioslides/ioslides-13.5.1/js/prettify/src/prettify.css... >Checking patch inst/rmd/ioslides/ioslides-13.5.1/js/prettify/src/prettify.js... >Applied patch inst/rmd/ioslides/ioslides-13.5.1/js/prettify/src/lang-tex.js cleanly. >Applied patch inst/rmd/ioslides/ioslides-13.5.1/js/prettify/src/lang-yaml.js cleanly. >Applied patch inst/rmd/ioslides/ioslides-13.5.1/js/prettify/src/prettify.css cleanly. >Applied patch inst/rmd/ioslides/ioslides-13.5.1/js/prettify/src/prettify.js cleanly. >warning: squelched 46 whitespace errors >warning: 51 lines add whitespace errors. >+ /usr/bin/git commit -q -m 0006-Add-source-for-code-prettify.patch --author 'rpm-build <rpm-build>' >+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0007-Skip-shiny-tests.patch >+ /usr/bin/git apply --index --reject - >Checking patch tests/testthat/test-params.R... >Applied patch tests/testthat/test-params.R cleanly. >+ /usr/bin/git commit -q -m 0007-Skip-shiny-tests.patch --author 'rpm-build <rpm-build>' >+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0008-handle-updated-Raleway-fonts-in-f33.patch >+ /usr/bin/git apply --index --reject - >Checking patch inst/rmd/h/bootstrap/css/fonts/Raleway-Bold.otf... >Checking patch inst/rmd/h/bootstrap/css/fonts/Raleway-Bold.ttf... >Checking patch inst/rmd/h/bootstrap/css/fonts/Raleway-Regular.otf... >Checking patch inst/rmd/h/bootstrap/css/fonts/Raleway-Regular.ttf... >Checking patch inst/rmd/h/bootstrap/css/readable.css... >Checking patch inst/rmd/h/bootstrap/css/readable.min.css... >Applied patch inst/rmd/h/bootstrap/css/fonts/Raleway-Bold.otf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/Raleway-Bold.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/Raleway-Regular.otf cleanly. >Applied patch inst/rmd/h/bootstrap/css/fonts/Raleway-Regular.ttf cleanly. >Applied patch inst/rmd/h/bootstrap/css/readable.css cleanly. >Applied patch inst/rmd/h/bootstrap/css/readable.min.css cleanly. >+ /usr/bin/git commit -q -m 0008-handle-updated-Raleway-fonts-in-f33.patch --author 'rpm-build <rpm-build>' >+ rm inst/rmd/h/bootstrap/css/fonts/Ubuntu.ttf >+ chmod -x inst/rmd/h/ionicons/LICENSE inst/rmd/h/ionicons/css/ionicons.css inst/rmd/h/ionicons/css/ionicons.min.css inst/rmd/h/ionicons/fonts/ionicons.ttf >+ chmod -x inst/rmd/ioslides/ioslides-13.5.1/js/hammer.js >+ for f in Bold It Light Regular >+ ln -sf /usr/share/fonts/adobe-source-sans-pro-fonts/SourceSans3-Bold.otf inst/rmd/h/bootstrap/css/fonts/SourceSansPro-Bold.otf >+ for f in Bold It Light Regular >+ ln -sf /usr/share/fonts/adobe-source-sans-pro-fonts/SourceSans3-It.otf inst/rmd/h/bootstrap/css/fonts/SourceSansPro-It.otf >+ for f in Bold It Light Regular >+ ln -sf /usr/share/fonts/adobe-source-sans-pro-fonts/SourceSans3-Light.otf inst/rmd/h/bootstrap/css/fonts/SourceSansPro-Light.otf >+ for f in Bold It Light Regular >+ ln -sf /usr/share/fonts/adobe-source-sans-pro-fonts/SourceSans3-Regular.otf inst/rmd/h/bootstrap/css/fonts/SourceSansPro-Regular.otf >+ cd /builddir/build/BUILD >+ cd rmarkdown >+ /usr/bin/mkdir -p SPECPARTS >+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . >+ RPM_EC=0 >++ jobs -p >+ exit 0 >Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YNLWjV >+ umask 022 >+ cd /builddir/build/BUILD >+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' >+ export CFLAGS >+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' >+ export CXXFLAGS >+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' >+ export FFLAGS >+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' >+ export FCFLAGS >+ VALAFLAGS=-g >+ export VALAFLAGS >+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' >+ export RUSTFLAGS >+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' >+ export LDFLAGS >+ LT_SYS_LIBRARY_PATH=/usr/lib: >+ export LT_SYS_LIBRARY_PATH >+ CC=gcc >+ export CC >+ CXX=g++ >+ export CXX >+ cd rmarkdown >+ gominify --type css >+ pushd rmarkdown/inst/rmd/h/bootstrap/css/ >~/build/BUILD/rmarkdown/rmarkdown/inst/rmd/h/bootstrap/css ~/build/BUILD/rmarkdown >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ for file in bootstrap bootstrap-theme cerulean cosmo darkly flatly journal lumen paper readable sandstone simplex spacelab united yeti >+ gominify --type css >+ popd >+ RPM_EC=0 >~/build/BUILD/rmarkdown >++ jobs -p >+ exit 0 >Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.M9eHgj >+ umask 022 >+ cd /builddir/build/BUILD >+ '[' /builddir/build/BUILDROOT/R-rmarkdown-2.22-2.fc39.noarch '!=' / ']' >+ rm -rf /builddir/build/BUILDROOT/R-rmarkdown-2.22-2.fc39.noarch >++ dirname /builddir/build/BUILDROOT/R-rmarkdown-2.22-2.fc39.noarch >+ mkdir -p /builddir/build/BUILDROOT >+ mkdir /builddir/build/BUILDROOT/R-rmarkdown-2.22-2.fc39.noarch >+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' >+ export CFLAGS >+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' >+ export CXXFLAGS >+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' >+ export FFLAGS >+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' >+ export FCFLAGS >+ VALAFLAGS=-g >+ export VALAFLAGS >+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' >+ export RUSTFLAGS >+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' >+ export LDFLAGS >+ LT_SYS_LIBRARY_PATH=/usr/lib: >+ export LT_SYS_LIBRARY_PATH >+ CC=gcc >+ export CC >+ CXX=g++ >+ export CXX >+ cd rmarkdown >+ mkdir -p /builddir/build/BUILDROOT/R-rmarkdown-2.22-2.fc39.noarch/usr/share/R/library >+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-rmarkdown-2.22-2.fc39.noarch/usr/share/R/library rmarkdown >* installing *source* package 'rmarkdown' ... >files 'inst/rmd/h/bootstrap/css/fonts/Raleway.ttf', 'inst/rmd/h/bootstrap/css/fonts/RalewayBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/SourceSansPro.ttf', 'inst/rmd/h/bootstrap/css/fonts/SourceSansProBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/SourceSansProItalic.ttf', 'inst/rmd/h/bootstrap/css/fonts/SourceSansProLight.ttf', 'inst/rmd/h/bootstrap/css/fonts/Ubuntu.ttf', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.eot', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.svg', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.woff', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.woff2', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/OpenSans.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/OpenSansItalic.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/OpenSansSemibold.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/OpenSansSemiboldItalic.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/SourceCodePro.ttf', 'inst/rmd/ioslides/ioslides-13.5.1/js/order.js', 'inst/rmd/ioslides/ioslides-13.5.1/js/polyfills/classList.min.js', 'inst/rmd/ioslides/ioslides-13.5.1/js/polyfills/dataset.min.js', 'inst/rmd/ioslides/ioslides-13.5.1/js/polyfills/history.min.js', 'inst/rmd/ioslides/ioslides-13.5.1/js/require-1.0.8.min.js' are missing >files 'inst/rmd/h/bootstrap/css/bootstrap-theme.min.css', 'inst/rmd/h/bootstrap/css/bootstrap.css', 'inst/rmd/h/bootstrap/css/bootstrap.min.css', 'inst/rmd/h/bootstrap/css/cerulean.min.css', 'inst/rmd/h/bootstrap/css/cosmo.min.css', 'inst/rmd/h/bootstrap/css/darkly.min.css', 'inst/rmd/h/bootstrap/css/flatly.min.css', 'NA', 'NA', 'NA', 'inst/rmd/h/bootstrap/css/fonts/NewsCycle.ttf', 'inst/rmd/h/bootstrap/css/fonts/NewsCycleBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSans.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansBoldItalic.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansItalic.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansLight.ttf', 'inst/rmd/h/bootstrap/css/fonts/OpenSansLightItalic.ttf', 'inst/rmd/h/bootstrap/css/fonts/Roboto.ttf', 'inst/rmd/h/bootstrap/css/fonts/RobotoBold.ttf', 'inst/rmd/h/bootstrap/css/fonts/RobotoLight.ttf', 'inst/rmd/h/bootstrap/css/fonts/RobotoMedium.ttf', 'inst/rmd/h/bootstrap/css/journal.min.css', 'inst/rmd/h/bootstrap/css/lumen.min.css', 'inst/rmd/h/bootstrap/css/paper.min.css', 'inst/rmd/h/bootstrap/css/readable.min.css', 'inst/rmd/h/bootstrap/css/sandstone.min.css', 'inst/rmd/h/bootstrap/css/simplex.min.css', 'inst/rmd/h/bootstrap/css/spacelab.min.css', 'inst/rmd/h/bootstrap/css/united.min.css', 'inst/rmd/h/bootstrap/css/yeti.min.css', 'inst/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.ttf', 'inst/rmd/h/ionicons/css/ionicons.min.css', 'inst/rmd/ioslides/ioslides-13.5.1/fonts/fonts.css', 'tests/testthat/test-params.R' have the wrong MD5 checksums >** using staged installation >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices > converting help for package 'rmarkdown' > finding HTML links ... done > all_output_formats html > available_templates html > beamer_presentation html > compile_notebook html > context_document html > convert_ipynb html > default_output_format html > draft html > find_external_resources html > find_pandoc html > github_document html > html-dependencies html > html_document html > html_document_base html > html_fragment html > html_notebook html > html_notebook_metadata html > html_notebook_output html > html_vignette html > includes html > ioslides_presentation html > knit_params_ask html > knitr_options html > knitr_options_html html > knitr_options_pdf html > latex-dependencies html > latex_dependency html > md_document html > metadata html > navbar_html html > odt_document html > output_format html > output_metadata html > paged_table html > pandoc_args html > pandoc_available html > pandoc_citeproc_convert html > pandoc_convert html > pandoc_exec html > pandoc_options html > pandoc_path_arg html > pandoc_self_contained_html html > pandoc_template html > parse_html_notebook html > pdf_document html > pkg_file_lua html > powerpoint_presentation html > publish_site html > relative_to html > render html > render_delayed html > render_site html > render_supporting_files html > resolve_output_format html > rmarkdown-package html > rmarkdown_format html > rmd_metadata html > rtf_document html > run html > shiny_prerendered_chunk html > shiny_prerendered_clean html > shiny_prerendered_server_start_code html > site_resources html > slidy_presentation html > word_document html > yaml_front_matter html >*** copying figures >** building package indices >** installing vignettes >** testing if installed package can be loaded from temporary location >** testing if installed package can be loaded from final location >** testing if installed package keeps a record of temporary installation path >* DONE (rmarkdown) >+ test -d rmarkdown/src >+ rm -f /builddir/build/BUILDROOT/R-rmarkdown-2.22-2.fc39.noarch/usr/share/R/library/R.css >+ pushd /builddir/build/BUILDROOT/R-rmarkdown-2.22-2.fc39.noarch/usr/share/R/library/rmarkdown >~/build/BUILDROOT/R-rmarkdown-2.22-2.fc39.noarch/usr/share/R/library/rmarkdown ~/build/BUILD/rmarkdown >+ rm rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Italic.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Regular.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Semibold.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-SemiboldItalic.ttf >+ for f in OpenSans-Regular OpenSans-Italic OpenSans-Semibold OpenSans-SemiboldItalic >+ ln -s /usr/share/fonts/open-sans/OpenSans-Regular.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Regular.ttf >+ for f in OpenSans-Regular OpenSans-Italic OpenSans-Semibold OpenSans-SemiboldItalic >+ ln -s /usr/share/fonts/open-sans/OpenSans-Italic.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Italic.ttf >+ for f in OpenSans-Regular OpenSans-Italic OpenSans-Semibold OpenSans-SemiboldItalic >+ ln -s /usr/share/fonts/open-sans/OpenSans-Semibold.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-Semibold.ttf >+ for f in OpenSans-Regular OpenSans-Italic OpenSans-Semibold OpenSans-SemiboldItalic >+ ln -s /usr/share/fonts/open-sans/OpenSans-SemiboldItalic.ttf rmd/ioslides/ioslides-13.5.1/fonts/OpenSans-SemiboldItalic.ttf >+ ln -sf /usr/share/fonts/adobe-source-code-pro/SourceCodePro-Regular.otf rmd/ioslides/ioslides-13.5.1/fonts/SourceCodePro-Regular.otf >+ ln -sf /usr/share/fonts/lato/Lato-Regular.ttf rmd/h/bootstrap/css/fonts/Lato.ttf >+ ln -sf /usr/share/fonts/lato/Lato-Bold.ttf rmd/h/bootstrap/css/fonts/LatoBold.ttf >+ ln -sf /usr/share/fonts/lato/Lato-Italic.ttf rmd/h/bootstrap/css/fonts/LatoItalic.ttf >+ ln -sf /usr/share/fonts/glyphography-newscycle-fonts/newscycle-regular.ttf rmd/h/bootstrap/css/fonts/NewsCycle.ttf >+ ln -sf /usr/share/fonts/glyphography-newscycle-fonts/newscycle-bold.ttf rmd/h/bootstrap/css/fonts/NewsCycleBold.ttf >+ ln -sf /usr/share/fonts/open-sans/OpenSans-Regular.ttf rmd/h/bootstrap/css/fonts/OpenSans.ttf >+ for f in Bold BoldItalic Italic Light LightItalic >+ ln -sf /usr/share/fonts/open-sans/OpenSans-Bold.ttf rmd/h/bootstrap/css/fonts/OpenSansBold.ttf >+ for f in Bold BoldItalic Italic Light LightItalic >+ ln -sf /usr/share/fonts/open-sans/OpenSans-BoldItalic.ttf rmd/h/bootstrap/css/fonts/OpenSansBoldItalic.ttf >+ for f in Bold BoldItalic Italic Light LightItalic >+ ln -sf /usr/share/fonts/open-sans/OpenSans-Italic.ttf rmd/h/bootstrap/css/fonts/OpenSansItalic.ttf >+ for f in Bold BoldItalic Italic Light LightItalic >+ ln -sf /usr/share/fonts/open-sans/OpenSans-Light.ttf rmd/h/bootstrap/css/fonts/OpenSansLight.ttf >+ for f in Bold BoldItalic Italic Light LightItalic >+ ln -sf /usr/share/fonts/open-sans/OpenSans-LightItalic.ttf rmd/h/bootstrap/css/fonts/OpenSansLightItalic.ttf >+ for f in Regular Bold >+ ln -sf /usr/share/fonts/impallari-raleway-fonts/Raleway-Regular.ttf rmd/h/bootstrap/css/fonts/Raleway-Regular.ttf >+ for f in Regular Bold >+ ln -sf /usr/share/fonts/impallari-raleway-fonts/Raleway-Bold.ttf rmd/h/bootstrap/css/fonts/Raleway-Bold.ttf >+ ln -sf /usr/share/fonts/google-roboto/Roboto-Regular.ttf rmd/h/bootstrap/css/fonts/Roboto.ttf >+ for f in Light Medium Bold >+ ln -sf /usr/share/fonts/google-roboto/Roboto-Light.ttf rmd/h/bootstrap/css/fonts/RobotoLight.ttf >+ for f in Light Medium Bold >+ ln -sf /usr/share/fonts/google-roboto/Roboto-Medium.ttf rmd/h/bootstrap/css/fonts/RobotoMedium.ttf >+ for f in Light Medium Bold >+ ln -sf /usr/share/fonts/google-roboto/Roboto-Bold.ttf rmd/h/bootstrap/css/fonts/RobotoBold.ttf >+ for f in Bold It Light Regular >+ ln -sf /usr/share/fonts/adobe-source-sans-pro-fonts/SourceSans3-Bold.otf rmd/h/bootstrap/css/fonts/SourceSansPro-Bold.otf >+ for f in Bold It Light Regular >+ ln -sf /usr/share/fonts/adobe-source-sans-pro-fonts/SourceSans3-It.otf rmd/h/bootstrap/css/fonts/SourceSansPro-It.otf >+ for f in Bold It Light Regular >+ ln -sf /usr/share/fonts/adobe-source-sans-pro-fonts/SourceSans3-Light.otf rmd/h/bootstrap/css/fonts/SourceSansPro-Light.otf >+ for f in Bold It Light Regular >+ ln -sf /usr/share/fonts/adobe-source-sans-pro-fonts/SourceSans3-Regular.otf rmd/h/bootstrap/css/fonts/SourceSansPro-Regular.otf >+ ln -sf /usr/share/fonts/glyphicons-halflings/glyphicons-halflings-regular.ttf rmd/h/bootstrap/fonts/glyphicons-halflings-regular.ttf >+ popd >~/build/BUILD/rmarkdown >+ /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 2.22-2.fc39 --unique-debug-suffix -2.22-2.fc39.noarch --unique-debug-src-base R-rmarkdown-2.22-2.fc39.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/rmarkdown >find-debuginfo: starting >Extracting debug info from 0 files >Creating .debug symlinks for symlinks to ELF files >find-debuginfo: done >+ /usr/lib/rpm/check-buildroot >+ /usr/lib/rpm/redhat/brp-ldconfig >+ /usr/lib/rpm/brp-compress >+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip >+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip >+ /usr/lib/rpm/check-rpaths >+ /usr/lib/rpm/redhat/brp-mangle-shebangs >*** WARNING: ./usr/share/R/library/rmarkdown/rmd/latex/subtitle.tex is executable but has no shebang, removing executable bit >+ /usr/lib/rpm/brp-remove-la-files >+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8 >+ /usr/lib/rpm/redhat/brp-python-hardlink >Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.CMLEzy >+ umask 022 >+ cd /builddir/build/BUILD >+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' >+ export CFLAGS >+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' >+ export CXXFLAGS >+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' >+ export FFLAGS >+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' >+ export FCFLAGS >+ VALAFLAGS=-g >+ export VALAFLAGS >+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' >+ export RUSTFLAGS >+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' >+ export LDFLAGS >+ LT_SYS_LIBRARY_PATH=/usr/lib: >+ export LT_SYS_LIBRARY_PATH >+ CC=gcc >+ export CC >+ CXX=g++ >+ export CXX >+ cd rmarkdown >+ _R_CHECK_FORCE_SUGGESTS_=0 >+ /usr/bin/R CMD check --ignore-vignettes rmarkdown --no-tests >* using log directory '/builddir/build/BUILD/rmarkdown/rmarkdown.Rcheck' >* using R version 4.3.1 (2023-06-16) >* using platform: aarch64-redhat-linux-gnu (64-bit) >* R was compiled by > gcc (GCC) 13.1.1 20230614 (Red Hat 13.1.1-4) > GNU Fortran (GCC) 13.1.1 20230614 (Red Hat 13.1.1-4) >* running under: Fedora Linux 39 (Rawhide Prerelease) >* using session charset: ASCII >* using options '--no-tests --ignore-vignettes' >* checking for file 'rmarkdown/DESCRIPTION' ... OK >* checking extension type ... Package >* this is package 'rmarkdown' version '2.22' >* package encoding: UTF-8 >* checking package namespace information ... OK >* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: > cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' >Warning: unable to access index for repository https://bioconductor.org/packages/3.17/bioc/src/contrib: > cannot open URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/PACKAGES' >Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/src/contrib: > cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/src/contrib/PACKAGES' >Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/src/contrib: > cannot open URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/PACKAGES' > NOTE >Packages suggested but not available for checking: > 'dygraphs', 'rsconnect', 'downlit', 'katex', 'shiny', 'testthat', > 'tibble', 'withr' >* checking if this is a source package ... OK >* checking if there is a namespace ... OK >* checking for executable files ...Warning in file(con, "rb") : > cannot open file 'inst/rmd/h/bootstrap/css/fonts/Lato.ttf': No such file or directory >Error in file(con, "rb") : cannot open the connection >Execution halted >RPM build errors: >error: Bad exit status from /var/tmp/rpm-tmp.CMLEzy (%check) > Bad exit status from /var/tmp/rpm-tmp.CMLEzy (%check) >Child return code was: 1 >EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M c6e1c65fcbbe43baac636a1fb8f3c801 -D /var/lib/mock/f39-build-44256691-5274311/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.dmo1wljz:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007" --setenv=PS1=<mock-chroot> \\s-\\v\\$ --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target noarch --nodeps /builddir/build/SPECS/R-rmarkdown.spec\n', 1)] >Traceback (most recent call last): > File "/usr/lib/python3.11/site-packages/mockbuild/trace_decorator.py", line 93, in trace > result = func(*args, **kw) > ^^^^^^^^^^^^^^^^^ > File "/usr/lib/python3.11/site-packages/mockbuild/util.py", line 597, in do_with_status > raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) >mockbuild.exception.Error: Command failed: > # /usr/bin/systemd-nspawn -q -M c6e1c65fcbbe43baac636a1fb8f3c801 -D /var/lib/mock/f39-build-44256691-5274311/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.dmo1wljz:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007" --setenv=PS1=<mock-chroot> \s-\v\$ --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target noarch --nodeps /builddir/build/SPECS/R-rmarkdown.spec >
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