Attachment 1978162 Details for Bug 2225910 – build.log

build.log

build.log (text/plain), 32.00 KB, created by Fedora Release Engineering on 2023-07-25 18:05:02 UTC

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Creator: Fedora Release Engineering

Created: 2023-07-25 18:05:02 UTC

Size: 32.00 KB

patch

obsolete

>iles/utility-test.dir/range.cpp.o" "CMakeFiles/utility-test.dir/strconvert.cpp.o" "CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o" "CMakeFiles/utility-test.dir/stringutil.cpp.o" "CMakeFiles/utility-test.dir/template_mp.cpp.o" "CMakeFiles/utility-test.dir/textreader.cpp.o" "CMakeFiles/utility-test.dir/textwriter.cpp.o" "CMakeFiles/utility-test.dir/typetraits.cpp.o" "CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-test  -Wl,-rpath,/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.7.0.0 ../../../../lib/libgmock.so.1.11.0 -lm /usr/lib/gcc/x86_64-redhat-linux/13/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.11.0 
>[100%] Linking CXX executable ../../../../bin/mdrun-mpi-coordination-coupling-test
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-coupling-test.dir/link.txt --verbose=1
>/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG   -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "CMakeFiles/mdrun-mpi-coordination-coupling-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-mpi-coordination-coupling-test.dir/periodicactions_coupling.cpp.o" "CMakeFiles/mdrun-mpi-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-coupling-test  -Wl,-rpath,/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.7.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/13/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.11.0 ../../../../lib/libgtest.so.1.11.0 
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target workflow-details-test
>[100%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.txt --verbose=1
>/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG   -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test  -Wl,-rpath,/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.7.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/13/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.11.0 ../../../../lib/libgtest.so.1.11.0 
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target mdrun-fep-test
>[100%] Linking CXX executable ../../../../bin/mdrun-simulator-comparison-test
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-simulator-comparison-test.dir/link.txt --verbose=1
>/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG   -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o" "CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-simulator-comparison-test  -Wl,-rpath,/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.7.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/13/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.11.0 ../../../../lib/libgtest.so.1.11.0 
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target mdrun-mpi-coordination-constraints-test
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target nblib-tpr-test
>[100%] Linking CXX executable ../../../../bin/mdrun-vsites-test
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-vsites-test.dir/link.txt --verbose=1
>/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG   -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o" "CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-vsites-test  -Wl,-rpath,/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.7.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/13/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.11.0 ../../../../lib/libgtest.so.1.11.0 
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target nblib-listed-forces-test
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target gmxapi-test
>[100%] Linking CXX executable ../../../../bin/math-test
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1
>/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG   -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test  -Wl,-rpath,/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.7.0.0 ../../../../lib/libgmock.so.1.11.0 -lm /usr/lib/gcc/x86_64-redhat-linux/13/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.11.0 
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target mdrun-multisim-replex-equivalence-test
>[100%] Linking CXX executable ../../../../bin/mdrun-pull-test
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-pull-test.dir/link.txt --verbose=1
>/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG   -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "CMakeFiles/mdrun-pull-test.dir/pull.cpp.o" "CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-pull-test  -Wl,-rpath,/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.7.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/13/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.11.0 ../../../../lib/libgtest.so.1.11.0 
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target mdrun-mpi-coordination-basic-test
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target utility-test
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target mdrun-mpi-coordination-coupling-test
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target mdrun-vsites-test
>[100%] Built target mdrun-simulator-comparison-test
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target math-test
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target mdrun-pull-test
>[100%] Linking CXX executable ../../../bin/nblib-setup-test
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-setup-test.dir/link.txt --verbose=1
>/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG   -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "CMakeFiles/nblib-setup-test.dir/box.cpp.o" "CMakeFiles/nblib-setup-test.dir/interactions.cpp.o" "CMakeFiles/nblib-setup-test.dir/particletype.cpp.o" "CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o" "CMakeFiles/nblib-setup-test.dir/molecules.cpp.o" "CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o" "CMakeFiles/nblib-setup-test.dir/topology.cpp.o" "CMakeFiles/nblib-setup-test.dir/virials.cpp.o" "CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-setup-test  -Wl,-rpath,/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libmdrun_test_infrastructure.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.11.0 ../../../lib/libgtest.so.1.11.0 ../../../lib/libgromacs.so.7.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/13/libgomp.so /usr/lib64/libpthread.a 
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target nblib-setup-test
>/usr/bin/gmake  -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/depend
>gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/api/nblib /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib-tests.dir/DependInfo.cmake "--color="
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>/usr/bin/gmake  -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/build
>gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>gmake[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib-tests.dir/build'.
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target nblib-tests
>/usr/bin/gmake  -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend
>gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/CMakeFiles/tests.dir/DependInfo.cmake "--color="
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>/usr/bin/gmake  -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build
>gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>gmake[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'.
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Built target tests
>/usr/bin/gmake  -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend
>gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake "--color="
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>/usr/bin/gmake  -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build
>gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>[100%] Running all tests except physical validation
>/usr/bin/ctest --output-on-failure -E physicalvalidationtests
>Test project /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build
>      Start  1: GmxapiExternalInterfaceTests
> 1/87 Test  #1: GmxapiExternalInterfaceTests ...................   Passed    1.78 sec
>      Start  2: GmxapiInternalInterfaceTests
> 2/87 Test  #2: GmxapiInternalInterfaceTests ...................   Passed    0.58 sec
>      Start  3: NbLibListedForcesTests
> 3/87 Test  #3: NbLibListedForcesTests .........................   Passed    0.04 sec
>      Start  4: NbLibSamplesTestArgon
> 4/87 Test  #4: NbLibSamplesTestArgon ..........................   Passed    0.01 sec
>      Start  5: NbLibSamplesTestMethaneWater
> 5/87 Test  #5: NbLibSamplesTestMethaneWater ...................   Passed    0.02 sec
>      Start  6: NbLibUtilTests
> 6/87 Test  #6: NbLibUtilTests .................................   Passed    0.02 sec
>      Start  7: NbLibSetupTests
> 7/87 Test  #7: NbLibSetupTests ................................   Passed    0.02 sec
>      Start  8: NbLibTprTests
> 8/87 Test  #8: NbLibTprTests ..................................   Passed    0.04 sec
>      Start  9: NbLibIntegrationTests
> 9/87 Test  #9: NbLibIntegrationTests ..........................   Passed    0.02 sec
>      Start 10: NbLibIntegratorTests
>10/87 Test #10: NbLibIntegratorTests ...........................   Passed    0.02 sec
>      Start 11: TestUtilsUnitTests
>11/87 Test #11: TestUtilsUnitTests .............................   Passed    0.03 sec
>      Start 12: TestUtilsMpiUnitTests
>12/87 Test #12: TestUtilsMpiUnitTests ..........................   Passed    0.02 sec
>      Start 13: UtilityUnitTests
>13/87 Test #13: UtilityUnitTests ...............................   Passed    0.03 sec
>      Start 14: UtilityMpiUnitTests
>14/87 Test #14: UtilityMpiUnitTests ............................   Passed    0.02 sec
>      Start 15: GmxlibTests
>15/87 Test #15: GmxlibTests ....................................   Passed    0.03 sec
>      Start 16: MdlibUnitTest
>16/87 Test #16: MdlibUnitTest ..................................   Passed    0.07 sec
>      Start 17: AwhTest
>17/87 Test #17: AwhTest ........................................   Passed    0.05 sec
>      Start 18: DensityFittingAppliedForcesUnitTest
>18/87 Test #18: DensityFittingAppliedForcesUnitTest ............   Passed    0.02 sec
>      Start 19: QMMMAppliedForcesUnitTest
>19/87 Test #19: QMMMAppliedForcesUnitTest ......................   Passed    0.05 sec
>      Start 20: AppliedForcesUnitTest
>20/87 Test #20: AppliedForcesUnitTest ..........................   Passed    0.02 sec
>      Start 21: ListedForcesTest
>21/87 Test #21: ListedForcesTest ...............................   Passed    0.03 sec
>      Start 22: NbnxmTests
>22/87 Test #22: NbnxmTests .....................................   Passed    0.02 sec
>      Start 23: CommandLineUnitTests
>23/87 Test #23: CommandLineUnitTests ...........................   Passed    0.02 sec
>      Start 24: DomDecTests
>24/87 Test #24: DomDecTests ....................................   Passed    0.02 sec
>      Start 25: DomDecMpiTests
>25/87 Test #25: DomDecMpiTests .................................   Passed    0.02 sec
>      Start 26: EwaldUnitTests
>26/87 Test #26: EwaldUnitTests .................................   Passed    0.80 sec
>      Start 27: FFTUnitTests
>27/87 Test #27: FFTUnitTests ...................................   Passed    1.06 sec
>      Start 28: GpuUtilsUnitTests
>28/87 Test #28: GpuUtilsUnitTests ..............................   Passed    0.03 sec
>      Start 29: HardwareUnitTests
>29/87 Test #29: HardwareUnitTests ..............................   Passed    0.03 sec
>      Start 30: MathUnitTests
>30/87 Test #30: MathUnitTests ..................................   Passed    0.07 sec
>      Start 31: MdrunUtilityUnitTests
>31/87 Test #31: MdrunUtilityUnitTests ..........................   Passed    0.02 sec
>      Start 32: MdrunUtilityMpiUnitTests
>32/87 Test #32: MdrunUtilityMpiUnitTests .......................   Passed    0.03 sec
>      Start 33: MDSpanTests
>33/87 Test #33: MDSpanTests ....................................   Passed    0.02 sec
>      Start 34: MdtypesUnitTest
>34/87 Test #34: MdtypesUnitTest ................................   Passed    0.03 sec
>      Start 35: OnlineHelpUnitTests
>35/87 Test #35: OnlineHelpUnitTests ............................   Passed    0.02 sec
>      Start 36: OptionsUnitTests
>36/87 Test #36: OptionsUnitTests ...............................   Passed    0.02 sec
>      Start 37: PbcutilUnitTest
>37/87 Test #37: PbcutilUnitTest ................................   Passed    0.02 sec
>      Start 38: RandomUnitTests
>38/87 Test #38: RandomUnitTests ................................   Passed    0.02 sec
>      Start 39: RestraintTests
>39/87 Test #39: RestraintTests .................................   Passed    0.02 sec
>      Start 40: TableUnitTests
>40/87 Test #40: TableUnitTests .................................   Passed    0.08 sec
>      Start 41: TaskAssignmentUnitTests
>41/87 Test #41: TaskAssignmentUnitTests ........................   Passed    0.02 sec
>      Start 42: GmxTimingTests
>42/87 Test #42: GmxTimingTests .................................   Passed    0.02 sec
>      Start 43: TopologyTest
>43/87 Test #43: TopologyTest ...................................   Passed    0.02 sec
>      Start 44: PullTest
>44/87 Test #44: PullTest .......................................   Passed    0.02 sec
>      Start 45: SimdUnitTests
>45/87 Test #45: SimdUnitTests ..................................   Passed    0.05 sec
>      Start 46: CompatibilityHelpersTests
>46/87 Test #46: CompatibilityHelpersTests ......................   Passed    0.02 sec
>      Start 47: GmxAnaTest
>47/87 Test #47: GmxAnaTest .....................................   Passed    0.62 sec
>      Start 48: GmxPreprocessTests
>48/87 Test #48: GmxPreprocessTests .............................   Passed    0.78 sec
>      Start 49: Pdb2gmx1Test
>49/87 Test #49: Pdb2gmx1Test ...................................   Passed    1.33 sec
>      Start 50: Pdb2gmx2Test
>50/87 Test #50: Pdb2gmx2Test ...................................   Passed    1.36 sec
>      Start 51: Pdb2gmx3Test
>51/87 Test #51: Pdb2gmx3Test ...................................   Passed    4.65 sec
>      Start 52: CorrelationsTest
>52/87 Test #52: CorrelationsTest ...............................   Passed    1.88 sec
>      Start 53: AnalysisDataUnitTests
>53/87 Test #53: AnalysisDataUnitTests ..........................   Passed    0.04 sec
>      Start 54: CoordinateIOTests
>54/87 Test #54: CoordinateIOTests ..............................   Passed    0.07 sec
>      Start 55: TrajectoryAnalysisUnitTests
>55/87 Test #55: TrajectoryAnalysisUnitTests ....................   Passed    0.72 sec
>      Start 56: EnergyAnalysisUnitTests
>56/87 Test #56: EnergyAnalysisUnitTests ........................   Passed    0.23 sec
>      Start 57: ToolUnitTests
>57/87 Test #57: ToolUnitTests ..................................   Passed    1.50 sec
>      Start 58: FileIOTests
>58/87 Test #58: FileIOTests ....................................   Passed    0.02 sec
>      Start 59: SelectionUnitTests
>59/87 Test #59: SelectionUnitTests .............................   Passed    0.14 sec
>      Start 60: MdrunOutputTests
>60/87 Test #60: MdrunOutputTests ...............................   Passed    0.12 sec
>      Start 61: MdrunModulesTests
>61/87 Test #61: MdrunModulesTests ..............................   Passed    0.26 sec
>      Start 62: MdrunIOTests
>62/87 Test #62: MdrunIOTests ...................................   Passed    0.14 sec
>      Start 63: MdrunTestsOneRank
>63/87 Test #63: MdrunTestsOneRank ..............................   Passed    1.98 sec
>      Start 64: MdrunTestsTwoRanks
>64/87 Test #64: MdrunTestsTwoRanks .............................   Passed    2.02 sec
>      Start 65: MdrunSingleRankAlgorithmsTests
>65/87 Test #65: MdrunSingleRankAlgorithmsTests .................   Passed    2.64 sec
>      Start 66: MdrunNonIntegratorTests
>66/87 Test #66: MdrunNonIntegratorTests ........................   Passed    1.00 sec
>      Start 67: MdrunTpiTests
>67/87 Test #67: MdrunTpiTests ..................................   Passed    0.60 sec
>      Start 68: MdrunMpiTests
>68/87 Test #68: MdrunMpiTests ..................................   Passed    1.03 sec
>      Start 69: MdrunMultiSimTests
>69/87 Test #69: MdrunMultiSimTests .............................   Passed    0.02 sec
>      Start 70: MdrunMultiSimReplexTests
>70/87 Test #70: MdrunMultiSimReplexTests .......................   Passed    0.02 sec
>      Start 71: MdrunMultiSimReplexEquivalenceTests
>71/87 Test #71: MdrunMultiSimReplexEquivalenceTests ............   Passed    0.02 sec
>      Start 72: MdrunMpi1RankPmeTests
>72/87 Test #72: MdrunMpi1RankPmeTests ..........................   Passed    1.84 sec
>      Start 73: MdrunMpi2RankPmeTests
>73/87 Test #73: MdrunMpi2RankPmeTests ..........................   Passed    2.44 sec
>      Start 74: MdrunMpiCoordinationBasicTestsOneRank
>74/87 Test #74: MdrunMpiCoordinationBasicTestsOneRank ..........   Passed    0.02 sec
>      Start 75: MdrunMpiCoordinationBasicTestsTwoRanks
>75/87 Test #75: MdrunMpiCoordinationBasicTestsTwoRanks .........   Passed    0.02 sec
>      Start 76: MdrunMpiCoordinationCouplingTestsOneRank
>76/87 Test #76: MdrunMpiCoordinationCouplingTestsOneRank .......   Passed    0.02 sec
>      Start 77: MdrunMpiCoordinationCouplingTestsTwoRanks
>77/87 Test #77: MdrunMpiCoordinationCouplingTestsTwoRanks ......   Passed    0.02 sec
>      Start 78: MdrunMpiCoordinationConstraintsTestsOneRank
>78/87 Test #78: MdrunMpiCoordinationConstraintsTestsOneRank ....   Passed    0.02 sec
>      Start 79: MdrunMpiCoordinationConstraintsTestsTwoRanks
>79/87 Test #79: MdrunMpiCoordinationConstraintsTestsTwoRanks ...   Passed    0.02 sec
>      Start 80: MdrunFEPTests
>80/87 Test #80: MdrunFEPTests ..................................   Passed    0.02 sec
>      Start 81: MdrunPullTests
>81/87 Test #81: MdrunPullTests .................................   Passed    1.26 sec
>      Start 82: MdrunSimulatorComparison
>82/87 Test #82: MdrunSimulatorComparison .......................   Passed    0.02 sec
>      Start 83: MdrunVirtualSiteTests
>83/87 Test #83: MdrunVirtualSiteTests ..........................   Passed    0.22 sec
>      Start 84: regressiontests/complex
>84/87 Test #84: regressiontests/complex ........................   Passed   62.94 sec
>      Start 85: regressiontests/freeenergy
>85/87 Test #85: regressiontests/freeenergy .....................***Failed   21.46 sec
>Mdrun cannot use the requested (or automatic) number of ranks, retrying with 8.
>Abnormal return value for ' gmx mdrun        -notunepme >mdrun.out 2>&1' was 1
>Retrying mdrun with better settings...
>Abnormal return value for ' gmx mdrun        -notunepme >mdrun.out 2>&1' was -1
>FAILED. Check mdrun.out, md.log file(s) in transformAtoB for transformAtoB
>1 out of 10 freeenergy tests FAILED
>      Start 86: regressiontests/rotation
>86/87 Test #86: regressiontests/rotation .......................   Passed    4.47 sec
>      Start 87: regressiontests/essentialdynamics
>87/87 Test #87: regressiontests/essentialdynamics ..............   Passed    3.19 sec
>99% tests passed, 1 tests failed out of 87
>Label Time Summary:
>GTest              =  34.40 sec*proc (81 tests)
>IntegrationTest    =  18.73 sec*proc (25 tests)
>MpiTest            =   9.77 sec*proc (19 tests)
>QuickGpuTest       =   7.90 sec*proc (17 tests)
>SlowTest           =  11.50 sec*proc (13 tests)
>UnitTest           =   4.17 sec*proc (43 tests)
>Total Test time (real) = 126.56 sec
>The following tests FAILED:
>	 85 - regressiontests/freeenergy (Failed)
>Errors while running CTest
>gmake[3]: *** [CMakeFiles/run-ctest-nophys.dir/build.make:74: CMakeFiles/run-ctest-nophys] Error 8
>gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>gmake[2]: *** [CMakeFiles/Makefile2:3263: CMakeFiles/run-ctest-nophys.dir/all] Error 2
>gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>gmake[1]: *** [CMakeFiles/Makefile2:3296: CMakeFiles/check.dir/rule] Error 2
>gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build'
>gmake: *** [Makefile:644: check] Error 2
>error: Bad exit status from /var/tmp/rpm-tmp.3ILX2s (%check)
>RPM build errors:
>    Bad exit status from /var/tmp/rpm-tmp.3ILX2s (%check)
>Child return code was: 1
>EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M d38d3639a3514e658d071646e4e0dc61 -D /var/lib/mock/f39-build-44289035-5275284/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.5688dr88:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007" --setenv=PS1=<mock-chroot> \\s-\\v\\$  --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/gromacs.spec\n', 1)]
>Traceback (most recent call last):
>  File "/usr/lib/python3.11/site-packages/mockbuild/trace_decorator.py", line 93, in trace
>    result = func(*args, **kw)
>             ^^^^^^^^^^^^^^^^^
>  File "/usr/lib/python3.11/site-packages/mockbuild/util.py", line 597, in do_with_status
>    raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode)
>mockbuild.exception.Error: Command failed: 
> # /usr/bin/systemd-nspawn -q -M d38d3639a3514e658d071646e4e0dc61 -D /var/lib/mock/f39-build-44289035-5275284/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.5688dr88:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007" --setenv=PS1=<mock-chroot> \s-\v\$  --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/gromacs.spec
>

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Attachments on bug 2225910: 1978162 | 1978163 | 1978164