Attachment 306109 Details for Bug 447531 – gdb log of xdrawchem on F-9

gdb log of xdrawchem on F-9

xdrawchem-debug.log (text/plain), 14.93 KB, created by Mamoru TASAKA on 2008-05-20 12:08:59 UTC

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Creator: Mamoru TASAKA

Created: 2008-05-20 12:08:59 UTC

Size: 14.93 KB

patch

obsolete

>Script started on Tue May 20 20:41:10 2008
>]0;tasaka1@localhost:~/rpmbuild/TEMP[?1034h[tasaka1@localhost TEMP]$ LANG=C
>]0;tasaka1@localhost:~/rpmbuild/TEMP[tasaka1@localhost TEMP]$ rpm -q xdrawchem openbabel
>xdrawchem-1.9.9-9.fc9.i386
>openbabel-2.2.0-0.3.b4.fc10.i386
>]0;tasaka1@localhost:~/rpmbuild/TEMP[tasaka1@localhost TEMP]$ rm -f core.*
>]0;tasaka1@localhost:~/rpmbuild/TEMP[tasaka1@localhost TEMP]$ xdrawchem
>Session management error: Could not open network socket
>Segmentation fault (core dumped)
>]0;tasaka1@localhost:~/rpmbuild/TEMP[tasaka1@localhost TEMP]$ ls -al core.*
>-rw------- 1 tasaka1 tasaka1 2310144 May 20 20:41 [0m[00mcore.29893[0m
>[m]0;tasaka1@localhost:~/rpmbuild/TEMP[tasaka1@localhost TEMP]$ gdb xdrawchem core.*
>[?1034hGNU gdb Fedora (6.8-5.fc10)
>Copyright (C) 2008 Free Software Foundation, Inc.
>License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
>This is free software: you are free to change and redistribute it.
>There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
>and "show warranty" for details.
>This GDB was configured as "i386-redhat-linux-gnu"...
>
>warning: Can't read pathname for load map: Input/output error.
>Reading symbols from /usr/lib/libXft.so.2...done.
>Loaded symbols for /usr/lib/libXft.so.2
>Reading symbols from /usr/lib/libopenbabel.so.2...done.
>Loaded symbols for /usr/lib/libopenbabel.so.2
>Reading symbols from /usr/lib/qt-3.3/lib/libqt-mt.so.3...done.
>Loaded symbols for /usr/lib/qt-3.3/lib/libqt-mt.so.3
>Reading symbols from /usr/lib/libXext.so.6.4.0...Reading symbols from /usr/lib/debug/usr/lib/libXext.so.6.4.0.debug...done.
>done.
>Loaded symbols for /usr/lib/libXext.so.6.4.0
>Reading symbols from /usr/lib/libX11.so.6.2.0...Reading symbols from /usr/lib/debug/usr/lib/libX11.so.6.2.0.debug...done.
>done.
>Loaded symbols for /usr/lib/libX11.so.6.2.0
>Reading symbols from /usr/lib/libSM.so.6...done.
>Loaded symbols for /usr/lib/libSM.so.6
>Reading symbols from /usr/lib/libICE.so.6...done.
>Loaded symbols for /usr/lib/libICE.so.6
>Reading symbols from /lib/libdl-2.8.90.so...Reading symbols from /usr/lib/debug/lib/libdl-2.8.90.so.debug...done.
>done.
>Loaded symbols for /lib/libdl-2.8.90.so
>Reading symbols from /usr/lib/libjpeg.so.62...done.
>Loaded symbols for /usr/lib/libjpeg.so.62
>Reading symbols from /usr/lib/libstdc++.so.6...done.
>Loaded symbols for /usr/lib/libstdc++.so.6
>Reading symbols from /lib/libm-2.8.90.so...Reading symbols from /usr/lib/debug/lib/libm-2.8.90.so.debug...done.
>done.
>Loaded symbols for /lib/libm-2.8.90.so
>Reading symbols from /lib/libgcc_s.so.1...done.
>Loaded symbols for /lib/libgcc_s.so.1
>Reading symbols from /lib/libc-2.8.90.so...Reading symbols from /usr/lib/debug/lib/libc-2.8.90.so.debug...done.
>done.
>Loaded symbols for /lib/libc-2.8.90.so
>Reading symbols from /lib/libpthread-2.8.90.so...Reading symbols from /usr/lib/debug/lib/libpthread-2.8.90.so.debug...done.
>done.
>Loaded symbols for /lib/libpthread-2.8.90.so
>Reading symbols from /usr/lib/libfontconfig.so.1.3.0...Reading symbols from /usr/lib/debug/usr/lib/libfontconfig.so.1.3.0.debug...done.
>done.
>Loaded symbols for /usr/lib/libfontconfig.so.1.3.0
>Reading symbols from /usr/lib/libfreetype.so.6...done.
>Loaded symbols for /usr/lib/libfreetype.so.6
>Reading symbols from /usr/lib/libXrender.so.1...done.
>Loaded symbols for /usr/lib/libXrender.so.1
>Reading symbols from /lib/libz.so.1.2.3...Reading symbols from /usr/lib/debug/lib/libz.so.1.2.3.debug...done.
>done.
>Loaded symbols for /lib/libz.so.1.2.3
>Reading symbols from /usr/lib/libmng.so.1...done.
>Loaded symbols for /usr/lib/libmng.so.1
>Reading symbols from /usr/lib/libpng12.so.0.24.0...Reading symbols from /usr/lib/debug/usr/lib/libpng12.so.0.24.0.debug...done.
>done.
>Loaded symbols for /usr/lib/libpng12.so.0.24.0
>Reading symbols from /usr/lib/libXi.so.6...done.
>Loaded symbols for /usr/lib/libXi.so.6
>Reading symbols from /usr/lib/libXrandr.so.2...done.
>Loaded symbols for /usr/lib/libXrandr.so.2
>Reading symbols from /usr/lib/libXcursor.so.1...done.
>Loaded symbols for /usr/lib/libXcursor.so.1
>Reading symbols from /usr/lib/libXinerama.so.1...done.
>Loaded symbols for /usr/lib/libXinerama.so.1
>Reading symbols from /usr/lib/libXau.so.6...done.
>Loaded symbols for /usr/lib/libXau.so.6
>Reading symbols from /usr/lib/libxcb-xlib.so.0.0.0...Reading symbols from /usr/lib/debug/usr/lib/libxcb-xlib.so.0.0.0.debug...done.
>done.
>Loaded symbols for /usr/lib/libxcb-xlib.so.0.0.0
>Reading symbols from /usr/lib/libxcb.so.1.0.0...Reading symbols from /usr/lib/debug/usr/lib/libxcb.so.1.0.0.debug...done.
>done.
>Loaded symbols for /usr/lib/libxcb.so.1.0.0
>Reading symbols from /lib/ld-2.8.90.so...Reading symbols from /usr/lib/debug/lib/ld-2.8.90.so.debug...done.
>done.
>Loaded symbols for /lib/ld-2.8.90.so
>Reading symbols from /lib/libexpat.so.1...done.
>Loaded symbols for /lib/libexpat.so.1
>Reading symbols from /usr/lib/liblcms.so.1...done.
>Loaded symbols for /usr/lib/liblcms.so.1
>Reading symbols from /usr/lib/libXfixes.so.3...done.
>Loaded symbols for /usr/lib/libXfixes.so.3
>Reading symbols from /usr/lib/libXdmcp.so.6...done.
>Loaded symbols for /usr/lib/libXdmcp.so.6
>Reading symbols from /usr/lib/kde3/plugins/styles/plastik.so...done.
>Loaded symbols for /usr/lib/kde3/plugins/styles/plastik.so
>Reading symbols from /usr/lib/libkdefx.so.4...done.
>Loaded symbols for /usr/lib/libkdefx.so.4
>Reading symbols from /usr/lib/openbabel/hinformat.so...done.
>Loaded symbols for /usr/lib/openbabel/hinformat.so
>Reading symbols from /usr/lib/openbabel/gamessformat.so...done.
>Loaded symbols for /usr/lib/openbabel/gamessformat.so
>Reading symbols from /usr/lib/openbabel/povrayformat.so...done.
>Loaded symbols for /usr/lib/openbabel/povrayformat.so
>Reading symbols from /usr/lib/openbabel/chemtoolformat.so...done.
>Loaded symbols for /usr/lib/openbabel/chemtoolformat.so
>Reading symbols from /usr/lib/openbabel/rxnformat.so...done.
>Loaded symbols for /usr/lib/openbabel/rxnformat.so
>Reading symbols from /usr/lib/openbabel/bgfformat.so...done.
>Loaded symbols for /usr/lib/openbabel/bgfformat.so
>Reading symbols from /usr/lib/openbabel/balstformat.so...done.
>Loaded symbols for /usr/lib/openbabel/balstformat.so
>Reading symbols from /usr/lib/openbabel/PQSformat.so...done.
>Loaded symbols for /usr/lib/openbabel/PQSformat.so
>Reading symbols from /usr/lib/openbabel/chemdrawcdxformat.so...done.
>Loaded symbols for /usr/lib/openbabel/chemdrawcdxformat.so
>Reading symbols from /usr/lib/openbabel/reportformat.so...done.
>Loaded symbols for /usr/lib/openbabel/reportformat.so
>Reading symbols from /usr/lib/openbabel/cansmilesformat.so...done.
>Loaded symbols for /usr/lib/openbabel/cansmilesformat.so
>Reading symbols from /usr/lib/openbabel/pcmodelformat.so...done.
>Loaded symbols for /usr/lib/openbabel/pcmodelformat.so
>Reading symbols from /usr/lib/openbabel/tinkerformat.so...done.
>Loaded symbols for /usr/lib/openbabel/tinkerformat.so
>Reading symbols from /usr/lib/openbabel/acrformat.so...done.
>Loaded symbols for /usr/lib/openbabel/acrformat.so
>Reading symbols from /usr/lib/openbabel/mmcifformat.so...done.
>Loaded symbols for /usr/lib/openbabel/mmcifformat.so
>Reading symbols from /usr/lib/openbabel/cccformat.so...done.
>Loaded symbols for /usr/lib/openbabel/cccformat.so
>Reading symbols from /usr/lib/openbabel/xmlformat.so...done.
>Loaded symbols for /usr/lib/openbabel/xmlformat.so
>Reading symbols from /usr/lib/libxml2.so.2...done.
>Loaded symbols for /usr/lib/libxml2.so.2
>Reading symbols from /usr/lib/openbabel/boxformat.so...done.
>Loaded symbols for /usr/lib/openbabel/boxformat.so
>Reading symbols from /usr/lib/openbabel/freefracformat.so...done.
>Loaded symbols for /usr/lib/openbabel/freefracformat.so
>Reading symbols from /usr/lib/openbabel/fastaformat.so...done.
>Loaded symbols for /usr/lib/openbabel/fastaformat.so
>Reading symbols from /usr/lib/openbabel/xedformat.so...done.
>Loaded symbols for /usr/lib/openbabel/xedformat.so
>Reading symbols from /usr/lib/openbabel/chem3dformat.so...done.
>Loaded symbols for /usr/lib/openbabel/chem3dformat.so
>Reading symbols from /usr/lib/openbabel/cssrformat.so...done.
>Loaded symbols for /usr/lib/openbabel/cssrformat.so
>Reading symbols from /usr/lib/openbabel/mmodformat.so...done.
>Loaded symbols for /usr/lib/openbabel/mmodformat.so
>Reading symbols from /usr/lib/openbabel/pubchem.so...done.
>Loaded symbols for /usr/lib/openbabel/pubchem.so
>Reading symbols from /usr/lib/openbabel/pdbformat.so...done.
>Loaded symbols for /usr/lib/openbabel/pdbformat.so
>Reading symbols from /usr/lib/openbabel/alchemyformat.so...done.
>Loaded symbols for /usr/lib/openbabel/alchemyformat.so
>Reading symbols from /usr/lib/openbabel/titleformat.so...done.
>Loaded symbols for /usr/lib/openbabel/titleformat.so
>Reading symbols from /usr/lib/openbabel/cacheformat.so...done.
>Loaded symbols for /usr/lib/openbabel/cacheformat.so
>Reading symbols from /usr/lib/openbabel/smilesformat.so...done.
>Loaded symbols for /usr/lib/openbabel/smilesformat.so
>Reading symbols from /usr/lib/openbabel/unichemformat.so...done.
>Loaded symbols for /usr/lib/openbabel/unichemformat.so
>Reading symbols from /usr/lib/openbabel/dmolformat.so...done.
>Loaded symbols for /usr/lib/openbabel/dmolformat.so
>Reading symbols from /usr/lib/openbabel/APIInterface.so...done.
>Loaded symbols for /usr/lib/openbabel/APIInterface.so
>Reading symbols from /usr/lib/openbabel/pngformat.so...done.
>Loaded symbols for /usr/lib/openbabel/pngformat.so
>Reading symbols from /usr/lib/openbabel/mpdformat.so...done.
>Loaded symbols for /usr/lib/openbabel/mpdformat.so
>Reading symbols from /usr/lib/openbabel/cacaoformat.so...done.
>Loaded symbols for /usr/lib/openbabel/cacaoformat.so
>Reading symbols from /usr/lib/openbabel/molreportformat.so...done.
>Loaded symbols for /usr/lib/openbabel/molreportformat.so
>Reading symbols from /usr/lib/openbabel/amberformat.so...done.
>Loaded symbols for /usr/lib/openbabel/amberformat.so
>Reading symbols from /usr/lib/openbabel/mpqcformat.so...done.
>Loaded symbols for /usr/lib/openbabel/mpqcformat.so
>Reading symbols from /usr/lib/openbabel/qchemformat.so...done.
>Loaded symbols for /usr/lib/openbabel/qchemformat.so
>Reading symbols from /usr/lib/openbabel/zindoformat.so...done.
>Loaded symbols for /usr/lib/openbabel/zindoformat.so
>Reading symbols from /usr/lib/openbabel/chemdrawctformat.so...done.
>Loaded symbols for /usr/lib/openbabel/chemdrawctformat.so
>Reading symbols from /usr/lib/openbabel/nwchemformat.so...done.
>Loaded symbols for /usr/lib/openbabel/nwchemformat.so
>Reading symbols from /usr/lib/openbabel/chemkinformat.so...done.
>Loaded symbols for /usr/lib/openbabel/chemkinformat.so
>Reading symbols from /usr/lib/openbabel/viewmolformat.so...done.
>Loaded symbols for /usr/lib/openbabel/viewmolformat.so
>Reading symbols from /usr/lib/openbabel/gromos96format.so...done.
>Loaded symbols for /usr/lib/openbabel/gromos96format.so
>Reading symbols from /usr/lib/openbabel/fhformat.so...done.
>Loaded symbols for /usr/lib/openbabel/fhformat.so
>Reading symbols from /usr/lib/openbabel/mol2format.so...done.
>Loaded symbols for /usr/lib/openbabel/mol2format.so
>Reading symbols from /usr/lib/openbabel/xyzformat.so...done.
>Loaded symbols for /usr/lib/openbabel/xyzformat.so
>Reading symbols from /usr/lib/openbabel/thermoformat.so...done.
>Loaded symbols for /usr/lib/openbabel/thermoformat.so
>Reading symbols from /usr/lib/openbabel/cdxmlformat.so...done.
>Loaded symbols for /usr/lib/openbabel/cdxmlformat.so
>Reading symbols from /usr/lib/openbabel/turbomoleformat.so...done.
>Loaded symbols for /usr/lib/openbabel/turbomoleformat.so
>Reading symbols from /usr/lib/openbabel/CSRformat.so...done.
>Loaded symbols for /usr/lib/openbabel/CSRformat.so
>Reading symbols from /usr/lib/openbabel/carformat.so...done.
>Loaded symbols for /usr/lib/openbabel/carformat.so
>Reading symbols from /usr/lib/openbabel/gausscubeformat.so...done.
>Loaded symbols for /usr/lib/openbabel/gausscubeformat.so
>Reading symbols from /usr/lib/openbabel/inchiformat.so...done.
>Loaded symbols for /usr/lib/openbabel/inchiformat.so
>Reading symbols from /usr/lib/libinchi.so.1...done.
>Loaded symbols for /usr/lib/libinchi.so.1
>Reading symbols from /usr/lib/openbabel/mopacformat.so...done.
>Loaded symbols for /usr/lib/openbabel/mopacformat.so
>Reading symbols from /usr/lib/openbabel/ghemicalformat.so...done.
>Loaded symbols for /usr/lib/openbabel/ghemicalformat.so
>Reading symbols from /usr/lib/openbabel/cmlformat.so...done.
>Loaded symbols for /usr/lib/openbabel/cmlformat.so
>Reading symbols from /usr/lib/openbabel/jaguarformat.so...done.
>Loaded symbols for /usr/lib/openbabel/jaguarformat.so
>Reading symbols from /usr/lib/openbabel/fingerprintformat.so...done.
>Loaded symbols for /usr/lib/openbabel/fingerprintformat.so
>Reading symbols from /usr/lib/openbabel/fchkformat.so...done.
>Loaded symbols for /usr/lib/openbabel/fchkformat.so
>Reading symbols from /usr/lib/openbabel/featformat.so...done.
>Loaded symbols for /usr/lib/openbabel/featformat.so
>Reading symbols from /usr/lib/openbabel/mdlformat.so...done.
>Loaded symbols for /usr/lib/openbabel/mdlformat.so
>Reading symbols from /usr/lib/openbabel/cifformat.so...done.
>Loaded symbols for /usr/lib/openbabel/cifformat.so
>Reading symbols from /usr/lib/openbabel/gaussformat.so...done.
>Loaded symbols for /usr/lib/openbabel/gaussformat.so
>Reading symbols from /usr/lib/openbabel/copyformat.so...done.
>Loaded symbols for /usr/lib/openbabel/copyformat.so
>Reading symbols from /usr/lib/openbabel/gausszmatformat.so...done.
>Loaded symbols for /usr/lib/openbabel/gausszmatformat.so
>Reading symbols from /usr/lib/openbabel/yasaraformat.so...done.
>Loaded symbols for /usr/lib/openbabel/yasaraformat.so
>Reading symbols from /usr/lib/openbabel/crkformat.so...done.
>Loaded symbols for /usr/lib/openbabel/crkformat.so
>Reading symbols from /usr/lib/openbabel/fastsearchformat.so...done.
>Loaded symbols for /usr/lib/openbabel/fastsearchformat.so
>Reading symbols from /usr/lib/openbabel/msiformat.so...done.
>Loaded symbols for /usr/lib/openbabel/msiformat.so
>Reading symbols from /usr/lib/openbabel/shelxformat.so...done.
>Loaded symbols for /usr/lib/openbabel/shelxformat.so
>Core was generated by `xdrawchem'.
>Program terminated with signal 11, Segmentation fault.
>[New process 29893]
>#0  ApplicationWindow::OBGetFilters (this=0x8a74168) at application_ob.cpp:56
>56	      if(pFormat->Flags() & NOTREADABLE)
>Missing separate debuginfos, use: debuginfo-install expat.i386 freetype.i386 gcc.i386 inchi.i386 kdelibs3.i386 lcms.i386 libICE.i386 libSM.i386 libXau.i386 libXcursor.i386 libXdmcp.i386 libXfixes.i386 libXft.i386 libXi.i386 libXinerama.i386 libXrandr.i386 libXrender.i386 libjpeg.i386 libmng.i386 libxml2.i386 openbabel.i386 qt3.i386
>(gdb) thread apply all bt
>
>Thread 1 (process 29893):
>#0  ApplicationWindow::OBGetFilters (this=0x8a74168) at application_ob.cpp:56
>#1  0x08062a89 in ApplicationWindow (this=0x8a74168) at application.cpp:162
>#2  0x081152c1 in main (argc=Cannot access memory at address 0x6c
>) at main.cpp:143
>(gdb) qui
>]0;tasaka1@localhost:~/rpmbuild/TEMP[tasaka1@localhost TEMP]$ exit
>
>Script done on Tue May 20 20:42:49 2008

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Attachments on bug 447531: 306109 | 306110