Attachment 420053 Details for Bug 599849 – build.log

build.log

build.log (text/plain), 21.70 KB, created by FTBFS on 2010-06-03 20:39:32 UTC

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Creator: FTBFS

Created: 2010-06-03 20:39:32 UTC

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obsolete

>Mock Version: 1.1.1
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/R-IRanges.spec'], False, '/var/lib/mock/fedora-development-i386-R-IRanges-1.4.16-1.fc14.src.rpm/root/', None, 25200, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x1b5ab50>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/R-IRanges.spec']
>Building target platforms: i686
>Building for target i686
>Wrote: /builddir/build/SRPMS/R-IRanges-1.4.16-1.fc14.src.rpm
>Child returncode was: 0
>LEAVE do --> 
>
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R-IRanges.spec'], False, '/var/lib/mock/fedora-development-i386-R-IRanges-1.4.16-1.fc14.src.rpm/root/', None, 25200, True, 0, 8116, 14667, None, logger=<mock.trace_decorator.getLog object at 0x1b5ab50>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R-IRanges.spec']
>Building target platforms: i686
>Building for target i686
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wUJ1L4
>+ umask 022
>+ cd /builddir/build/BUILD
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ cd /builddir/build/BUILD
>+ rm -rf IRanges
>+ /bin/mkdir -p IRanges
>+ cd IRanges
>+ /bin/tar -xf -
>+ /usr/bin/gzip -dc /builddir/build/SOURCES/IRanges_1.4.16.tar.gz
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.vPNjBX
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd IRanges
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ exit 0
>Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.F9wLsQ
>+ umask 022
>+ cd /builddir/build/BUILD
>+ '[' /builddir/build/BUILDROOT/R-IRanges-1.4.16-1.fc14.i386 '!=' / ']'
>+ rm -rf /builddir/build/BUILDROOT/R-IRanges-1.4.16-1.fc14.i386
>++ dirname /builddir/build/BUILDROOT/R-IRanges-1.4.16-1.fc14.i386
>+ mkdir -p /builddir/build/BUILDROOT
>+ mkdir /builddir/build/BUILDROOT/R-IRanges-1.4.16-1.fc14.i386
>+ cd IRanges
>+ LANG=C
>+ export LANG
>+ unset DISPLAY
>+ rm -rf /builddir/build/BUILDROOT/R-IRanges-1.4.16-1.fc14.i386
>+ mkdir -p /builddir/build/BUILDROOT/R-IRanges-1.4.16-1.fc14.i386/usr/lib/R/library
>+ R CMD INSTALL IRanges -l /builddir/build/BUILDROOT/R-IRanges-1.4.16-1.fc14.i386/usr/lib/R/library
>* installing *source* package 'IRanges' ...
>** libs
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c AEbufs.c -o AEbufs.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Grouping_class.c -o Grouping_class.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c IRanges_class.c -o IRanges_class.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c IRanges_constructor.c -o IRanges_constructor.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c IRanges_utils.c -o IRanges_utils.o
>IRanges_utils.c: In function 'IRanges_reduce':
>IRanges_utils.c:74: warning: 'ans_inframe_start' may be used uninitialized in this function
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c IntervalTree.c -o IntervalTree.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
>Ocopy_byteblocks.c: In function 'translate_byte':
>Ocopy_byteblocks.c:20: warning: 'lkup_val' may be used uninitialized in this function
>Ocopy_byteblocks.c: In function '_Ocopy_bytes_from_i1i2_to_complex':
>Ocopy_byteblocks.c:466: warning: 'lkup_val.i' may be used uninitialized in this function
>Ocopy_byteblocks.c:466: warning: 'lkup_val.r' may be used uninitialized in this function
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c R_init_IRanges.c -o R_init_IRanges.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Ranges_comparison.c -o Ranges_comparison.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c RleViews_utils.c -o RleViews_utils.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Rle_class.c -o Rle_class.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Rle_utils.c -o Rle_utils.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c SEXP_utils.c -o SEXP_utils.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Sequence_class.c -o Sequence_class.o
>Sequence_class.c: In function 'vector_seqselect':
>Sequence_class.c:95: warning: implicit declaration of function 'UNIMPLEMENTED_TYPE'
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c SharedDouble_utils.c -o SharedDouble_utils.o
>SharedDouble_utils.c: In function 'SharedDouble_new':
>SharedDouble_utils.c:24: warning: 'tag' may be used uninitialized in this function
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c SharedInteger_utils.c -o SharedInteger_utils.o
>SharedInteger_utils.c: In function 'SharedInteger_new':
>SharedInteger_utils.c:24: warning: 'tag' may be used uninitialized in this function
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c SharedRaw_utils.c -o SharedRaw_utils.o
>SharedRaw_utils.c: In function 'SharedRaw_new':
>SharedRaw_utils.c:24: warning: 'tag' may be used uninitialized in this function
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c SharedVector_class.c -o SharedVector_class.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c XDoubleViews_class.c -o XDoubleViews_class.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c XIntegerViews_class.c -o XIntegerViews_class.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c XIntegerViews_utils.c -o XIntegerViews_utils.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c XVectorList_class.c -o XVectorList_class.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c XVector_class.c -o XVector_class.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chain_io.c -o chain_io.o
>chain_io.c: In function 'read_chain_file':
>chain_io.c:113: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result
>chain_io.c:33: warning: 'tstart' may be used uninitialized in this function
>chain_io.c:33: warning: 'qstart' may be used uninitialized in this function
>chain_io.c:34: warning: 'trc' may be used uninitialized in this function
>chain_io.c:34: warning: 'qrc' may be used uninitialized in this function
>chain_io.c:35: warning: 'block' may be used uninitialized in this function
>chain_io.c:38: warning: 'header_line' may be used uninitialized in this function
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c common.c -o common.o
>common.c: In function 'firstWordInFile':
>common.c:1787: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coverage.c -o coverage.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dlist.c -o dlist.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c errabort.c -o errabort.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c hash.c -o hash.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c localmem.c -o localmem.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c memalloc.c -o memalloc.o
>memalloc.c: In function 'carefulAlloc':
>memalloc.c:289: warning: unused variable 'allocRequest'
>memalloc.c:288: warning: unused variable 'maxAlloc'
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rbTree.c -o rbTree.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sort_utils.c -o sort_utils.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c strutils.c -o strutils.o
>gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c vector_copy.c -o vector_copy.o
>gcc -m32 -std=gnu99 -shared -L/usr/local/lib -o IRanges.so AEbufs.o CompressedIRangesList_class.o Grouping_class.o IRanges_class.o IRanges_constructor.o IRanges_utils.o IntervalTree.o Ocopy_byteblocks.o R_init_IRanges.o Ranges_comparison.o RleViews_utils.o Rle_class.o Rle_utils.o SEXP_utils.o Sequence_class.o SharedDouble_utils.o SharedInteger_utils.o SharedRaw_utils.o SharedVector_class.o XDoubleViews_class.o XIntegerViews_class.o XIntegerViews_utils.o XVectorList_class.o XVector_class.o chain_io.o common.o coverage.o dlist.o errabort.o hash.o localmem.o memalloc.o rbTree.o sort_utils.o strutils.o vector_copy.o -L/usr/lib/R/lib -lR
>installing to /builddir/build/BUILDROOT/R-IRanges-1.4.16-1.fc14.i386/usr/lib/R/library/IRanges/libs
>** R
>** inst
>** preparing package for lazy loading
>Warning: undefined slot classes in definition of "Sequence": elementMetadata(class "DataTableORNULL")
>in method for 'elementMetadata<-' with signature '"Sequence","DataTableORNULL"': no definition for class "DataTableORNULL"
>Warning: undefined slot classes in definition of "Sequence": elementMetadata(class "DataTableORNULL")
>Creating a new generic function for "append" in "IRanges"
>Creating a new generic function for "Filter" in "IRanges"
>Creating a new generic function for "Find" in "IRanges"
>Creating a new generic function for "head" in "IRanges"
>Creating a generic for 'Map' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Signatures differ:  (...), (f))
>Creating a new generic function for "Position" in "IRanges"
>Creating a new generic function for "Reduce" in "IRanges"
>Creating a new generic function for "rev" in "IRanges"
>Creating a new generic function for "subset" in "IRanges"
>Creating a new generic function for "tail" in "IRanges"
>Creating a new generic function for "window" in "IRanges"
>Creating a new generic function for "window<-" in "IRanges"
>Creating a new generic function for "lapply" in "IRanges"
>Creating a new generic function for "sapply" in "IRanges"
>Creating a generic for 'mapply' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Signatures differ:  (...), (FUN, MoreArgs, SIMPLIFY, USE.NAMES))
>Creating a new generic function for "aggregate" in "IRanges"
>Creating a new generic function for "eval" in "IRanges"
>Restoring the implicit generic function for 'with' from package 'base'
>    into package 'IRanges'; the generic differs from the default conversion (Signatures differ:  (data, expr), (data))
>Creating a new generic function for "with" in "IRanges"
>Creating a new generic function for "as.list" in "IRanges"
>Warning: undefined slot classes in definition of "DataTable": elementMetadata(class "DataTableORNULL")
>Creating a generic for 'cbind' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Signatures differ:  (...), (deparse.level))
>Creating a new generic function for "NCOL" in "IRanges"
>Creating a new generic function for "NROW" in "IRanges"
>Creating a generic for 'rbind' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Signatures differ:  (...), (deparse.level))
>in method for 'showAsCell' with signature '"vectorORfactor"': no definition for class "vectorORfactor"
>Creating a new generic function for "xtabs" in "IRanges"
>Creating a new generic function for "start" in "IRanges"
>Creating a new generic function for "end" in "IRanges"
>Creating a new generic function for "update" in "IRanges"
>Creating a new generic function for "as.matrix" in "IRanges"
>Creating a new generic function for "as.data.frame" in "IRanges"
>Creating a new generic function for "unlist" in "IRanges"
>Creating a new generic function for "%in%" in "IRanges"
>Creating a new generic function for "duplicated" in "IRanges"
>Creating a new generic function for "unique" in "IRanges"
>Creating a generic for 'order' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Signatures differ:  (...), (na.last, decreasing))
>Creating a new generic function for "sort" in "IRanges"
>Creating a new generic function for "rank" in "IRanges"
>Creating a new generic function for "union" in "IRanges"
>Creating a new generic function for "intersect" in "IRanges"
>Creating a new generic function for "setdiff" in "IRanges"
>Warning: undefined slot classes in definition of "Binning": bins(class "CompressedIntegerList")
>Warning: undefined slot classes in definition of "Binning": bins(class "CompressedIntegerList")
>Creating a new generic function for "as.vector" in "IRanges"
>Creating a new generic function for "as.factor" in "IRanges"
>Creating a generic for 'rep.int' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Formal arguments differ: (x, ...), (x, times))
>Creating a new generic function for "split" in "IRanges"
>Creating a new generic function for "summary" in "IRanges"
>Creating a generic for 'table' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Formal arguments differ: (...), (..., exclude, useNA, dnn, deparse.level))
>Creating a new generic function for "which" in "IRanges"
>Creating a new generic function for "diff" in "IRanges"
>Creating a generic for 'pmax' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Signatures differ:  (...), (na.rm))
>Creating a generic for 'pmin' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Signatures differ:  (...), (na.rm))
>Creating a generic for 'pmax.int' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Signatures differ:  (...), (na.rm))
>Creating a generic for 'pmin.int' in package 'IRanges'
>    (the supplied definition differs from and overrides the implicit generic
>    in package 'base': Signatures differ:  (...), (na.rm))
>Creating a new generic function for "mean" in "IRanges"
>Creating a new generic function for "var" in "IRanges"
>Creating a new generic function for "cov" in "IRanges"
>Creating a new generic function for "cor" in "IRanges"
>Creating a new generic function for "sd" in "IRanges"
>Creating a new generic function for "median" in "IRanges"
>Creating a new generic function for "quantile" in "IRanges"
>Creating a new generic function for "mad" in "IRanges"
>Creating a new generic function for "IQR" in "IRanges"
>Creating a new generic function for "smoothEnds" in "IRanges"
>Creating a new generic function for "runmed" in "IRanges"
>Creating a new generic function for "nchar" in "IRanges"
>Creating a new generic function for "substr" in "IRanges"
>Creating a new generic function for "substring" in "IRanges"
>Creating a new generic function for "chartr" in "IRanges"
>Creating a new generic function for "tolower" in "IRanges"
>Creating a new generic function for "toupper" in "IRanges"
>Creating a new generic function for "sub" in "IRanges"
>Error in rematchDefinition(definition, fdef, mnames, fnames, signature) : 
>  methods can add arguments to the generic 'sub' only if '...' is an argument to the generic
>Error : unable to load R code in package 'IRanges'
>ERROR: lazy loading failed for package 'IRanges'
>* removing '/builddir/build/BUILDROOT/R-IRanges-1.4.16-1.fc14.i386/usr/lib/R/library/IRanges'
>error: Bad exit status from /var/tmp/rpm-tmp.F9wLsQ (%install)
>    Bad exit status from /var/tmp/rpm-tmp.F9wLsQ (%install)
>RPM build errors:
>Child returncode was: 1
>EXCEPTION: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R-IRanges.spec']
>Traceback (most recent call last):
>  File "/usr/lib/python2.6/site-packages/mock/trace_decorator.py", line 70, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python2.6/site-packages/mock/util.py", line 333, in do
>    raise mock.exception.Error, ("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>Error: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R-IRanges.spec']
>LEAVE do --> EXCEPTION RAISED
>

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Attachments on bug 599849: 420052 | 420053 | 420054 | 420055 | 420056 | 420057