Attachment 391512 Details for Bug 564749 – build.log

build.log

build.log (text/plain), 3.68 KB, created by FTBFS on 2010-02-13 16:48:06 UTC

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Creator: FTBFS

Created: 2010-02-13 16:48:06 UTC

Size: 3.68 KB

patch

obsolete

>Mock Version: 1.0.1
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target i386 --nodeps builddir/build/SPECS/python-biopython.spec'], False, '/var/lib/mock/fedora-development-i386-python-biopython-1.53-1.fc13.src.rpm/root/', None, 25200, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x1301890>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target i386 --nodeps builddir/build/SPECS/python-biopython.spec']
>sh: /usr/bin/python: No such file or directory
>sh: /usr/bin/python: No such file or directory
>sh: /usr/bin/python: No such file or directory
>sh: /usr/bin/python: No such file or directory
>sh: /usr/bin/python: No such file or directory
>Building target platforms: i386
>Building for target i386
>Wrote: /builddir/build/SRPMS/python-biopython-1.53-1.fc13.src.rpm
>Child returncode was: 0
>LEAVE do --> 
>
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/python-biopython.spec'], False, '/var/lib/mock/fedora-development-i386-python-biopython-1.53-1.fc13.src.rpm/root/', None, 25200, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x1301890>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/python-biopython.spec']
>Building target platforms: i386
>Building for target i386
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.YtJCED
>+ umask 022
>+ cd /builddir/build/BUILD
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ cd /builddir/build/BUILD
>+ rm -rf biopython-1.53
>+ /usr/bin/gzip -dc /builddir/build/SOURCES/biopython-1.53.tar.gz
>+ /bin/tar -xf -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ cd biopython-1.53
>+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ echo 'Patch #0 (python-biopython-1.51-enable-flex.patch):'
>Patch #0 (python-biopython-1.51-enable-flex.patch):
>+ /bin/cat /builddir/build/SOURCES/python-biopython-1.51-enable-flex.patch
>+ /usr/bin/patch -s -p0 --fuzz=0
>+ find Scripts -type f -exec chmod -x '{}' ';'
>+ find Doc -type f -exec chmod -x '{}' ';'
>+ find Doc -type f -exec sed -i 's/\r//' '{}' ';'
>+ find Bio -type f -exec chmod -x '{}' ';'
>+ find Bio -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' '{}' ';'
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nYhIuY
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd biopython-1.53
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ env 'CFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables' /usr/bin/python setup.py build
>running build
>running build_py
>Numerical Python (NumPy) is not installed.
>This package is required for many Biopython features.  Please install
>it before you install Biopython. You can install Biopython anyway, but
>anything dependent on NumPy will not work. If you do this, and later
>install NumPy, you should then re-install Biopython.
>You can find NumPy at http://numpy.scipy.org
>error: Bad exit status from /var/tmp/rpm-tmp.nYhIuY (%build)
>RPM build errors:
>    Bad exit status from /var/tmp/rpm-tmp.nYhIuY (%build)
>Child returncode was: 1
>EXCEPTION: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/python-biopython.spec']
>Traceback (most recent call last):
>  File "/usr/lib/python2.6/site-packages/mock/trace_decorator.py", line 70, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python2.6/site-packages/mock/util.py", line 324, in do
>    raise mock.exception.Error, ("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>Error: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i386 --nodeps builddir/build/SPECS/python-biopython.spec']
>LEAVE do --> EXCEPTION RAISED
>

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