Attachment 371815 Details for Bug 539137 – build.log

build.log

build.log (text/plain), 6.43 KB, created by FTBFS on 2009-11-19 16:56:43 UTC

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Creator: FTBFS

Created: 2009-11-19 16:56:43 UTC

Size: 6.43 KB

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obsolete

>Mock Version: 0.9.19
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target x86_64 --nodeps builddir/build/SPECS/R-Biobase.spec'], False, '/var/lib/mock/fedora-development-x86_64-R-Biobase-2.4.1-2.fc12.src.rpm/root/', None, 21600, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x10d8890>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target x86_64 --nodeps builddir/build/SPECS/R-Biobase.spec']
>Building target platforms: x86_64
>Building for target x86_64
>Wrote: /builddir/build/SRPMS/R-Biobase-2.4.1-2.fc13.src.rpm
>Child returncode was: 0
>LEAVE do --> 
>
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/R-Biobase.spec'], False, '/var/lib/mock/fedora-development-x86_64-R-Biobase-2.4.1-2.fc12.src.rpm/root/', None, 21600, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x10d8890>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/R-Biobase.spec']
>Building target platforms: x86_64
>Building for target x86_64
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.GCB1ZQ
>+ umask 022
>+ cd /builddir/build/BUILD
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ cd /builddir/build/BUILD
>+ rm -rf Biobase
>+ /bin/mkdir -p Biobase
>+ cd Biobase
>+ /usr/bin/gzip -dc /builddir/build/SOURCES/Biobase_2.4.1.tar.gz
>+ /bin/tar -xf -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.tdZM0w
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd Biobase
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ exit 0
>Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.nW6e2c
>+ umask 022
>+ cd /builddir/build/BUILD
>+ '[' /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64 '!=' / ']'
>+ rm -rf /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64
>++ dirname /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64
>+ mkdir -p /builddir/build/BUILDROOT
>+ mkdir /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64
>+ cd Biobase
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ rm -rf /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64
>+ mkdir -p /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library
>+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library Biobase
>* installing *source* package 'Biobase' ...
>** libs
>gcc -m64 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c Rinit.c -o Rinit.o
>gcc -m64 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c anyMissing.c -o anyMissing.o
>gcc -m64 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c envir.c -o envir.o
>gcc -m64 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c matchpt.c -o matchpt.o
>gcc -m64 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c rowMedians.c -o rowMedians.o
>gcc -m64 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c sublist_extract.c -o sublist_extract.o
>gcc -m64 -std=gnu99 -shared -L/usr/local/lib64 -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib64/R/lib -lR
>** R
>** data
>** inst
>** preparing package for lazy loading
>** help
>Warning: ./man/createPackage.Rd:41: unknown macro '\date'
>*** installing help indices
>** building package indices ...
>* DONE (Biobase)
>+ test -d Biobase/src
>+ cd Biobase/src
>+ rm -f Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o Biobase.so
>+ rm -rf /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/R.css
>+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id /builddir/build/BUILD/Biobase
>extracting debug info from /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/Biobase/libs/Biobase.so
>50 blocks
>+ /usr/lib/rpm/check-buildroot
>+ /usr/lib/rpm/redhat/brp-compress
>+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
>+ /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
>+ /usr/lib/rpm/brp-python-bytecompile
>+ /usr/lib/rpm/redhat/brp-python-hardlink
>+ /usr/lib/rpm/redhat/brp-java-repack-jars
>Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.4Hg4Xn
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd Biobase
>+ unset DISPLAY
>+ exit 0
>Processing files: R-Biobase-2.4.1-2.fc13.x86_64
>error: File not found: /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/Biobase/CONTENTS
>error: File not found: /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/Biobase/R-ex
>error: File not found: /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/Biobase/latex
>RPM build errors:
>error: File not found: /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/Biobase/man
>    File not found: /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/Biobase/CONTENTS
>    File not found: /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/Biobase/R-ex
>    File not found: /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/Biobase/latex
>    File not found: /builddir/build/BUILDROOT/R-Biobase-2.4.1-2.fc13.x86_64/usr/lib64/R/library/Biobase/man
>Child returncode was: 1
>EXCEPTION: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/R-Biobase.spec']
>Traceback (most recent call last):
>  File "/usr/lib/python2.6/site-packages/mock/trace_decorator.py", line 70, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python2.6/site-packages/mock/util.py", line 324, in do
>    raise mock.exception.Error, ("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>Error: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/R-Biobase.spec']
>LEAVE do --> EXCEPTION RAISED
>

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Attachments on bug 539137: 371811 | 371812 | 371813 | 371814 | 371815 | 371816