Attachment 370911 Details for Bug 538970 – build.log

build.log

build.log (text/plain), 23.47 KB, created by FTBFS on 2009-11-19 16:15:58 UTC

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Created: 2009-11-19 16:15:58 UTC

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patch

obsolete

>Mock Version: 0.9.19
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target i386 --nodeps builddir/build/SPECS/R-multtest.spec'], False, '/var/lib/mock/fedora-development-i386-R-multtest-2.0.0-2.fc12.src.rpm/root/', None, 21600, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0xe428d0>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target i386 --nodeps builddir/build/SPECS/R-multtest.spec']
>Building target platforms: i386
>Building for target i386
>Wrote: /builddir/build/SRPMS/R-multtest-2.0.0-2.fc13.src.rpm
>Child returncode was: 0
>LEAVE do --> 
>
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/R-multtest.spec'], False, '/var/lib/mock/fedora-development-i386-R-multtest-2.0.0-2.fc12.src.rpm/root/', None, 21600, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0xe428d0>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/R-multtest.spec']
>Building target platforms: i386
>Building for target i386
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0jOonE
>+ umask 022
>+ cd /builddir/build/BUILD
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ cd /builddir/build/BUILD
>+ rm -rf multtest
>+ /bin/mkdir -p multtest
>+ cd multtest
>+ /usr/bin/gzip -dc /builddir/build/SOURCES/multtest_2.0.0.tar.gz
>+ /bin/tar -xf -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.XMr8Sb
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd multtest
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ exit 0
>Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.GrcrqJ
>+ umask 022
>+ cd /builddir/build/BUILD
>+ '[' /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386 '!=' / ']'
>+ rm -rf /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386
>++ dirname /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386
>+ mkdir -p /builddir/build/BUILDROOT
>+ mkdir /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386
>+ cd multtest
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ /bin/rm -rf /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386
>+ chmod -x multtest/inst/doc/MTP.pdf multtest/inst/doc/MTP.tex multtest/inst/doc/MTPALL.pdf multtest/inst/doc/Rplots.ps multtest/inst/doc/golub.R multtest/inst/doc/multtest.bib multtest/inst/doc/multtest.pdf
>+ chmod -x multtest/src/Rpack.c multtest/src/VScount.c multtest/src/block_sampling_fixed.c multtest/src/bootloop.c multtest/src/mt.c multtest/src/pairt_sampling.c multtest/src/pairt_sampling_fixed.c multtest/src/random.c multtest/src/sampling.c multtest/src/sampling_fixed.c multtest/src/stat_func.c multtest/src/stat_order.c
>+ chmod -x multtest/src/mt.h
>+ chmod -x multtest/DESCRIPTION
>+ /bin/sed -i -e 's/\r$//' multtest/inst/doc/multtest.bib
>+ /bin/sed -i -e 's/\r$//' multtest/inst/doc/MTP.tex
>+ /bin/sed -i -e 's/\r$//' multtest/inst/doc/Rplots.ps
>+ mkdir -p /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library
>+ R CMD INSTALL multtest -l /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library
>* installing *source* package 'multtest' ...
>** libs
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Rpack.c -o Rpack.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c VScount.c -o VScount.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c block_sampling_fixed.c -o block_sampling_fixed.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bootloop.c -o bootloop.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mt.c -o mt.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pairt_sampling.c -o pairt_sampling.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c random.c -o random.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sampling.c -o sampling.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sampling_fixed.c -o sampling_fixed.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c stat_func.c -o stat_func.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DUSEDOUBLE -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c stat_order.c -o stat_order.o
>gcc -m32 -std=gnu99 -shared -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -L/usr/lib/R/lib -lR
>** R
>** data
>** inst
>** preparing package for lazy loading
>Warning: package 'Biobase' was built under R version 2.9.1 and help may not work correctly
>Welcome to Bioconductor
>  Vignettes contain introductory material. To view, type
>  'openVignette()'. To cite Bioconductor, see
>  'citation("Biobase")' and for packages 'citation(pkgname)'.
>Creating a new generic function for "as.list" in "multtest"
>** help
>*** installing help indices
>** building package indices ...
>* DONE (multtest)
>+ test -d multtest/src
>+ cd multtest/src
>+ rm -f Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o multtest.so
>+ /bin/rm -rf /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/R.css
>+ chmod -x /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/otherDocs/MTP.Rnw /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/otherDocs/MTPALL.Rnw /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/otherDocs/multtest.Rnw
>+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id /builddir/build/BUILD/multtest
>extracting debug info from /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/libs/multtest.so
>164 blocks
>+ /usr/lib/rpm/check-buildroot
>+ /usr/lib/rpm/redhat/brp-compress
>+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
>+ /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
>+ /usr/lib/rpm/brp-python-bytecompile
>+ /usr/lib/rpm/redhat/brp-python-hardlink
>+ /usr/lib/rpm/redhat/brp-java-repack-jars
>Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.RnzG0M
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd multtest
>+ unset DISPLAY
>+ /usr/bin/R CMD check multtest
>* checking for working pdflatex ...kpathsea: Running mktexfmt pdflatex.fmt
>fmtutil: running `pdftex -ini   -jobname=pdflatex -progname=pdflatex -translate-file=cp227.tcx *pdflatex.ini' ...
>This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) (INITEX)
> %&-line parsing enabled.
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>(/var/lib/texmf/tex/generic/config/pdftexconfig.tex)
>(/usr/share/texmf/tex/latex/base/latex.ltx
>(/usr/share/texmf/tex/latex/base/texsys.cfg)
>./texsys.aux found
>\@currdir set to: ./.
>Assuming \openin and \input 
>have the same search path.
>Defining UNIX/DOS style filename parser.
>catcodes, registers, compatibility for TeX 2,  parameters,
>LaTeX2e <2005/12/01>
>hacks, control, par, spacing, files, font encodings, lengths,
>====================================
>Local config file fonttext.cfg used
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>====================================
>Local config file fontmath.cfg used
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>====================================
>Local config file preload.cfg used
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>(/usr/share/texmf/tex/latex/base/preload.ltx)) page nos., x-ref, environments,
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>floats, footnotes, index, bibliography, output,
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>(/usr/share/texmf/tex/generic/xu-hyphen/xu-bghyphen.tex
>(/usr/share/texmf/tex/generic/bghyphen/bghyphen.tex
>Bulgarian hyphenation patterns
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>Ukrainian hyphenation patterns in t2a encoding
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>=================================
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>\font\OT1/cmr/m/n/10=cmr10
>\font\OML/cmm/m/it/5=cmmi5
>\font\OML/cmm/m/it/7=cmmi7
>\font\OML/cmm/m/it/10=cmmi10
>\font\OMS/cmsy/m/n/5=cmsy5
>\font\OMS/cmsy/m/n/7=cmsy7
>\font\OMS/cmsy/m/n/10=cmsy10
>3633 words of font info for 14 preloaded fonts
>645 hyphenation exceptions
>Hyphenation trie of length 172735 has 4897 ops out of 35111
>  138 for language 47
>  224 for language 46
>  13 for language 45
>  127 for language 44
>  62 for language 43
>  110 for language 42
>  71 for language 41
>  119 for language 40
>  68 for language 39
>  2 for language 38
>  7 for language 37
>  194 for language 36
>  756 for language 35
>  265 for language 34
>  21 for language 33
>  26 for language 32
>  35 for language 31
>  147 for language 30
>  21 for language 29
>  98 for language 28
>  38 for language 27
>  117 for language 26
>  19 for language 25
>  98 for language 24
>  18 for language 23
>  50 for language 22
>  88 for language 21
>  31 for language 20
>  45 for language 18
>  18 for language 17
>  21 for language 16
>  158 for language 15
>  145 for language 14
>  60 for language 13
>  235 for language 12
>  207 for language 11
>  248 for language 10
>  63 for language 9
>  143 for language 8
>  14 for language 7
>  12 for language 6
>  5 for language 5
>  2 for language 2
>  377 for language 1
>  181 for language 0
>No pages of output.
>Transcript written on pdflatex.log.
>fmtutil: /builddir/.texlive2007/texmf-var/web2c/pdftex/pdflatex.fmt installed.
> OK
>* using log directory '/builddir/build/BUILD/multtest/multtest.Rcheck'
>* using R version 2.10.0 (2009-10-26)
>* using session charset: UTF-8
>* checking for file 'multtest/DESCRIPTION' ... OK
>* this is package 'multtest' version '2.0.0'
>* checking package name space information ... OK
>* checking package dependencies ... OK
>* checking if this is a source package ... OK
>* checking for executable files ... OK
>* checking whether package 'multtest' can be installed ... WARNING
>Found the following significant warnings:
>  Warning: package 'Biobase' was built under R version 2.9.1 and help may not work correctly
>See '/builddir/build/BUILD/multtest/multtest.Rcheck/00install.out' for details.
>* checking package directory ... OK
>* checking for portable file names ... OK
>* checking for sufficient/correct file permissions ... OK
>* checking DESCRIPTION meta-information ... OK
>* checking top-level files ... OK
>* checking index information ... OK
>* checking package subdirectories ... OK
>* checking R files for non-ASCII characters ... OK
>* checking R files for syntax errors ... OK
>* checking whether the package can be loaded ... OK
>* checking whether the package can be loaded with stated dependencies ... OK
>* checking whether the name space can be loaded with stated dependencies ... OK
>* checking for unstated dependencies in R code ... OK
>* checking S3 generic/method consistency ... OK
>* checking replacement functions ... OK
>* checking foreign function calls ... OK
>* checking R code for possible problems ... NOTE
>boot.null: no visible global function definition for âclusterApplyâ
>boot.null: no visible global function definition for âclusterApplyLBâ
>EBMTP: no visible global function definition for âmakeClusterâ
>EBMTP: no visible global function definition for âclusterEvalQâ
>EBMTP: no visible global function definition for âstopClusterâ
>EBMTP: no visible binding for global variable âVâ
>EBMTP: no visible binding for global variable âSâ
>lmX : <anonymous>: no visible global function definition for ârlmâ
>lmY : <anonymous>: no visible global function definition for ârlmâ
>MTP: no visible global function definition for âmakeClusterâ
>MTP: no visible global function definition for âclusterEvalQâ
>MTP: no visible global function definition for âstopClusterâ
>* checking Rd files ... OK
>* checking Rd metadata ... OK
>* checking Rd cross-references ... OK
>* checking for missing documentation entries ... OK
>* checking for code/documentation mismatches ... OK
>* checking Rd \usage sections ... OK
>* checking data for non-ASCII characters ... OK
>* checking line endings in C/C++/Fortran sources/headers ... OK
>* checking line endings in Makefiles ... OK
>* checking for portable compilation flags in Makevars ... OK
>* checking for portable use of $BLAS_LIBS ... OK
>* checking examples ... OK
>* checking PDF version of manual ... OK
>WARNING: There was 1 warning, see
>  /builddir/build/BUILD/multtest/multtest.Rcheck/00check.log
>for details
>Processing files: R-multtest-2.0.0-2.fc13.i386
>+ exit 0
>error: File not found: /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/latex
>error: File not found: /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/man
>error: File not found: /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/CONTENTS
>error: File not found: /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/R-ex
>RPM build errors:
>    File not found: /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/latex
>    File not found: /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/man
>    File not found: /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/CONTENTS
>    File not found: /builddir/build/BUILDROOT/R-multtest-2.0.0-2.fc13.i386/usr/lib/R/library/multtest/R-ex
>Child returncode was: 1
>EXCEPTION: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/R-multtest.spec']
>Traceback (most recent call last):
>  File "/usr/lib/python2.6/site-packages/mock/trace_decorator.py", line 70, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python2.6/site-packages/mock/util.py", line 324, in do
>    raise mock.exception.Error, ("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>Error: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/R-multtest.spec']
>LEAVE do --> EXCEPTION RAISED
>

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Attachments on bug 538970: 370910 | 370911 | 370912 | 370913 | 370914 | 370915