Attachment 371346 Details for Bug 539050 – build.log

build.log

build.log (text/plain), 5.09 KB, created by FTBFS on 2009-11-19 16:35:51 UTC

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Creator: FTBFS

Created: 2009-11-19 16:35:51 UTC

Size: 5.09 KB

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obsolete

>Mock Version: 0.9.19
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target i386 --nodeps builddir/build/SPECS/R-BSgenome.spec'], False, '/var/lib/mock/fedora-development-i386-R-BSgenome-1.12.3-2.fc12.src.rpm/root/', None, 21600, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x14d78d0>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target i386 --nodeps builddir/build/SPECS/R-BSgenome.spec']
>Building target platforms: i386
>Building for target i386
>Wrote: /builddir/build/SRPMS/R-BSgenome-1.12.3-2.fc13.src.rpm
>Child returncode was: 0
>LEAVE do --> 
>
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/R-BSgenome.spec'], False, '/var/lib/mock/fedora-development-i386-R-BSgenome-1.12.3-2.fc12.src.rpm/root/', None, 21600, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x14d78d0>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/R-BSgenome.spec']
>Building target platforms: i386
>Building for target i386
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1msQz9
>+ umask 022
>+ cd /builddir/build/BUILD
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ cd /builddir/build/BUILD
>+ rm -rf BSgenome
>+ /bin/mkdir -p BSgenome
>+ cd BSgenome
>+ /usr/bin/gzip -dc /builddir/build/SOURCES/BSgenome_1.12.3.tar.gz
>+ /bin/tar -xf -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.fmaEIm
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd BSgenome
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ exit 0
>Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ZdElSz
>+ umask 022
>+ cd /builddir/build/BUILD
>+ '[' /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386 '!=' / ']'
>+ rm -rf /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386
>++ dirname /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386
>+ mkdir -p /builddir/build/BUILDROOT
>+ mkdir /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386
>+ cd BSgenome
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ rm -rf /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386
>+ mkdir -p /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library
>+ R CMD INSTALL BSgenome -l /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library
>* installing *source* package 'BSgenome' ...
>** R
>** inst
>** preparing package for lazy loading
>Warning: package 'IRanges' was built under R version 2.9.1 and help may not work correctly
>Attaching package: 'IRanges'
>	The following object(s) are masked from package:base :
>	 cbind,
>	 duplicated,
>	 order,
>	 pmax,
>	 pmax.int,
>	 pmin,
>	 pmin.int,
>	 rank,
>	 rbind,
>	 rep.int,
>	 sapply,
>	 sort,
>	 table,
>	 unique 
>Warning: package 'Biostrings' was built under R version 2.9.2 and help may not work correctly
>** help
>*** installing help indices
>** building package indices ...
>* DONE (BSgenome)
>+ test -d BSgenome/src
>+ rm -rf /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library/R.css
>+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id /builddir/build/BUILD/BSgenome
>+ /usr/lib/rpm/check-buildroot
>+ /usr/lib/rpm/redhat/brp-compress
>+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
>+ /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
>+ /usr/lib/rpm/brp-python-bytecompile
>+ /usr/lib/rpm/redhat/brp-python-hardlink
>+ /usr/lib/rpm/redhat/brp-java-repack-jars
>Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.L6Vgu2
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd BSgenome
>+ unset DISPLAY
>+ exit 0
>Processing files: R-BSgenome-1.12.3-2.fc13.noarch
>error: File not found: /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library/BSgenome/latex
>error: File not found: /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library/BSgenome/man
>error: File not found: /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library/BSgenome/R-ex
>error: File not found: /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library/BSgenome/CONTENTS
>RPM build errors:
>    File not found: /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library/BSgenome/latex
>    File not found: /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library/BSgenome/man
>    File not found: /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library/BSgenome/R-ex
>    File not found: /builddir/build/BUILDROOT/R-BSgenome-1.12.3-2.fc13.i386/usr/share/R/library/BSgenome/CONTENTS
>Child returncode was: 1
>EXCEPTION: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/R-BSgenome.spec']
>Traceback (most recent call last):
>  File "/usr/lib/python2.6/site-packages/mock/trace_decorator.py", line 70, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python2.6/site-packages/mock/util.py", line 324, in do
>    raise mock.exception.Error, ("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>Error: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/R-BSgenome.spec']
>LEAVE do --> EXCEPTION RAISED
>

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