Attachment 419527 Details for Bug 599751 – build.log

build.log

build.log (text/plain), 3.70 KB, created by FTBFS on 2010-06-03 20:19:35 UTC

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Creator: FTBFS

Created: 2010-06-03 20:19:35 UTC

Size: 3.70 KB

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obsolete

>Mock Version: 1.1.1
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/R-BSgenome.spec'], False, '/var/lib/mock/fedora-development-i386-R-BSgenome-1.14.2-1.fc12.src.rpm/root/', None, 25200, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x19e8b50>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/R-BSgenome.spec']
>Building target platforms: i686
>Building for target i686
>Wrote: /builddir/build/SRPMS/R-BSgenome-1.14.2-1.fc14.src.rpm
>Child returncode was: 0
>LEAVE do --> 
>
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R-BSgenome.spec'], False, '/var/lib/mock/fedora-development-i386-R-BSgenome-1.14.2-1.fc12.src.rpm/root/', None, 25200, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x19e8b50>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R-BSgenome.spec']
>Building target platforms: i686
>Building for target i686
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.kwYuZy
>+ umask 022
>+ cd /builddir/build/BUILD
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ cd /builddir/build/BUILD
>+ rm -rf BSgenome
>+ /bin/mkdir -p BSgenome
>+ cd BSgenome
>+ /usr/bin/gzip -dc /builddir/build/SOURCES/BSgenome_1.14.2.tar.gz
>+ /bin/tar -xf -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.jbEoer
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd BSgenome
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ exit 0
>Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.k8SJtj
>+ umask 022
>+ cd /builddir/build/BUILD
>+ '[' /builddir/build/BUILDROOT/R-BSgenome-1.14.2-1.fc14.i386 '!=' / ']'
>+ rm -rf /builddir/build/BUILDROOT/R-BSgenome-1.14.2-1.fc14.i386
>++ dirname /builddir/build/BUILDROOT/R-BSgenome-1.14.2-1.fc14.i386
>+ mkdir -p /builddir/build/BUILDROOT
>+ mkdir /builddir/build/BUILDROOT/R-BSgenome-1.14.2-1.fc14.i386
>+ cd BSgenome
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ rm -rf /builddir/build/BUILDROOT/R-BSgenome-1.14.2-1.fc14.i386
>+ mkdir -p /builddir/build/BUILDROOT/R-BSgenome-1.14.2-1.fc14.i386/usr/share/R/library
>+ R CMD INSTALL BSgenome -l /builddir/build/BUILDROOT/R-BSgenome-1.14.2-1.fc14.i386/usr/share/R/library
>* installing *source* package 'BSgenome' ...
>** R
>** inst
>** preparing package for lazy loading
>Attaching package: 'IRanges'
>The following object(s) are masked from 'package:base':
>    Map, cbind, mapply, order, pmax, pmax.int, pmin, pmin.int, rbind,
>    rep.int, table
>Error in sub("([^-]+)_.*", "\\1", info$pkgname) : 
>  could not find symbol "extended" in environment of the generic function
>Error : unable to load R code in package 'Biostrings'
>Error : package 'Biostrings' could not be loaded
>ERROR: lazy loading failed for package 'BSgenome'
>* removing '/builddir/build/BUILDROOT/R-BSgenome-1.14.2-1.fc14.i386/usr/share/R/library/BSgenome'
>RPM build errors:
>error: Bad exit status from /var/tmp/rpm-tmp.k8SJtj (%install)
>    Bad exit status from /var/tmp/rpm-tmp.k8SJtj (%install)
>Child returncode was: 1
>EXCEPTION: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R-BSgenome.spec']
>Traceback (most recent call last):
>  File "/usr/lib/python2.6/site-packages/mock/trace_decorator.py", line 70, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python2.6/site-packages/mock/util.py", line 333, in do
>    raise mock.exception.Error, ("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>Error: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R-BSgenome.spec']
>LEAVE do --> EXCEPTION RAISED
>

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