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Red Hat Bugzilla – Attachment 1979428 Details for
Bug 2226348
python-tables: FTBFS in Fedora rawhide/f39
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build.log
build.log (text/plain), 14.94 KB, created by
Fedora Release Engineering
on 2023-07-25 19:53:26 UTC
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Description:
build.log
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Fedora Release Engineering
Created:
2023-07-25 19:53:26 UTC
Size:
14.94 KB
patch
obsolete
>Mock Version: 4.1 >Mock Version: 4.1 >Mock Version: 4.1 >ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target s390x --nodeps /builddir/build/SPECS/python-tables.spec'], chrootPath='/var/lib/mock/f39-build-44343156-5276730/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3ff7c439750>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4kbnamg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) >Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4kbnamg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] >Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5465763140e14d2cb9cbd96de0b34cd3', '-D', '/var/lib/mock/f39-build-44343156-5276730/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4kbnamg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target s390x --nodeps /builddir/build/SPECS/python-tables.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False >warning: %patchN is deprecated (4 usages found), use %patch N (or %patch -P N) >Building target platforms: s390x >Building for target s390x >setting SOURCE_DATE_EPOCH=1689897600 >Wrote: /builddir/build/SRPMS/python-tables-3.7.0-10.fc39.src.rpm >RPM build warnings: > %patchN is deprecated (4 usages found), use %patch N (or %patch -P N) >Child return code was: 0 >ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target s390x --nodeps /builddir/build/SPECS/python-tables.spec'], chrootPath='/var/lib/mock/f39-build-44343156-5276730/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3ff7c439750>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4kbnamg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) >Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4kbnamg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] >Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ec162bf73b9d44439038dbd69b4967de', '-D', '/var/lib/mock/f39-build-44343156-5276730/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4kbnamg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target s390x --nodeps /builddir/build/SPECS/python-tables.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False >warning: %patchN is deprecated (4 usages found), use %patch N (or %patch -P N) >Building target platforms: s390x >Building for target s390x >setting SOURCE_DATE_EPOCH=1689897600 >Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Q7pXv0 >+ umask 022 >+ cd /builddir/build/BUILD >+ cd /builddir/build/BUILD >+ rm -rf PyTables-3.7.0 >+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-tables-3.7.0.tar.gz >+ STATUS=0 >+ '[' 0 -ne 0 ']' >+ cd PyTables-3.7.0 >+ /usr/bin/mkdir -p SPECPARTS >+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . >+ echo 'Patch #0 (always-use-blosc.diff):' >Patch #0 (always-use-blosc.diff): >+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 >patching file tables/utilsextension.pyx >Hunk #1 succeeded at 272 (offset -4 lines). >+ echo 'Patch #1 (0001-Skip-tests-that-fail-on-s390x.patch):' >Patch #1 (0001-Skip-tests-that-fail-on-s390x.patch): >+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 >patching file tables/tests/test_index_backcompat.py >+ echo 'Patch #2 (0002-Skip-test-that-fails-on-amd64.patch):' >Patch #2 (0002-Skip-test-that-fails-on-amd64.patch): >+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 >patching file tables/tests/test_expression.py >+ echo 'Patch #3 (0003-python3.12-cython-fix-slice-indexing.patch):' >Patch #3 (0003-python3.12-cython-fix-slice-indexing.patch): >+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 >patching file tables/utilsextension.pyx >Hunk #1 succeeded at 831 (offset -68 lines). >+ cp -a /builddir/build/SOURCES/pytablesmanual-3.3.0.pdf pytablesmanual.pdf >+ find c-blosc -mindepth 1 -maxdepth 1 -name hdf5 -prune -o -exec rm -r '{}' + >+ RPM_EC=0 >++ jobs -p >+ exit 0 >Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.6bKaVI >+ umask 022 >+ cd /builddir/build/BUILD >+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' >+ export CFLAGS >+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' >+ export CXXFLAGS >+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' >+ export FFLAGS >+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' >+ export FCFLAGS >+ VALAFLAGS=-g >+ export VALAFLAGS >+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' >+ export RUSTFLAGS >+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' >+ export LDFLAGS >+ LT_SYS_LIBRARY_PATH=/usr/lib64: >+ export LT_SYS_LIBRARY_PATH >+ CC=gcc >+ export CC >+ CXX=g++ >+ export CXX >+ cd PyTables-3.7.0 >+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' >+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' >+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' >/builddir/build/BUILD/PyTables-3.7.0/cpuinfo.py:549: SyntaxWarning: invalid escape sequence '\d' > if re.match('^i\d86$|^x86$|^x86_32$|^i86pc$|^ia32$|^ia-32$|^bepc$', raw_arch_string): >Error compiling Cython file: >------------------------------------------------------------ >... >def _dump_h5_backtrace(): > cdef object bt = [] > if H5Ewalk(H5E_DEFAULT, H5E_WALK_DOWNWARD, e_walk_cb, <void*>bt) < 0: > ^ >------------------------------------------------------------ >tables/utilsextension.pyx:382:47: Cannot assign type 'herr_t (unsigned int, const H5E_error_t *, void *) except? -1 nogil' to 'H5E_walk_t' >cpuinfo failed, assuming no CPU features: py-cpuinfo currently only works on X86 and some PPC and ARM CPUs. >* Using Python 3.12.0b4 (main, Jul 12 2023, 00:00:00) [GCC 13.1.1 20230614 (Red Hat 13.1.1-4)] >* Found cython 3.0.0 >* USE_PKGCONFIG: True >* Found HDF5 headers at ``/usr/include``, library at ``/usr/lib64``. >* Found LZO 2 headers at ``/usr/include``, library at ``/usr/lib64``. >* Skipping detection of LZO 1 since LZO 2 has already been found. >* Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``. >* Found blosc headers at ``/usr/include``, library at ``/usr/lib64``. >Compiling tables/utilsextension.pyx because it changed. >[1/1] Cythonizing tables/utilsextension.pyx >Traceback (most recent call last): > File "/builddir/build/BUILD/PyTables-3.7.0/setup.py", line 834, in <module> > cython_extfiles = get_cython_extfiles(cython_extnames) > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ > File "/builddir/build/BUILD/PyTables-3.7.0/setup.py", line 829, in get_cython_extfiles > cythonize(str(extpfile), language_level="2") > File "/usr/lib64/python3.12/site-packages/Cython/Build/Dependencies.py", line 1134, in cythonize > cythonize_one(*args) > File "/usr/lib64/python3.12/site-packages/Cython/Build/Dependencies.py", line 1301, in cythonize_one > raise CompileError(None, pyx_file) >Cython.Compiler.Errors.CompileError: tables/utilsextension.pyx >error: Bad exit status from /var/tmp/rpm-tmp.6bKaVI (%build) > %patchN is deprecated (4 usages found), use %patch N (or %patch -P N) > Bad exit status from /var/tmp/rpm-tmp.6bKaVI (%build) >RPM build warnings: >RPM build errors: >Child return code was: 1 >EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M ec162bf73b9d44439038dbd69b4967de -D /var/lib/mock/f39-build-44343156-5276730/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.n4kbnamg:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007" --setenv=PS1=<mock-chroot> \\s-\\v\\$ --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target s390x --nodeps /builddir/build/SPECS/python-tables.spec\n', 1)] >Traceback (most recent call last): > File "/usr/lib/python3.11/site-packages/mockbuild/trace_decorator.py", line 93, in trace > result = func(*args, **kw) > ^^^^^^^^^^^^^^^^^ > File "/usr/lib/python3.11/site-packages/mockbuild/util.py", line 597, in do_with_status > raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) >mockbuild.exception.Error: Command failed: > # /usr/bin/systemd-nspawn -q -M ec162bf73b9d44439038dbd69b4967de -D /var/lib/mock/f39-build-44343156-5276730/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.n4kbnamg:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007" --setenv=PS1=<mock-chroot> \s-\v\$ --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -bb --noclean --target s390x --nodeps /builddir/build/SPECS/python-tables.spec >
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