Attachment 393114 Details for Bug 565030 – build.log

build.log

build.log (text/plain), 14.08 KB, created by FTBFS on 2010-02-13 17:40:54 UTC

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Creator: FTBFS

Created: 2010-02-13 17:40:54 UTC

Size: 14.08 KB

patch

obsolete

>Mock Version: 1.0.1
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target x86_64 --nodeps builddir/build/SPECS/mpqc.spec'], False, '/var/lib/mock/fedora-development-x86_64-mpqc-2.3.1-12.fc13.src.rpm/root/', None, 25200, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x2653850>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target x86_64 --nodeps builddir/build/SPECS/mpqc.spec']
>Building target platforms: x86_64
>Building for target x86_64
>Wrote: /builddir/build/SRPMS/mpqc-2.3.1-12.fc13.src.rpm
>Child returncode was: 0
>LEAVE do --> 
>
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/mpqc.spec'], False, '/var/lib/mock/fedora-development-x86_64-mpqc-2.3.1-12.fc13.src.rpm/root/', None, 25200, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x2653850>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/mpqc.spec']
>Building target platforms: x86_64
>Building for target x86_64
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.EVOAp4
>+ umask 022
>+ cd /builddir/build/BUILD
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ cd /builddir/build/BUILD
>+ rm -rf mpqc-2.3.1
>+ /usr/bin/bzip2 -dc /builddir/build/SOURCES/mpqc-2.3.1.tar.bz2
>+ /bin/tar -xf -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ cd mpqc-2.3.1
>+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
>Patch #0 (mpqc-2.3.1-mdv-fix-wfn-lib.patch):
>+ echo 'Patch #0 (mpqc-2.3.1-mdv-fix-wfn-lib.patch):'
>+ /bin/cat /builddir/build/SOURCES/mpqc-2.3.1-mdv-fix-wfn-lib.patch
>+ /usr/bin/patch -s -p1 --fuzz=0
>+ sed -i -e s,molrender.in,/usr/share/molrender/molrender.in,g src/bin/molrender/tkmolrender.in
>+ sed -i -e s,prefix/lib,prefix/lib64,g configure.in
>+ cat
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YeR5ER
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd mpqc-2.3.1
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ export F77=gfortran
>+ F77=gfortran
>+ autoconf
>configure.in:1751: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
>../../lib/autoconf/general.m4:1998: AC_CACHE_VAL is expanded from...
>../../lib/autoconf/general.m4:2019: AC_CACHE_CHECK is expanded from...
>lib/autoconf/libtool.m4:658: AC_LIBTOOL_COMPILER_OPTION is expanded from...
>lib/autoconf/libtool.m4:4895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
>lib/autoconf/libtool.m4:2731: _LT_AC_LANG_C_CONFIG is expanded from...
>lib/autoconf/libtool.m4:2730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
>lib/autoconf/libtool.m4:80: AC_LIBTOOL_SETUP is expanded from...
>lib/autoconf/libtool.m4:60: _AC_PROG_LIBTOOL is expanded from...
>lib/autoconf/libtool.m4:25: AC_PROG_LIBTOOL is expanded from...
>configure.in:1751: the top level
>configure.in:1751: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
>lib/autoconf/libtool.m4:703: AC_LIBTOOL_LINKER_OPTION is expanded from...
>configure.in:1751: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
>lib/autoconf/libtool.m4:2812: _LT_AC_LANG_CXX_CONFIG is expanded from...
>lib/autoconf/libtool.m4:2811: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
>lib/autoconf/libtool.m4:1867: _LT_AC_TAGCONFIG is expanded from...
>configure.in:1751: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
>configure.in:1751: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
>lib/autoconf/libtool.m4:3979: _LT_AC_LANG_F77_CONFIG is expanded from...
>lib/autoconf/libtool.m4:3978: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
>configure.in:1751: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
>configure.in:1751: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
>lib/autoconf/libtool.m4:4081: _LT_AC_LANG_GCJ_CONFIG is expanded from...
>lib/autoconf/libtool.m4:4080: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
>configure.in:1751: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
>+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic'
>+ export CFLAGS
>+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic'
>+ export CXXFLAGS
>+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
>+ export FFLAGS
>+ ./configure --build=x86_64-unknown-linux-gnu --host=x86_64-unknown-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads --disable-static --disable-parallel --includedir=/usr/include/mpqc --with-libdirs=-L/usr/lib64/atlas '--with-cxx-optflags=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic' '--with-cc-optflags=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic'
>configure: WARNING: unrecognized options: --disable-dependency-tracking
>checking build system type... x86_64-unknown-linux-gnu
>checking host system type... x86_64-unknown-linux-gnu
>checking target system type... x86_64-unknown-linux-gnu
>Using extra library directories: -L/usr/lib64/atlas
>checking whether ln -s works... yes
>checking for a BSD-compatible install... /usr/bin/install -c
>checking for x86_64-unknown-linux-gnu-ranlib... no
>checking for ranlib... ranlib
>checking for x86_64-unknown-linux-gnu-gcc... no
>checking for gcc... gcc
>checking whether the C compiler works... yes
>checking for C compiler default output file name... a.out
>checking for suffix of executables... 
>checking whether we are cross compiling... no
>checking for suffix of object files... o
>checking whether we are using the GNU C compiler... yes
>checking whether gcc accepts -g... yes
>checking for gcc option to accept ISO C89... none needed
>checking for g++... g++
>checking whether we are using the GNU C++ compiler... yes
>checking whether g++ accepts -g... yes
>checking for x86_64-unknown-linux-gnu-g77... gfortran
>checking whether we are using the GNU Fortran 77 compiler... yes
>checking whether gfortran accepts -g... yes
>checking how to get verbose linking output from gfortran... -v
>checking for Fortran 77 libraries of gfortran...  -L/usr/lib64/atlas -L/usr/lib/gcc/x86_64-redhat-linux/4.4.3 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.3/../../.. -lgfortranbegin -lgfortran -lm
>checking how to run the C preprocessor... gcc -E
>checking how to run the C++ preprocessor... g++ -E
>checking for ar... ar
>checking for perl... perl
>checking for wish... /usr/bin/wish
>checking for dot... NO
>checking for miscellaneous flags... none
>checking for special optimization options... "none"
>checking for C++ cpu tuning flag... -mtune
>checking for C cpu tuning flag... -mtune
>checking for special architecture options... "none"
>configure: "overriding C optimization flags with -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic"
>configure: "overriding C++ optimization flags with -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic"
>checking "for C++ typename keyword"... "yes"
>checking for grep that handles long lines and -e... /bin/grep
>checking for egrep... /bin/grep -E
>checking for ANSI C header files... yes
>checking for sys/types.h... yes
>checking for sys/stat.h... yes
>checking for stdlib.h... yes
>checking for string.h... yes
>checking for memory.h... yes
>checking for strings.h... yes
>checking for inttypes.h... yes
>checking for stdint.h... yes
>checking for unistd.h... yes
>checking iostream usability... yes
>checking iostream presence... yes
>checking for iostream... yes
>checking sstream usability... yes
>checking sstream presence... yes
>checking for sstream... yes
>checking iostream name... iostream
>checking "for namespace std"... "yes"
>checking "for GNU libc++-v3 prerelease bug"... "no"
>checking fp.h usability... no
>checking fp.h presence... no
>checking for fp.h... no
>checking endian.h usability... yes
>checking endian.h presence... yes
>checking for endian.h... yes
>checking machine/endian.h usability... no
>checking machine/endian.h presence... no
>checking for machine/endian.h... no
>checking sys/endian.h usability... no
>checking sys/endian.h presence... no
>checking for sys/endian.h... no
>checking sys/machine.h usability... no
>checking sys/machine.h presence... no
>checking for sys/machine.h... no
>checking whether byte ordering is bigendian... no
>checking pthreads... yes
>checking for pthread_attr_getstacksize... yes
>checking for pthread_attr_setstacksize... yes
>checking for pthread_attr_setscope... yes
>checking for pthread_attr_getscope... yes
>checking for pthread_attr_setinheritsched... yes
>checking for pthread_attr_getinheritsched... yes
>checking for pthread_attr_setschedpolicy... yes
>checking for pthread_attr_getschedpolicy... yes
>checking for pthread_attr_setschedparam... yes
>checking for pthread_attr_getschedparam... yes
>checking for sched_get_priority_max... yes
>checking for sched_get_priority_min... yes
>checking for main in -ldl... yes
>checking for main in -lm... yes
>checking for main in -lfl... yes
>checking perf.h usability... no
>checking perf.h presence... no
>checking for perf.h... no
>checking execinfo.h usability... yes
>checking execinfo.h presence... yes
>checking for execinfo.h... yes
>checking for backtrace... yes
>checking for backtrace_symbols_fd... yes
>checking armci.h usability... no
>checking armci.h presence... no
>checking for armci.h... no
>checking for ANSI C header files... (cached) yes
>checking fcntl.h usability... yes
>checking fcntl.h presence... yes
>checking for fcntl.h... yes
>checking limits.h usability... yes
>checking limits.h presence... yes
>checking for limits.h... yes
>checking sys/ioctl.h usability... yes
>checking sys/ioctl.h presence... yes
>checking for sys/ioctl.h... yes
>checking sys/time.h usability... yes
>checking sys/time.h presence... yes
>checking for sys/time.h... yes
>checking for unistd.h... (cached) yes
>checking pwd.h usability... yes
>checking pwd.h presence... yes
>checking for pwd.h... yes
>checking sys/times.h usability... yes
>checking sys/times.h presence... yes
>checking for sys/times.h... yes
>checking sys/resource.h usability... yes
>checking sys/resource.h presence... yes
>checking for sys/resource.h... yes
>checking time.h usability... yes
>checking time.h presence... yes
>checking for time.h... yes
>checking machine/fpu.h usability... no
>checking machine/fpu.h presence... no
>checking for machine/fpu.h... no
>checking asm/fpu.h usability... no
>checking asm/fpu.h presence... no
>checking for asm/fpu.h... no
>checking termios.h usability... yes
>checking termios.h presence... yes
>checking for termios.h... yes
>checking for sys/stat.h... (cached) yes
>checking for sys/types.h... (cached) yes
>checking dlfcn.h usability... yes
>checking dlfcn.h presence... yes
>checking for dlfcn.h... yes
>checking for stdint.h... (cached) yes
>checking for an ANSI C-conforming const... yes
>checking for size_t... yes
>checking whether struct tm is in sys/time.h or time.h... time.h
>checking return type of signal handlers... void
>checking for vprintf... yes
>checking for _doprnt... no
>checking for strerror... yes
>checking for sigfillset... yes
>checking for signal... yes
>checking for system... yes
>checking for getpwuid... yes
>checking for geteuid... yes
>checking for gethostname... yes
>checking for time... yes
>checking for ctime... yes
>checking for setrlimit... yes
>checking for setenv... yes
>checking isnan and iostream... yes
>checking fenv.h usability... yes
>checking fenv.h presence... yes
>checking for fenv.h... yes
>checking for feenableexcept... yes
>checking for fedisableexcept... yes
>checking fchdir... yes
>checking ios::fmtflags... yes
>checking long long... yes
>checking sgetn... yes
>checking pubseekoff... yes
>checking seekoff... no
>checking signal handler needs ellipsis... no
>checking for drand48... yes
>checking for shmget... yes
>checking for semget... yes
>checking sys/ipc.h usability... yes
>checking sys/ipc.h presence... yes
>checking for sys/ipc.h... yes
>checking sys/sem.h usability... yes
>checking sys/sem.h presence... yes
>checking for sys/sem.h... yes
>checking sys/shm.h usability... yes
>checking sys/shm.h presence... yes
>checking for sys/shm.h... yes
>checking for SYSV IPC... yes
>checking if semctl requires semun... no
>checking if fortran compiler works... yes
>checking fortran symbols... lowercase with underscore
>checking for daxpy_... no
>checking for daxpy_ in -lessl... no
>checking for daxpy_ in -lblas... no
>checking for daxpy_ in -lf77blas... yes
>checking for dgesvd_... no
>checking for dgesvd_ in -llapack... no
>Could not link to the LAPACK library.  It can be obtained at
>http://www.netlib.org/lapack.  Use --with-libdirs and/or --with-libs
>to specify the name of the library.
>configure: error: LAPACK is required to complete the build
>RPM build errors:
>error: Bad exit status from /var/tmp/rpm-tmp.YeR5ER (%build)
>    Bad exit status from /var/tmp/rpm-tmp.YeR5ER (%build)
>Child returncode was: 1
>EXCEPTION: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/mpqc.spec']
>Traceback (most recent call last):
>  File "/usr/lib/python2.6/site-packages/mock/trace_decorator.py", line 70, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python2.6/site-packages/mock/util.py", line 324, in do
>    raise mock.exception.Error, ("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>Error: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/mpqc.spec']
>LEAVE do --> EXCEPTION RAISED
>

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Attachments on bug 565030: 393110 | 393111 | 393112 | 393113 | 393114 | 393115