Attachment 1979955 Details for Bug 2226542 – build.log

build.log

build.log (text/plain), 32.00 KB, created by Fedora Release Engineering on 2023-07-25 20:34:45 UTC

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Creator: Fedora Release Engineering

Created: 2023-07-25 20:34:45 UTC

Size: 32.00 KB

patch

obsolete

>tsmodels.py::test_missing_value_fill PASSED  [ 60%]
>bids/modeling/tests/test_transformations.py::test_convolve_multi PASSED  [ 60%]
>bids/modeling/tests/test_transformations.py::test_convolve PASSED        [ 60%]
>bids/modeling/tests/test_transformations.py::test_convolve_oversampling PASSED [ 61%]
>bids/modeling/tests/test_transformations.py::test_convolve_impulse PASSED [ 61%]
>bids/modeling/tests/test_transformations.py::test_rename PASSED          [ 61%]
>bids/modeling/tests/test_transformations.py::test_product PASSED         [ 61%]
>bids/modeling/tests/test_transformations.py::test_sum PASSED             [ 62%]
>bids/modeling/tests/test_transformations.py::test_scale PASSED           [ 62%]
>bids/modeling/tests/test_transformations.py::test_demean PASSED          [ 62%]
>bids/modeling/tests/test_transformations.py::test_orthogonalize_dense PASSED [ 62%]
>bids/modeling/tests/test_transformations.py::test_orthogonalize_sparse PASSED [ 63%]
>bids/modeling/tests/test_transformations.py::test_split PASSED           [ 63%]
>bids/modeling/tests/test_transformations.py::test_resample_dense PASSED  [ 63%]
>bids/modeling/tests/test_transformations.py::test_threshold PASSED       [ 63%]
>bids/modeling/tests/test_transformations.py::test_assign PASSED          [ 64%]
>bids/modeling/tests/test_transformations.py::test_assign_multiple PASSED [ 64%]
>bids/modeling/tests/test_transformations.py::test_copy PASSED            [ 64%]
>bids/modeling/tests/test_transformations.py::test_expand_variable_names PASSED [ 64%]
>bids/modeling/tests/test_transformations.py::test_factor PASSED          [ 65%]
>bids/modeling/tests/test_transformations.py::test_filter PASSED          [ 65%]
>bids/modeling/tests/test_transformations.py::test_replace PASSED         [ 65%]
>bids/modeling/tests/test_transformations.py::test_select PASSED          [ 65%]
>bids/modeling/tests/test_transformations.py::test_delete PASSED          [ 66%]
>bids/modeling/tests/test_transformations.py::test_and PASSED             [ 66%]
>bids/modeling/tests/test_transformations.py::test_or PASSED              [ 66%]
>bids/modeling/tests/test_transformations.py::test_not PASSED             [ 66%]
>bids/modeling/tests/test_transformations.py::test_dropna PASSED          [ 67%]
>bids/modeling/tests/test_transformations.py::test_group PASSED           [ 67%]
>bids/modeling/tests/test_transformations.py::test_resample PASSED        [ 67%]
>bids/modeling/tests/test_transformations.py::test_Lag PASSED             [ 67%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP-MAG prepared-EP-echo planar (EP)] PASSED [ 68%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP-MAG prepared-GR-gradient recalled (GR)] PASSED [ 68%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP-MAG prepared-IR-inversion recovery (IR)] PASSED [ 68%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP-MAG prepared-RM-research mode (RM)] PASSED [ 68%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP-MAG prepared-SE-spin echo (SE)] PASSED [ 69%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP-MAG prepared-SE_EP-spin echo and echo planar (SE/EP)] PASSED [ 69%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MTC-magnetization transfer contrast-EP-echo planar (EP)] PASSED [ 69%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MTC-magnetization transfer contrast-GR-gradient recalled (GR)] PASSED [ 69%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MTC-magnetization transfer contrast-IR-inversion recovery (IR)] PASSED [ 70%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MTC-magnetization transfer contrast-RM-research mode (RM)] PASSED [ 70%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MTC-magnetization transfer contrast-SE-spin echo (SE)] PASSED [ 70%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MTC-magnetization transfer contrast-SE_EP-spin echo and echo planar (SE/EP)] PASSED [ 70%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[NONE-no sequence variant-EP-echo planar (EP)] PASSED [ 71%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[NONE-no sequence variant-GR-gradient recalled (GR)] PASSED [ 71%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[NONE-no sequence variant-IR-inversion recovery (IR)] PASSED [ 71%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[NONE-no sequence variant-RM-research mode (RM)] PASSED [ 71%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[NONE-no sequence variant-SE-spin echo (SE)] PASSED [ 72%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[NONE-no sequence variant-SE_EP-spin echo and echo planar (SE/EP)] PASSED [ 72%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[OSP-oversampling phase-EP-echo planar (EP)] PASSED [ 72%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[OSP-oversampling phase-GR-gradient recalled (GR)] PASSED [ 72%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[OSP-oversampling phase-IR-inversion recovery (IR)] PASSED [ 73%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[OSP-oversampling phase-RM-research mode (RM)] PASSED [ 73%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[OSP-oversampling phase-SE-spin echo (SE)] PASSED [ 73%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[OSP-oversampling phase-SE_EP-spin echo and echo planar (SE/EP)] PASSED [ 73%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SK-segmented k-space-EP-echo planar (EP)] PASSED [ 74%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SK-segmented k-space-GR-gradient recalled (GR)] PASSED [ 74%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SK-segmented k-space-IR-inversion recovery (IR)] PASSED [ 74%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SK-segmented k-space-RM-research mode (RM)] PASSED [ 74%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SK-segmented k-space-SE-spin echo (SE)] PASSED [ 75%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SK-segmented k-space-SE_EP-spin echo and echo planar (SE/EP)] PASSED [ 75%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SS-steady state-EP-echo planar (EP)] PASSED [ 75%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SS-steady state-GR-gradient recalled (GR)] PASSED [ 75%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SS-steady state-IR-inversion recovery (IR)] PASSED [ 76%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SS-steady state-RM-research mode (RM)] PASSED [ 76%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SS-steady state-SE-spin echo (SE)] PASSED [ 76%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[SS-steady state-SE_EP-spin echo and echo planar (SE/EP)] PASSED [ 76%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[TRSS-time reversed steady state-EP-echo planar (EP)] PASSED [ 77%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[TRSS-time reversed steady state-GR-gradient recalled (GR)] PASSED [ 77%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[TRSS-time reversed steady state-IR-inversion recovery (IR)] PASSED [ 77%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[TRSS-time reversed steady state-RM-research mode (RM)] PASSED [ 77%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[TRSS-time reversed steady state-SE-spin echo (SE)] PASSED [ 78%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[TRSS-time reversed steady state-SE_EP-spin echo and echo planar (SE/EP)] PASSED [ 78%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP_SS-MAG prepared and steady state-EP-echo planar (EP)] PASSED [ 78%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP_SS-MAG prepared and steady state-GR-gradient recalled (GR)] PASSED [ 78%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP_SS-MAG prepared and steady state-IR-inversion recovery (IR)] PASSED [ 79%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP_SS-MAG prepared and steady state-RM-research mode (RM)] PASSED [ 79%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP_SS-MAG prepared and steady state-SE-spin echo (SE)] PASSED [ 79%]
>bids/reports/tests/test_parameters.py::test_describe_sequence[MP_SS-MAG prepared and steady state-SE_EP-spin echo and echo planar (SE/EP)] PASSED [ 79%]
>bids/reports/tests/test_parameters.py::test_describe_pe_direction[i-left to right] PASSED [ 80%]
>bids/reports/tests/test_parameters.py::test_describe_pe_direction[i--right to left] PASSED [ 80%]
>bids/reports/tests/test_parameters.py::test_describe_pe_direction[j-posterior to anterior] PASSED [ 80%]
>bids/reports/tests/test_parameters.py::test_describe_pe_direction[j--anterior to posterior] PASSED [ 80%]
>bids/reports/tests/test_parameters.py::test_describe_pe_direction[k-inferior to superior] PASSED [ 80%]
>bids/reports/tests/test_parameters.py::test_describe_pe_direction[k--superior to inferior] PASSED [ 81%]
>bids/reports/tests/test_parameters.py::test_describe_bvals_smoke PASSED  [ 81%]
>bids/reports/tests/test_parameters.py::test_describe_echo_times_smoke PASSED [ 81%]
>bids/reports/tests/test_parameters.py::test_describe_echo_times_fmap PASSED [ 81%]
>bids/reports/tests/test_parameters.py::test_describe_repetition_time_smoke PASSED [ 82%]
>bids/reports/tests/test_parameters.py::test_describe_func_duration_smoke PASSED [ 82%]
>bids/reports/tests/test_parameters.py::test_describe_multiband_factor_smoke PASSED [ 82%]
>bids/reports/tests/test_parameters.py::test_describe_inplane_accel_smoke PASSED [ 82%]
>bids/reports/tests/test_parameters.py::test_describe_flip_angle_smoke PASSED [ 83%]
>bids/reports/tests/test_parameters.py::test_get_slice_info[slice_times0-sequential ascending] PASSED [ 83%]
>bids/reports/tests/test_parameters.py::test_get_slice_info[slice_times1-sequential descending] PASSED [ 83%]
>bids/reports/tests/test_parameters.py::test_get_slice_info[slice_times2-interleaved ascending] PASSED [ 83%]
>bids/reports/tests/test_parameters.py::test_get_slice_info[slice_times3-interleaved descending] PASSED [ 84%]
>bids/reports/tests/test_parameters.py::test_describe_slice_timing PASSED [ 84%]
>bids/reports/tests/test_parameters.py::test_get_size_str PASSED          [ 84%]
>bids/reports/tests/test_parameters.py::test_describe_image_size PASSED   [ 84%]
>bids/reports/tests/test_parameters.py::test_describe_dmri_directions PASSED [ 85%]
>bids/reports/tests/test_parameters.py::test_describe_intendedfor_targets PASSED [ 85%]
>bids/reports/tests/test_parsing.py::test_anat_info_smoke PASSED          [ 85%]
>bids/reports/tests/test_parsing.py::test_dwi_info_smoke PASSED           [ 85%]
>bids/reports/tests/test_parsing.py::test_fmap_info_smoke PASSED          [ 86%]
>bids/reports/tests/test_parsing.py::test_func_info_smoke PASSED          [ 86%]
>bids/reports/tests/test_parsing.py::test_general_acquisition_info_smoke PASSED [ 86%]
>bids/reports/tests/test_parsing.py::test_final_paragraph_smoke PASSED    [ 86%]
>bids/reports/tests/test_parsing.py::test_parse_files_smoke PASSED        [ 87%]
>bids/reports/tests/test_report.py::test_report_init PASSED               [ 87%]
>bids/reports/tests/test_report.py::test_report_gen PASSED                [ 87%]
>bids/reports/tests/test_report.py::test_report_gen_from_files PASSED     [ 87%]
>bids/reports/tests/test_report.py::test_report_subject PASSED            [ 88%]
>bids/reports/tests/test_report.py::test_report_session PASSED            [ 88%]
>bids/reports/tests/test_report.py::test_report_file_config PASSED        [ 88%]
>bids/reports/tests/test_report.py::test_report_dict_config PASSED        [ 88%]
>bids/tests/test_cli.py::test_cli_entrypoint PASSED                       [ 89%]
>bids/tests/test_cli.py::test_validate_multiple PASSED                    [ 89%]
>bids/tests/test_cli.py::test_layout PASSED                               [ 89%]
>bids/tests/test_config.py::test_load_from_standard_paths PASSED          [ 89%]
>bids/tests/test_config.py::test_set_option PASSED                        [ 90%]
>bids/tests/test_config.py::test_extension_initial_dot PASSED             [ 90%]
>bids/variables/tests/test_collections.py::test_run_variable_collection_init PASSED [ 90%]
>bids/variables/tests/test_collections.py::test_run_variable_collection_sparse_variable_accessors PASSED [ 90%]
>bids/variables/tests/test_collections.py::test_run_variable_collection_dense_variable_accessors PASSED [ 91%]
>bids/variables/tests/test_collections.py::test_run_variable_collection_get_sampling_rate PASSED [ 91%]
>bids/variables/tests/test_collections.py::test_resample_run_variable_collection PASSED [ 91%]
>bids/variables/tests/test_collections.py::test_run_variable_collection_to_df_all_sparse_vars PASSED [ 91%]
>bids/variables/tests/test_collections.py::test_run_variable_collection_to_df_all_dense_vars PASSED [ 92%]
>bids/variables/tests/test_collections.py::test_run_variable_collection_bad_length_to_df_all_dense_vars FAILED [ 92%]
>bids/variables/tests/test_collections.py::test_run_variable_collection_to_df_mixed_vars PASSED [ 92%]
>bids/variables/tests/test_collections.py::test_merge_collections PASSED  [ 92%]
>bids/variables/tests/test_collections.py::test_get_collection_entities PASSED [ 93%]
>bids/variables/tests/test_collections.py::test_match_variables PASSED    [ 93%]
>bids/variables/tests/test_collections.py::test_n_variables PASSED        [ 93%]
>bids/variables/tests/test_entities.py::test_run PASSED                   [ 93%]
>bids/variables/tests/test_entities.py::test_get_or_create_node PASSED    [ 94%]
>bids/variables/tests/test_entities.py::test_get_nodes PASSED             [ 94%]
>bids/variables/tests/test_entities.py::test_get_collections_merged PASSED [ 94%]
>bids/variables/tests/test_entities.py::test_get_collections_unmerged PASSED [ 94%]
>bids/variables/tests/test_io.py::test_load_events PASSED                 [ 95%]
>bids/variables/tests/test_io.py::test_load_participants PASSED           [ 95%]
>bids/variables/tests/test_io.py::test_load_synthetic_dataset[events] PASSED [ 95%]
>bids/variables/tests/test_io.py::test_load_synthetic_dataset[preproc] PASSED [ 95%]
>bids/variables/tests/test_variables.py::test_dense_event_variable_init PASSED [ 96%]
>bids/variables/tests/test_variables.py::test_dense_event_variable_resample PASSED [ 96%]
>bids/variables/tests/test_variables.py::test_merge_wrapper PASSED        [ 96%]
>bids/variables/tests/test_variables.py::test_sparse_run_variable_to_dense PASSED [ 96%]
>bids/variables/tests/test_variables.py::test_sparse_run_variable_to_dense_default_sr PASSED [ 97%]
>bids/variables/tests/test_variables.py::test_merge_densified_variables PASSED [ 97%]
>bids/variables/tests/test_variables.py::test_densify_merged_variables PASSED [ 97%]
>bids/variables/tests/test_variables.py::test_merge_simple_variables PASSED [ 97%]
>bids/variables/tests/test_variables.py::test_merge_sparse_run_variables PASSED [ 98%]
>bids/variables/tests/test_variables.py::test_merge_dense_run_variables PASSED [ 98%]
>bids/variables/tests/test_variables.py::test_simple_variable_to_df PASSED [ 98%]
>bids/variables/tests/test_variables.py::test_sparse_run_variable_to_df PASSED [ 98%]
>bids/variables/tests/test_variables.py::test_dense_run_variable_to_df PASSED [ 99%]
>bids/variables/tests/test_variables.py::test_filter_simple_variable PASSED [ 99%]
>bids/variables/tests/test_variables.py::test_resampling_edge_case[2.0-251] PASSED [ 99%]
>bids/variables/tests/test_variables.py::test_resampling_edge_case[2.000001-251] PASSED [ 99%]
>bids/variables/tests/test_variables.py::test_downsampling PASSED         [100%]
>=================================== FAILURES ===================================
>_________ test_run_variable_collection_bad_length_to_df_all_dense_vars _________
>run_coll_bad_length = <BIDSRunVariableCollection['PTval', 'RT', 'gain', 'loss', 'parametric gain', 'respcat', 'respnum', 'trial_type']>
>    def test_run_variable_collection_bad_length_to_df_all_dense_vars(run_coll_bad_length):
>    
>        timing_cols = {'onset', 'duration'}
>        entity_cols = {'subject', 'run', 'task',  'suffix', 'datatype'}
>        cond_names = {'PTval', 'RT', 'gain', 'loss', 'parametric gain', 'respcat',
>                      'respnum', 'trial_type'}
>        md_names = {'TaskName', 'RepetitionTime', 'extension', 'SliceTiming'}
>        condition = {'condition'}
>        ampl = {'amplitude'}
>    
>        unif_coll = run_coll_bad_length.to_dense(sampling_rate=10)
>    
>>       df = unif_coll.to_df()
>bids/variables/tests/test_collections.py:238: 
>_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
>bids/variables/collections.py:625: in to_df
>    return super().to_df(
>bids/variables/collections.py:152: in to_df
>    dfs = [v.to_df(True, True, timing=True) for v in variables]
>bids/variables/variables.py:618: in to_df
>    df['onset'] = self.timestamps.values.astype(float) / 1e+9
>/usr/lib64/python3.12/site-packages/pandas/core/frame.py:3980: in __setitem__
>    self._set_item(key, value)
>/usr/lib64/python3.12/site-packages/pandas/core/frame.py:4174: in _set_item
>    value = self._sanitize_column(value)
>/usr/lib64/python3.12/site-packages/pandas/core/frame.py:4915: in _sanitize_column
>    com.require_length_match(value, self.index)
>_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
>data = array([0.0000e+00, 1.0000e-01, 2.0000e-01, ..., 4.3206e+03, 4.3207e+03,
>       4.3208e+03])
>index = RangeIndex(start=0, stop=43210, step=1)
>    def require_length_match(data, index: Index) -> None:
>        """
>        Check the length of data matches the length of the index.
>        """
>        if len(data) != len(index):
>>           raise ValueError(
>                "Length of values "
>                f"({len(data)}) "
>                "does not match length of index "
>                f"({len(index)})"
>            )
>E           ValueError: Length of values (43209) does not match length of index (43210)
>/usr/lib64/python3.12/site-packages/pandas/core/common.py:571: ValueError
>=============================== warnings summary ===============================
>../../../../usr/lib/python3.12/site-packages/pytz/tzinfo.py:27
>  /usr/lib/python3.12/site-packages/pytz/tzinfo.py:27: DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.fromtimestamp(timestamp, datetime.UTC).
>    _epoch = datetime.utcfromtimestamp(0)
>../../../../usr/lib/python3.12/site-packages/astor/op_util.py:92
>  /usr/lib/python3.12/site-packages/astor/op_util.py:92: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
>    precedence_data = dict((getattr(ast, x, None), z) for x, y, z in op_data)
>../../../../usr/lib/python3.12/site-packages/pkg_resources/__init__.py:121
>  /usr/lib/python3.12/site-packages/pkg_resources/__init__.py:121: DeprecationWarning: pkg_resources is deprecated as an API
>    warnings.warn("pkg_resources is deprecated as an API", DeprecationWarning)
>bids/layout/tests/test_layout.py: 14 warnings
>bids/layout/tests/test_models.py: 2 warnings
>bids/modeling/tests/test_statsmodels.py: 1 warning
>bids/variables/tests/test_io.py: 1 warning
>  /builddir/build/BUILD/pybids-0.16.1/bids/layout/validation.py:122: UserWarning: The PipelineDescription field was superseded by GeneratedBy in BIDS 1.4.0. You can use ``pybids upgrade`` to update your derivative dataset.
>    warnings.warn("The PipelineDescription field was superseded "
>bids/layout/tests/test_layout.py::test_get_return_type_dir
>  /builddir/build/BUILD/pybids-0.16.1/bids/layout/validation.py:39: UserWarning: The absolute_paths argument will be removed from PyBIDS in 0.14. You can easily access the relative path of BIDSFile objects via the .relpath attribute (instead of .path). Switching to this pattern is strongly encouraged, as the current implementation of relative path handling is known to produce query failures in certain edge cases.
>    warnings.warn("The absolute_paths argument will be removed from PyBIDS "
>bids/layout/tests/test_models.py::test_load_existing_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/layout/tests/test_models.py:185: SAWarning: New instance <Config at 0x7f7f28261790> with identity key (<class 'bids.layout.models.Config'>, ('dummy',), None) conflicts with persistent instance <Config at 0x7f7f274cc7a0>
>    session.commit()
>bids/layout/tests/test_writing.py::TestWritableFile::test_build_path
>  /builddir/build/BUILD/pybids-0.16.1/bids/layout/writing.py:159: UserWarning: Pattern "{session<A|B|C>|D}" is inconsistent as it defines an invalid default value.
>    warnings.warn(
>bids/modeling/tests/test_automodel.py: 6 warnings
>bids/modeling/tests/test_statsmodels.py: 1811 warnings
>bids/variables/tests/test_collections.py: 1758 warnings
>bids/variables/tests/test_io.py: 1570 warnings
>bids/variables/tests/test_variables.py: 108 warnings
>  /builddir/build/BUILD/pybids-0.16.1/bids/variables/variables.py:533: DeprecationWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)`
>    df.iloc[prev_ix:prev_ix + reps, col_ix] = v
>bids/modeling/tests/test_statsmodels.py: 11 warnings
>  /builddir/build/BUILD/pybids-0.16.1/bids/modeling/statsmodels.py:63: UserWarning: [Node run]:Transformations reformatted to {'transformer': 'pybids-transforms-v1', 'instructions': [{'name': 'Factor', 'input': 'trial_type'}, {'name': 'Rename', 'input': 'trial_type.parametric gain', 'output': 'gain'}]}
>    warnings.warn(f"[Node {node['name']}]:"
>bids/modeling/tests/test_statsmodels.py: 21 warnings
>  /usr/lib/python3.12/site-packages/formulaic/materializers/pandas.py:119: DeprecationWarning: The __array_wrap__ method of DataFrame and Series will be removed in a future version
>    ":".join(solo_factors): functools.reduce(
>bids/modeling/tests/test_transformations.py::test_convolve_impulse
>  /builddir/build/BUILD/pybids-0.16.1/bids/variables/variables.py:425: UserWarning: The onset time of a variable seems to exceed the runs duration, hence runs are incremented by one internally.
>    warnings.warn("The onset time of a variable seems to exceed "
>bids/modeling/tests/test_transformations.py::test_orthogonalize_dense
>  /builddir/build/BUILD/pybids-0.16.1/bids/modeling/transformations/base.py:374: UserWarning: Found a mix of dense and sparse variables. May cause problems for some transformations.
>    warnings.warn(msg)
>bids/modeling/tests/test_transformations.py::test_threshold
>  /builddir/build/BUILD/pybids-0.16.1/bids/variables/collections.py:264: UserWarning: The provided key to use in the collection ('pg') does not match the passed Column object's existing name ('parametric gain'). The Column name will be set to match the provided key.
>    warnings.warn(
>bids/modeling/tests/test_transformations.py::test_filter
>  /builddir/build/BUILD/pybids-0.16.1/bids/modeling/transformations/base.py:393: UserWarning: Forcing all sparse variables to dense in order to ensure proper alignment.
>    warnings.warn(msg)
>bids/modeling/tests/test_transformations.py::test_or
>  /builddir/build/BUILD/pybids-0.16.1/bids/variables/collections.py:264: UserWarning: The provided key to use in the collection ('copy') does not match the passed Column object's existing name ('respnum.0'). The Column name will be set to match the provided key.
>    warnings.warn(
>bids/reports/tests/test_parameters.py::test_describe_intendedfor_targets
>bids/reports/tests/test_parsing.py::test_fmap_info_smoke
>bids/reports/tests/test_parsing.py::test_parse_files_smoke
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_subject
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/layout/models.py:229: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['run'] instead of .run.
>    warnings.warn("Accessing entities as attributes is deprecated as "
>bids/reports/tests/test_parsing.py::test_parse_files_smoke
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_subject
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-01_ses-01_magnitude1.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/reports/tests/test_parsing.py::test_parse_files_smoke
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_subject
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-01_ses-01_magnitude2.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-02_ses-01_magnitude1.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-02_ses-01_magnitude2.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-03_ses-01_magnitude1.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-03_ses-01_magnitude2.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-04_ses-01_magnitude1.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-04_ses-01_magnitude2.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-05_ses-01_magnitude1.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/reports/tests/test_report.py::test_report_gen
>bids/reports/tests/test_report.py::test_report_gen_from_files
>bids/reports/tests/test_report.py::test_report_session
>bids/reports/tests/test_report.py::test_report_file_config
>bids/reports/tests/test_report.py::test_report_dict_config
>  /builddir/build/BUILD/pybids-0.16.1/bids/reports/parsing.py:386: UserWarning: sub-05_ses-01_magnitude2.nii.gz not yet supported.
>    warnings.warn(group[0].filename + " not yet supported.")
>bids/tests/test_config.py::test_extension_initial_dot
>  /usr/lib/python3.12/site-packages/_pytest/python.py:194: PytestRemovedIn8Warning: Passing None has been deprecated.
>  See https://docs.pytest.org/en/latest/how-to/capture-warnings.html#additional-use-cases-of-warnings-in-tests for alternatives in common use cases.
>    result = testfunction(**testargs)
>-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
>=========================== short test summary info ============================
>FAILED bids/variables/tests/test_collections.py::test_run_variable_collection_bad_length_to_df_all_dense_vars
>===== 1 failed, 340 passed, 64 skipped, 5378 warnings in 365.96s (0:06:05) =====
>error: Bad exit status from /var/tmp/rpm-tmp.rdIqJa (%check)
>    Bad exit status from /var/tmp/rpm-tmp.rdIqJa (%check)
>RPM build errors:
>Child return code was: 1
>EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M fdd7de6d389345f38082c6d2e5fb20e3 -D /var/lib/mock/f39-build-44451019-5281667/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.cm46pn_4:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007" --setenv=PS1=<mock-chroot> \\s-\\v\\$  --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-pybids.spec\n', 1)]
>Traceback (most recent call last):
>  File "/usr/lib/python3.11/site-packages/mockbuild/trace_decorator.py", line 93, in trace
>    result = func(*args, **kw)
>             ^^^^^^^^^^^^^^^^^
>  File "/usr/lib/python3.11/site-packages/mockbuild/util.py", line 597, in do_with_status
>    raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode)
>mockbuild.exception.Error: Command failed: 
> # /usr/bin/systemd-nspawn -q -M fdd7de6d389345f38082c6d2e5fb20e3 -D /var/lib/mock/f39-build-44451019-5281667/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.cm46pn_4:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin --setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007" --setenv=PS1=<mock-chroot> \s-\v\$  --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c /usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-pybids.spec
>

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Attachments on bug 2226542: 1979955 | 1979956