Attachment 623928 Details for Bug 864319 – File: backtrace

File: backtrace

backtrace (text/plain), 148.84 KB, created by piermario on 2012-10-09 06:50:10 UTC

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Creator: piermario

Created: 2012-10-09 06:50:10 UTC

Size: 148.84 KB

patch

obsolete

>warning: core file may not match specified executable file.
>[New LWP 1276]
>[New LWP 1277]
>[New LWP 1279]
>warning: .dynamic section for "/lib/libGLU.so.1" is not at the expected address (wrong library or version mismatch?)
>warning: .dynamic section for "/usr/lib/llvm/libLLVM-3.0.so" is not at the expected address (wrong library or version mismatch?)
>[Thread debugging using libthread_db enabled]
>Using host libthread_db library "/lib/libthread_db.so.1".
>Core was generated by `/usr/bin/python /usr/lib/python2.7/site-packages/pymol/__init__.py'.
>Program terminated with signal 6, Aborted.
>#0  0x00c62416 in __kernel_vsyscall ()
>
>Thread 3 (Thread 0xb607fb40 (LWP 1279)):
>#0  0x00c62416 in __kernel_vsyscall ()
>No symbol table info available.
>#1  0x4426be91 in select () at ../sysdeps/unix/syscall-template.S:82
>No locals.
>#2  0x00ad767f in floatsleep (secs=<optimized out>) at /usr/src/debug/Python-2.7.3/Modules/timemodule.c:943
>        _save = 0x995c270
>        t = {tv_sec = 0, tv_usec = 3539}
>        frac = <optimized out>
>#3  time_sleep (self=0x0, args=(<float at remote 0xb5700e7c>,)) at /usr/src/debug/Python-2.7.3/Modules/timemodule.c:206
>        secs = 0.0055768489837646484
>#4  0x4835401d in PyCFunction_Call (func=func@entry=<built-in function sleep>, arg=arg@entry=(<float at remote 0xb5700e7c>,), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/methodobject.c:116
>        f = 0xb774158c
>        meth = 0xad75a0 <time_sleep>
>        self = 0x0
>        size = <optimized out>
>#5  0x483b30fb in call_function (oparg=<optimized out>, pp_stack=0xb607e254) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4098
>        callargs = (<float at remote 0xb5700e7c>,)
>        flags = 1
>        tstate = <optimized out>
>        func = <built-in function sleep>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 160809584
>        pfunc = 0x992a77c
>        x = <optimized out>
>#6  PyEval_EvalFrameEx (f=f@entry=Frame 0x992a624, for file /usr/lib/python2.7/threading.py, line 262, in wait (self=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c21e0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c21e0>, _Condition__waiters=[<thread.lock at remote 0xb77c22b0>], release=<built-in method release of thread.lock object at remote 0xb77c21e0>) at remote 0xb615b96c>, timeout=<float at remote 0xb5700d8c>, waiter=<thread.lock at remote 0xb77c22b0>, saved_state=None, endtime=<float at remote 0x995b0f4>, delay=<float at remote 0xb5700e7c>, gotit=False, remaining=<float at remote 0xb5700e7c>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x992a780
>        stack_pointer = <optimized out>
>        next_instr = 0x8dd2ccb "\001q\214"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x992a75c
>        freevars = 0x992a77c
>        retval = 0x0
>        tstate = 0x995c270
>        co = 0xb7735d10
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x8dd2be4 "|"
>        names = ('_is_owned', 'RuntimeError', '_allocate_lock', 'acquire', '_Condition__waiters', 'append', '_release_save', 'None', '_note', '_time', 'True', 'min', '_sleep', 'remove', 'ValueError', '_acquire_restore')
>        consts = (None, 'cannot wait on un-acquired lock', '%s.wait(): got it', <float at remote 0x8d472e4>, 0, 2, <float at remote 0x8d472d4>, '%s.wait(%s): timed out', '%s.wait(%s): got it')
>#7  0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0xb7735d10, globals=globals@entry={'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated), locals=locals@entry=0x0, args=0x98e8b4c, argcount=argcount@entry=2, kws=0x98e8b54, kwcount=0, defs=0xb7741c78, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0x992a624, for file /usr/lib/python2.7/threading.py, line 262, in wait (self=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c21e0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c21e0>, _Condition__waiters=[<thread.lock at remote 0xb77c22b0>], release=<built-in method release of thread.lock object at remote 0xb77c21e0>) at remote 0xb615b96c>, timeout=<float at remote 0xb5700d8c>, waiter=<thread.lock at remote 0xb77c22b0>, saved_state=None, endtime=<float at remote 0x995b0f4>, delay=<float at remote 0xb5700e7c>, gotit=False, remaining=<float at remote 0xb5700e7c>)
>        retval = 0x0
>        fastlocals = 0x992a75c
>        freevars = 0x992a77c
>        tstate = 0x995c270
>        x = <optimized out>
>        u = <optimized out>
>#8  0x483b230d in fast_function (nk=<optimized out>, na=2, n=2, pp_stack=0xb607e434, func=<function at remote 0xb773fd14>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = 0xb7735d10
>        nd = 1
>        globals = {'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated)
>        argdefs = <optimized out>
>        d = <optimized out>
>#9  call_function (oparg=<optimized out>, pp_stack=0xb607e434) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0xb773fd14>
>        w = <optimized out>
>        na = 2
>        nk = <optimized out>
>        n = 2
>        pfunc = 0x98e8b4c
>        x = <optimized out>
>#10 PyEval_EvalFrameEx (f=f@entry=Frame 0x98e8a0c, for file /usr/lib/python2.7/threading.py, line 403, in wait (self=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c21e0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c21e0>, _Condition__waiters=[<thread.lock at remote 0xb77c22b0>], release=<built-in method release of thread.lock object at remote 0xb77c21e0>) at remote 0xb615b96c>) at remote 0xb61686cc>, timeout=<float at remote 0xb5700d8c>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x98e8b54
>        stack_pointer = <optimized out>
>        next_instr = 0xb77207dc "\001n"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x2>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x98e8b44
>        freevars = 0x98e8b4c
>        retval = 0x0
>        tstate = 0x995c270
>        co = 0xb773b380
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0xb77207b4 "|"
>        names = ('_Event__cond', 'acquire', '_Event__flag', 'wait', 'release')
>        consts = (None,)
>#11 0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0xb773b380, globals=globals@entry={'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated), locals=locals@entry=0x0, args=0xb6205618, argcount=argcount@entry=2, kws=0xb6205620, kwcount=0, defs=0xb7741d18, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0x98e8a0c, for file /usr/lib/python2.7/threading.py, line 403, in wait (self=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c21e0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c21e0>, _Condition__waiters=[<thread.lock at remote 0xb77c22b0>], release=<built-in method release of thread.lock object at remote 0xb77c21e0>) at remote 0xb615b96c>) at remote 0xb61686cc>, timeout=<float at remote 0xb5700d8c>)
>        retval = 0x0
>        fastlocals = 0x98e8b44
>        freevars = 0x98e8b4c
>        tstate = 0x995c270
>        x = <optimized out>
>        u = <optimized out>
>#12 0x483b230d in fast_function (nk=<optimized out>, na=2, n=2, pp_stack=0xb607e614, func=<function at remote 0xb7743144>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = 0xb773b380
>        nd = 1
>        globals = {'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated)
>        argdefs = <optimized out>
>        d = <optimized out>
>#13 call_function (oparg=<optimized out>, pp_stack=0xb607e614) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0xb7743144>
>        w = <optimized out>
>        na = 2
>        nk = <optimized out>
>        n = 2
>        pfunc = 0xb6205618
>        x = <optimized out>
>#14 PyEval_EvalFrameEx (f=f@entry=Frame 0xb62054d4, for file /usr/lib/python2.7/site-packages/pymol/locking.py, line 54, in lock (_self=<module at remote 0xb748ebfc>, w=<float at remote 0xb5700d8c>, e=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c21e0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c21e0>, _Condition__waiters=[<thread.lock at remote 0xb77c22b0>], release=<built-in method release of thread.lock object at remote 0xb77c21e0>) at remote 0xb615b96c>) at remote 0xb61686cc>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0xb6205620
>        stack_pointer = <optimized out>
>        next_instr = 0x8e49067 "\001~\002"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x2>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb620560c
>        freevars = 0xb6205618
>        retval = 0x0
>        tstate = 0x995c270
>        co = 0x8e480f8
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x8e49034 "|"
>        names = ('lock_api', 'acquire', 'threading', 'Event', 'wait')
>        consts = (None, 0, <float at remote 0x8df2f04>, <float at remote 0x8df2ef4>, 2, 1)
>#15 0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0x8e480f8, globals=globals@entry={'unlock_c': <function at remote 0x8e32924>, 'lock': <function at remote 0x8e32b1c>, 'lock_attempt': <function at remote 0x8e32b54>, 'unlock_glut': <function at remote 0x8e32aac>, 'lock_without_glut': <function at remote 0x8e32ae4>, 'unlock': <function at remote 0x8e32bfc>, 'fb_action': <classobj at remote 0xb74c4e3c>, 'lock_data': <function at remote 0x8e3295c>, 'is_glut_thread': <function at remote 0x8e32c34>, 'lock_glut': <function at remote 0x8e32a74>, 'setup_global_locks': <function at remote 0x8e32c6c>, '_cmd': <module at remote 0xb748eaac>, '__package__': 'pymol', 'lock_status': <function at remote 0x8e32a04>, 'block_flush': <function at remote 0x8e32b8c>, '__doc__': None, 'unlock_status': <function at remote 0x8e32a3c>, '__builtins__': {'bytearray': <type at remote 0x4844d7a0>, 'IndexError': <type at remote 0x484515a0>, 'all': <built-in function all>, 'help': <_Helper at remote 0xb771812c>, 'vars': <built-in function vars>, 'SyntaxError': <type at remote 0x48451220>, 'unicode': <type at remote 0x48461...(truncated), locals=locals@entry=0x0, args=0x992ecb8, argcount=argcount@entry=1, kws=0x992ecbc, kwcount=0, defs=0x8e46f98, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0xb62054d4, for file /usr/lib/python2.7/site-packages/pymol/locking.py, line 54, in lock (_self=<module at remote 0xb748ebfc>, w=<float at remote 0xb5700d8c>, e=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c21e0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c21e0>, _Condition__waiters=[<thread.lock at remote 0xb77c22b0>], release=<built-in method release of thread.lock object at remote 0xb77c21e0>) at remote 0xb615b96c>) at remote 0xb61686cc>)
>        retval = 0x0
>        fastlocals = 0xb620560c
>        freevars = 0xb6205618
>        tstate = 0x995c270
>        x = <optimized out>
>        u = <optimized out>
>#16 0x483b230d in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0xb607e7f4, func=<function at remote 0x8e32b1c>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = 0x8e480f8
>        nd = 1
>        globals = {'unlock_c': <function at remote 0x8e32924>, 'lock': <function at remote 0x8e32b1c>, 'lock_attempt': <function at remote 0x8e32b54>, 'unlock_glut': <function at remote 0x8e32aac>, 'lock_without_glut': <function at remote 0x8e32ae4>, 'unlock': <function at remote 0x8e32bfc>, 'fb_action': <classobj at remote 0xb74c4e3c>, 'lock_data': <function at remote 0x8e3295c>, 'is_glut_thread': <function at remote 0x8e32c34>, 'lock_glut': <function at remote 0x8e32a74>, 'setup_global_locks': <function at remote 0x8e32c6c>, '_cmd': <module at remote 0xb748eaac>, '__package__': 'pymol', 'lock_status': <function at remote 0x8e32a04>, 'block_flush': <function at remote 0x8e32b8c>, '__doc__': None, 'unlock_status': <function at remote 0x8e32a3c>, '__builtins__': {'bytearray': <type at remote 0x4844d7a0>, 'IndexError': <type at remote 0x484515a0>, 'all': <built-in function all>, 'help': <_Helper at remote 0xb771812c>, 'vars': <built-in function vars>, 'SyntaxError': <type at remote 0x48451220>, 'unicode': <type at remote 0x48461...(truncated)
>        argdefs = <optimized out>
>        d = <optimized out>
>#17 call_function (oparg=<optimized out>, pp_stack=0xb607e7f4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x8e32b1c>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0x992ecb4
>        x = <optimized out>
>#18 PyEval_EvalFrameEx (f=f@entry=Frame 0x992eb44, for file /usr/lib/python2.7/site-packages/pymol/setting.py, line 1043, in set (name='suspend_updates', value=1, selection='', state=0, updates=1, log=0, quiet=1, _self=<module at remote 0xb748ebfc>, r=-1, index=141), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x992ecbc
>        stack_pointer = <optimized out>
>        next_instr = 0x8d698a4 "\001t\t"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x992ec7c
>        freevars = 0x992ecb4
>        retval = 0x0
>        tstate = 0x995c270
>        co = 0x8ea9188
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x8d697bc "t"
>        names = ('DEFAULT_ERROR', 'str', 'cmd', 'safe_list_eval', 'len', 'log', '_get_index', 'QuietException', 'lock', '_cmd', 'get_setting_tuple', '_COb', 'int', 'None', 'boolean_sc', 'interpret', 'float', 'boolean_dict', 'auto_err', 'has_key', 'is_string', 'string', 'split', 'eval', 'quote_strip_re', 'search', 'selector', 'process', 'set', 'traceback', 'print_exc', '_feedback', 'fb_module', 'fb_mask', 'debugging', 'unlock', '_raising')
>        consts = ('\nDESCRIPTION\n\n    "set" changes global, object, object-state, or per-atom settings.\n\nUSAGE\n\n    set name [,value [,selection [,state ]]]\n\nARGUMENTS\n\n    name = string: setting name\n\n    value = string: a setting value {default: 1}\n\n    selection = string: name-pattern or selection-expression\n    {default:\'\' (global)}\n\n    state = a state number {default: 0 (per-object setting)}\n\nEXAMPLES\n\n    set orthoscopic\n\n    set line_width, 3\n\n    set surface_color, white, 1hpv\n    \n    set sphere_scale, 0.5, elem C\n\nNOTES\n\n    The default behavior (with a blank selection) is global.  If the\n    selection is "all", then the setting entry in each individual\n    object will be changed.  Likewise, for a given object, if state is\n    zero, then the object setting will be modified.  Otherwise, the\n    setting for the indicated state within the object will be\n    modified.\n\n    If a selection is provided as opposed to an object name, then the\n    atomic setting entries are modified.\...(truncated)
>#19 0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0x8ea9188, globals=globals@entry={'is_ok': <function at remote 0x8e3280c>, 'traceback': <module at remote 0xb7791a1c>, 'setting_sc': <Shortcut(keywords=['line_color', 'auto_remove_hydrogens', 'dot_hydrogens', 'animation_duration', 'h_bond_power_a', 'stereo_double_pump_mono', 'h_bond_power_b', 'roving_lines', 'cartoon_refine', 'stick_h_scale', 'roving_detail', 'pymol_space_max_blue', 'sculpt_vdw_scale', 'dash_as_cylinders', 'cartoon_nucleic_acid_mode', 'sculpt_nb_interval', 'valence_default', 'bg_rgb_top', 'ray_default_renderer', 'sculpt_tors_tolerance', 'pdb_hetatm_sort', 'ribbon_throw', 'anaglyph_mode', 'spec_direct_power', 'cgo_shader_ub_normal', 'roving_polar_cutoff', 'single_image', 'default_buster_names', 'triangle_max_passes', 'seq_view_fill_color', 'debug_pick', 'ss_helix_phi_include', 'roving_delay', 'backface_cull', 'nb_spheres_size', 'ray_shadow_fudge', 'ray_orthoscopic', 'sculpt_hb_overlap_base', 'sweep_speed', 'direct', 'mesh_skip', 'sculpt_vdw_vis_max', 'spheroid_smooth', 'mouse_grid', 'surface_clear_selection', 'sculpt_vdw_vis_...(truncated), locals=locals@entry=0x0, args=0xb5700a30, argcount=argcount@entry=2, kws=0xb5700a38, kwcount=1, defs=0x8efd578, defcount=defcount@entry=7, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0x992eb44, for file /usr/lib/python2.7/site-packages/pymol/setting.py, line 1043, in set (name='suspend_updates', value=1, selection='', state=0, updates=1, log=0, quiet=1, _self=<module at remote 0xb748ebfc>, r=-1, index=141)
>        retval = 0x0
>        fastlocals = 0x992ec7c
>        freevars = 0x992ecb4
>        tstate = 0x995c270
>        x = <optimized out>
>        u = <optimized out>
>#20 0x483b230d in fast_function (nk=<optimized out>, na=2, n=4, pp_stack=0xb607e9d4, func=<function at remote 0x8efd534>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = 0x8ea9188
>        nd = 7
>        globals = {'is_ok': <function at remote 0x8e3280c>, 'traceback': <module at remote 0xb7791a1c>, 'setting_sc': <Shortcut(keywords=['line_color', 'auto_remove_hydrogens', 'dot_hydrogens', 'animation_duration', 'h_bond_power_a', 'stereo_double_pump_mono', 'h_bond_power_b', 'roving_lines', 'cartoon_refine', 'stick_h_scale', 'roving_detail', 'pymol_space_max_blue', 'sculpt_vdw_scale', 'dash_as_cylinders', 'cartoon_nucleic_acid_mode', 'sculpt_nb_interval', 'valence_default', 'bg_rgb_top', 'ray_default_renderer', 'sculpt_tors_tolerance', 'pdb_hetatm_sort', 'ribbon_throw', 'anaglyph_mode', 'spec_direct_power', 'cgo_shader_ub_normal', 'roving_polar_cutoff', 'single_image', 'default_buster_names', 'triangle_max_passes', 'seq_view_fill_color', 'debug_pick', 'ss_helix_phi_include', 'roving_delay', 'backface_cull', 'nb_spheres_size', 'ray_shadow_fudge', 'ray_orthoscopic', 'sculpt_hb_overlap_base', 'sweep_speed', 'direct', 'mesh_skip', 'sculpt_vdw_vis_max', 'spheroid_smooth', 'mouse_grid', 'surface_clear_selection', 'sculpt_vdw_vis_...(truncated)
>        argdefs = <optimized out>
>        d = <optimized out>
>#21 call_function (oparg=<optimized out>, pp_stack=0xb607e9d4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x8efd534>
>        w = <optimized out>
>        na = 2
>        nk = <optimized out>
>        n = 4
>        pfunc = 0xb5700a2c
>        x = <optimized out>
>#22 PyEval_EvalFrameEx (f=f@entry=Frame 0xb57008e4, for file /usr/lib/python2.7/site-packages/pymol/wizard/demo.py, line 265, in anime (self=<DemoInfo(cmd=<module at remote 0xb748ebfc>) at remote 0xb61617ec>, cleanup=0, a=1), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0xb5700a40
>        stack_pointer = <optimized out>
>        next_instr = 0x9945599 "\001|"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x2>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb5700a1c
>        freevars = 0xb5700a28
>        retval = 0x0
>        tstate = 0x995c270
>        co = 0xb615c3c8
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x99453a4 "|\001"
>        names = ('cmd', 'set', 'disable', 'load', 'util', 'chainbow', 'hide', 'show', 'create', 'cbay', 'delete', 'set_view', 'translate', 'zoom', 'refresh', 'range', 'turn', 'move')
>        consts = (None, 'suspend_updates', 1, 'quiet', '$TUT/1hpv.pdb', '1hpv', '_self', 'everything', 'cartoon', 'sticks', '1hpv///200/', '1hpv_a', '1hpv//A//', 'cartoon_smooth_loops', 0, '1hpv_b', '1hpv//B//', '1hpv_l', <float at remote 0xb612dba4>, <float at remote 0x9945d34>, <float at remote 0x9945d24>, <float at remote 0x9945d14>, <float at remote 0x9945d04>, <float at remote 0x9945cf4>, <float at remote 0x9945ce4>, <float at remote 0x9945cd4>, <float at remote 0x9945cc4>, <float at remote 0x9945cb4>, <float at remote 0x9945ca4>, <float at remote 0x9945c94>, <float at remote 0x9945c84>, <float at remote 0x9945c74>, <float at remote 0x9945c64>, <float at remote 0x9945c54>, <float at remote 0x9945c44>, <float at remote 0x9945c34>, -20, 'object', 20, 'center', 30, 10, 21, -1, <float at remote 0x9945c24>, 62, 'y', 6, 'z', 2, <float at remote 0x9945c14>, '1hpv_*', (<float at remote 0x9945c04>, <float at remote 0x9945bf4>, <float at remote 0x9945be4>, <float at remote 0x9945bd4>, <float at remote 0x9945bc4>, <float at remote ...(truncated)
>#23 0x483b4049 in PyEval_EvalCodeEx (co=0xb615c3c8, globals={'CYLINDER': <float at remote 0x995b294>, 'ENABLE': <float at remote 0x995b264>, 'TRIANGLE': <float at remote 0x995b2a4>, 'NORMAL': <float at remote 0x995b2d4>, 'Wizard': <classobj at remote 0xb677465c>, 'STOP': <float at remote 0x9946adc>, 'LINE_LOOP': <float at remote 0x9946abc>, 'CHAR': <float at remote 0x995b1b4>, 'TRIANGLE_FAN': <float at remote 0x995b2c4>, 'CONE': <float at remote 0x995b184>, 'DemoInfo': <classobj at remote 0xb614dcbc>, 'NULL': <float at remote 0x9946acc>, 'saved': {'last': 'anime'}, 'ALPHA_TRIANGLE': <float at remote 0x995b214>, 'molauto': <function at remote 0xb61526f4>, 'BEGIN': <float at remote 0x9946abc>, 'FONT': <float at remote 0x995b1f4>, 'DEFAULT_SUCCESS': None, 'wire_text': <function at remote 0xb6152764>, 'LINE_STRIP': <float at remote 0x9946a9c>, 'COLOR': <float at remote 0x995b2c4>, 'FONT_VERTEX': <float at remote 0x995b1d4>, '__package__': 'pymol.wizard', 'CUSTOM_CYLINDER': <float at remote 0x995b234>, 'DISABLE': <float at remote 0x995b254>, 'cyl_text': <function at remote...(truncated), locals=locals@entry=0x0, args=args@entry=0xb615b718, argcount=1, kws=kws@entry=0xb7791038, kwcount=kwcount@entry=0, defs=defs@entry=0xb615b4d8, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0xb57008e4, for file /usr/lib/python2.7/site-packages/pymol/wizard/demo.py, line 265, in anime (self=<DemoInfo(cmd=<module at remote 0xb748ebfc>) at remote 0xb61617ec>, cleanup=0, a=1)
>        retval = 0x0
>        fastlocals = 0xb5700a1c
>        freevars = 0xb5700a28
>        tstate = 0x995c270
>        x = <optimized out>
>        u = <optimized out>
>#24 0x4833e990 in function_call (func=<function at remote 0xb6152c34>, arg=(<DemoInfo(cmd=<module at remote 0xb748ebfc>) at remote 0xb61617ec>,), kw={}) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = ()
>        d = 0xb615b4d8
>        k = 0xb7791038
>        nk = <optimized out>
>        nd = 1
>#25 0x483178e1 in PyObject_Call (func=func@entry=<function at remote 0xb6152c34>, arg=arg@entry=(<DemoInfo(cmd=<module at remote 0xb748ebfc>) at remote 0xb61617ec>,), kw=kw@entry={}) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x4833e7e0 <function_call>
>#26 0x483afe7a in ext_do_call (nk=-1240090868, na=1, flags=<optimized out>, pp_stack=0xb607ec64, func=<function at remote 0xb6152c34>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4411
>        kwdict = {}
>        nstar = <optimized out>
>        callargs = <optimized out>
>        stararg = ()
>        result = 0x0
>#27 PyEval_EvalFrameEx (f=Frame 0xb5700784, for file /usr/lib/python2.7/threading.py, line 504, in run (self=<Thread(_Thread__ident=-1240990912, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2200>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2200>) at remote 0xb61618ec>, _Thread__name='Thread-2', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2250>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2250>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2250>) at remote 0xb616186c>) at remote 0xb616184c>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<instancemethod at remote 0xb614cfcc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thre...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2779
>        flags = <optimized out>
>        func = <function at remote 0xb6152c34>
>        na = 1
>        nk = -1240090868
>        n = <optimized out>
>        pfunc = 0xb57008c0
>        sp = 0xb57008c0
>        stack_pointer = <optimized out>
>        next_instr = 0xb771f5d5 "\001n"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb57008bc
>        freevars = 0xb57008c0
>        retval = 0x0
>        tstate = 0x995c270
>        co = 0xb773b698
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0xb771f5b4 "z&"
>        names = ('_Thread__target', '_Thread__args', '_Thread__kwargs')
>        consts = (None,)
>#28 0x483b27ec in fast_function (nk=160809584, na=1, n=1, pp_stack=0xb607edd4, func=<function at remote 0xb7743304>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4184
>        retval = 0x0
>        i = <optimized out>
>        fastlocals = <optimized out>
>        f = <optimized out>
>        tstate = 0x995c270
>        stack = <optimized out>
>        co = <optimized out>
>        nd = 0
>        globals = {'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated)
>        argdefs = <optimized out>
>        d = 0x0
>#29 call_function (oparg=<optimized out>, pp_stack=0xb607edd4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0xb7743304>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0xb5700734
>        x = <optimized out>
>#30 PyEval_EvalFrameEx (f=Frame 0xb57005ec, for file /usr/lib/python2.7/threading.py, line 551, in __bootstrap_inner (self=<Thread(_Thread__ident=-1240990912, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2200>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2200>) at remote 0xb61618ec>, _Thread__name='Thread-2', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2250>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2250>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2250>) at remote 0xb616186c>) at remote 0xb616184c>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<instancemethod at remote 0xb614cfcc>, _Thread__kwargs={}, _Verbose__verbos...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0xb5700738
>        stack_pointer = <optimized out>
>        next_instr = 0x8dd1822 "\001Wn\a\001\004t\016"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb5700724
>        freevars = 0xb5700734
>        retval = 0x0
>        tstate = 0x995c270
>        co = 0xb773b7b8
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x8dd177c "z\322\001|"
>        names = ('_set_ident', '_Thread__started', 'set', '_active_limbo_lock', '_active', '_Thread__ident', '_limbo', '_note', '_trace_hook', '_sys', 'settrace', '_profile_hook', 'setprofile', 'run', 'SystemExit', 'stderr', 'write', 'name', '_format_exc', '_Thread__exc_info', '_Thread__stderr', 'tb_frame', 'f_code', 'co_filename', 'tb_lineno', 'co_name', 'tb_next', '_Thread__exc_clear', '_Thread__stop', '_get_ident')
>        consts = (None, '%s.__bootstrap(): thread started', '%s.__bootstrap(): registering trace hook', '%s.__bootstrap(): registering profile hook', '%s.__bootstrap(): raised SystemExit', '%s.__bootstrap(): unhandled exception', 'Exception in thread %s:\n%s\n', 'Exception in thread ', ' (most likely raised during interpreter shutdown):', 'Traceback (most recent call last):', '  File "%s", line %s, in %s', '%s: %s', '%s.__bootstrap(): normal return')
>#31 0x483b27ec in fast_function (nk=160809584, na=1, n=1, pp_stack=0xb607ef44, func=<function at remote 0xb77433ac>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4184
>        retval = 0x0
>        i = <optimized out>
>        fastlocals = <optimized out>
>        f = <optimized out>
>        tstate = 0x995c270
>        stack = <optimized out>
>        co = <optimized out>
>        nd = 0
>        globals = {'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated)
>        argdefs = <optimized out>
>        d = 0x0
>#32 call_function (oparg=<optimized out>, pp_stack=0xb607ef44) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0xb77433ac>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0xb57005c8
>        x = <optimized out>
>#33 PyEval_EvalFrameEx (f=f@entry=Frame 0xb570048c, for file /usr/lib/python2.7/threading.py, line 524, in __bootstrap (self=<Thread(_Thread__ident=-1240990912, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2200>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2200>) at remote 0xb61618ec>, _Thread__name='Thread-2', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2250>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2250>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2250>) at remote 0xb616186c>) at remote 0xb616184c>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<instancemethod at remote 0xb614cfcc>, _Thread__kwargs={}, _Verbose__verbose=Fals...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0xb57005cc
>        stack_pointer = <optimized out>
>        next_instr = 0xb771b2c0 "\001Wn#"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb57005c4
>        freevars = 0xb57005c8
>        retval = 0x0
>        tstate = 0x995c270
>        co = 0xb773b6e0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0xb771b2b4 "y\016"
>        names = ('_Thread__bootstrap_inner', '_Thread__daemonic', '_sys', 'None')
>        consts = (None,)
>#34 0x483b4049 in PyEval_EvalCodeEx (co=0xb773b6e0, globals={'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated), locals=locals@entry=0x0, args=args@entry=0xb615b9b8, argcount=1, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0xb570048c, for file /usr/lib/python2.7/threading.py, line 524, in __bootstrap (self=<Thread(_Thread__ident=-1240990912, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2200>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2200>) at remote 0xb61618ec>, _Thread__name='Thread-2', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2250>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2250>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2250>) at remote 0xb616186c>) at remote 0xb616184c>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<instancemethod at remote 0xb614cfcc>, _Thread__kwargs={}, _Verbose__verbose=Fals...(truncated)
>        retval = 0x0
>        fastlocals = 0xb57005c4
>        freevars = 0xb57005c8
>        tstate = 0x995c270
>        x = <optimized out>
>        u = <optimized out>
>#35 0x4833e891 in function_call (func=<function at remote 0xb774333c>, arg=(<Thread(_Thread__ident=-1240990912, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2200>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2200>) at remote 0xb61618ec>, _Thread__name='Thread-2', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2250>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2250>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2250>) at remote 0xb616186c>) at remote 0xb616184c>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<instancemethod at remote 0xb614cfcc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(), _Thread__stopped=False, _Thread__initialized=True) at remote 0xb61618...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = 0x0
>        d = 0x0
>        k = 0x0
>        nk = 0
>        nd = 0
>#36 0x483178e1 in PyObject_Call (func=func@entry=<function at remote 0xb774333c>, arg=arg@entry=(<Thread(_Thread__ident=-1240990912, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2200>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2200>) at remote 0xb61618ec>, _Thread__name='Thread-2', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2250>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2250>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2250>) at remote 0xb616186c>) at remote 0xb616184c>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<instancemethod at remote 0xb614cfcc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(), _Thread__stopped=False, _Thread__initialized=True) at remote 0xb61618...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x4833e7e0 <function_call>
>#37 0x483271dc in instancemethod_call (func=<function at remote 0xb774333c>, arg=(<Thread(_Thread__ident=-1240990912, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2200>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2200>) at remote 0xb61618ec>, _Thread__name='Thread-2', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2250>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2250>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2250>) at remote 0xb616186c>) at remote 0xb616184c>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<instancemethod at remote 0xb614cfcc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(), _Thread__stopped=False, _Thread__initialized=True) at remote 0xb61618...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/classobject.c:2578
>        self = <optimized out>
>        klass = <optimized out>
>        result = <optimized out>
>#38 0x483178e1 in PyObject_Call (func=func@entry=<instancemethod at remote 0xb614cf7c>, arg=arg@entry=(), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x48327120 <instancemethod_call>
>#39 0x483ace0c in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0xb614cf7c>, arg=(), kw=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3967
>        result = <optimized out>
>#40 0x483e30b1 in t_bootstrap (boot_raw=0x97624a8) at /usr/src/debug/Python-2.7.3/Modules/threadmodule.c:614
>        boot = 0x97624a8
>        tstate = 0x995c270
>        res = <optimized out>
>#41 0x4436dadf in start_thread (arg=0xb607fb40) at pthread_create.c:309
>        __res = <optimized out>
>        pd = 0xb607fb40
>        now = <optimized out>
>        unwind_buf = {cancel_jmp_buf = {{jmp_buf = {1144512500, 0, 4001536, -1240992664, 2124817435, 485782527}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}}
>        not_first_call = 0
>        pagesize_m1 = <optimized out>
>        sp = <optimized out>
>        freesize = <optimized out>
>#42 0x442733ce in clone () at ../sysdeps/unix/sysv/linux/i386/clone.S:133
>No locals.
>
>Thread 2 (Thread 0xb723fb40 (LWP 1277)):
>#0  0x00c62416 in __kernel_vsyscall ()
>No symbol table info available.
>#1  0x4426be91 in select () at ../sysdeps/unix/syscall-template.S:82
>No locals.
>#2  0x004ab1c5 in Sleep (milli=<optimized out>) at /usr/src/debug/Python-2.7.3/Modules/_tkinter.c:313
>        t = {tv_sec = 0, tv_usec = 13882}
>#3  0x004ab3fb in Tkapp_MainLoop (selfptr=<tkapp at remote 0x99d5410>, args=(0,)) at /usr/src/debug/Python-2.7.3/Modules/_tkinter.c:2649
>        _save = 0x9879df0
>        result = 0
>        threshold = 0
>        self = 0x99d5410
>        tstate = 0x9879df0
>#4  0x4835401d in PyCFunction_Call (func=func@entry=<built-in method mainloop of tkapp object at remote 0x99d5410>, arg=arg@entry=(0,), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/methodobject.c:116
>        f = 0xb631138c
>        meth = 0x4ab1d0 <Tkapp_MainLoop>
>        self = <tkapp at remote 0x99d5410>
>        size = <optimized out>
>#5  0x483b30fb in call_function (oparg=<optimized out>, pp_stack=0xb723e614) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4098
>        callargs = (0,)
>        flags = 1
>        tstate = <optimized out>
>        func = <built-in method mainloop of tkapp object at remote 0x99d5410>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 159882736
>        pfunc = 0xb61974f4
>        x = <optimized out>
>#6  PyEval_EvalFrameEx (f=f@entry=Frame 0xb61973b4, for file /usr/lib/python2.7/lib-tk/Tkinter.py, line 1017, in mainloop (self=<Tk(_tclCommands=['tkerror', 'exit', '161031948destroy', '3054815548L<lambda>', '3054829652Lcallit'], master=None, children={'3057425548L': <Frame(widgetName='frame', _w='.3057425548L', _tclCommands=[], _name='3057425548L', master=<...>, tk=<tkapp at remote 0x99d5410>, children={}) at remote 0xb63c9c8c>, '3061605100L': <Frame(widgetName='frame', _w='.3061605100L', _tclCommands=[], _name='3061605100L', master=<...>, tk=<tkapp at remote 0x99d5410>, children={'3056685484L': <Menubutton(widgetName='menubutton', _w='.3061605100L.3056685484L', _tclCommands=['3061614588L<lambda>', '3056649196L<lambda>', '3056649436L_leave', '3056649556L_buttonpress', '3056649676L_destroy'], _name='3056685484L', _Pmw_BalloonBindIds={None: ('3061614588L<lambda>', '3056649196L<lambda>', '3056649436L_leave', '3056649556L_buttonpress', '3056649676L_destroy')}, master=<...>, tk=<tkapp at remote 0x99d5410>, children={'3056685868L': <Menu(widgetNam...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0xb61974f8
>        stack_pointer = <optimized out>
>        next_instr = 0x97c8f13 "\001d\001"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb61974ec
>        freevars = 0xb61974f4
>        retval = 0x0
>        tstate = 0x9879df0
>        co = 0x97dd2f0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x97c8f04 "|"
>        names = ('tk', 'mainloop')
>        consts = ('Call the mainloop of Tk.', None)
>#7  0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0x97dd2f0, globals=globals@entry={'getdouble': <type at remote 0x48454d60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4845de00>, 'mainloop': <function at remote 0x9986994>, 'Canvas': <classobj at remote 0x998b4dc>, 'AtSelLast': <function at remote 0x9991d14>, 'CodeType': <type at remote 0x4844e920>, 'TRUE': 1, 'AtSelFirst': <function at remote 0x9991cdc>, 'getboolean': <function at remote 0x9986dbc>, 'LAST': 'last', 'BASELINE': 'baseline', 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0x998b2fc>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0x998b47c>, 'DictProxyType': <type at remote 0x4844f360>, '_setit': <classobj at remote 0x998b74c>, 'Pack': <classobj at remote 0x998b38c>, 'ObjectType': <type at remote 0x4845dd20>, 'DictType': <type at remote 0x484586a0>, 'EXTENDED': 'extended', 'OFF': 0, '__file__': '/usr/lib/python2.7/lib-tk/Tkinter.pyc', 'ALL': 'all', 'NoDefaultRoot': <function at remote 0x99868ec>, 'CURRENT': 'current', 'CallWrapper': <classobj at remote 0x99cccbc>, 'Scrollbar': <classobj at remote 0x998b6ec>, '...(truncated), locals=locals@entry=0x0, args=0xb6196f7c, argcount=argcount@entry=1, kws=0xb6196f80, kwcount=0, defs=0x998d498, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0xb61973b4, for file /usr/lib/python2.7/lib-tk/Tkinter.py, line 1017, in mainloop (self=<Tk(_tclCommands=['tkerror', 'exit', '161031948destroy', '3054815548L<lambda>', '3054829652Lcallit'], master=None, children={'3057425548L': <Frame(widgetName='frame', _w='.3057425548L', _tclCommands=[], _name='3057425548L', master=<...>, tk=<tkapp at remote 0x99d5410>, children={}) at remote 0xb63c9c8c>, '3061605100L': <Frame(widgetName='frame', _w='.3061605100L', _tclCommands=[], _name='3061605100L', master=<...>, tk=<tkapp at remote 0x99d5410>, children={'3056685484L': <Menubutton(widgetName='menubutton', _w='.3061605100L.3056685484L', _tclCommands=['3061614588L<lambda>', '3056649196L<lambda>', '3056649436L_leave', '3056649556L_buttonpress', '3056649676L_destroy'], _name='3056685484L', _Pmw_BalloonBindIds={None: ('3061614588L<lambda>', '3056649196L<lambda>', '3056649436L_leave', '3056649556L_buttonpress', '3056649676L_destroy')}, master=<...>, tk=<tkapp at remote 0x99d5410>, children={'3056685868L': <Menu(widgetNam...(truncated)
>        retval = 0x0
>        fastlocals = 0xb61974ec
>        freevars = 0xb61974f4
>        tstate = 0x9879df0
>        x = <optimized out>
>        u = <optimized out>
>#8  0x483b230d in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0xb723e7f4, func=<function at remote 0x99905dc>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = 0x97dd2f0
>        nd = 1
>        globals = {'getdouble': <type at remote 0x48454d60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4845de00>, 'mainloop': <function at remote 0x9986994>, 'Canvas': <classobj at remote 0x998b4dc>, 'AtSelLast': <function at remote 0x9991d14>, 'CodeType': <type at remote 0x4844e920>, 'TRUE': 1, 'AtSelFirst': <function at remote 0x9991cdc>, 'getboolean': <function at remote 0x9986dbc>, 'LAST': 'last', 'BASELINE': 'baseline', 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0x998b2fc>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0x998b47c>, 'DictProxyType': <type at remote 0x4844f360>, '_setit': <classobj at remote 0x998b74c>, 'Pack': <classobj at remote 0x998b38c>, 'ObjectType': <type at remote 0x4845dd20>, 'DictType': <type at remote 0x484586a0>, 'EXTENDED': 'extended', 'OFF': 0, '__file__': '/usr/lib/python2.7/lib-tk/Tkinter.pyc', 'ALL': 'all', 'NoDefaultRoot': <function at remote 0x99868ec>, 'CURRENT': 'current', 'CallWrapper': <classobj at remote 0x99cccbc>, 'Scrollbar': <classobj at remote 0x998b6ec>, '...(truncated)
>        argdefs = <optimized out>
>        d = <optimized out>
>#9  call_function (oparg=<optimized out>, pp_stack=0xb723e7f4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x99905dc>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0xb6196f7c
>        x = <optimized out>
>#10 PyEval_EvalFrameEx (f=f@entry=Frame 0xb6196e34, for file /usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py, line 179, in run (self=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), skinNameList=['normal'], _MegaArchetype__componentInfo={'row1': (<Frame(widgetName='frame', _w='.161335820.3057331532L.3057425676L', _tclCommands=[], _name='3057425676L', master=<Frame(widgetName='frame', _w='.161335820.3057331532L', _tclCommands=[], _name='3057331532L', master=<Frame(widgetName='frame', _w='.161335820', _tclCommands=[], _name='161335820', master=<Tk(_tclCommands=['tkerror', 'exit', '161031948destroy', '3054815548L<lambda>', '3054829652Lcallit'], master=None, children={'3057425548L': <Frame(widgetName='frame', _w='.3057425548L', _tclCommands=[], _name='3057425548L', master=<...>, tk=<tkapp at remote 0x99d5410>, children={}) at remote 0xb63c9c8c>, '3061605100L': <Frame(widgetName='frame', _w='.3061605100L', _tclCommands=[], _name='3061605100L', master=<...>, tk=<tkapp at remote 0x99d5410>, children={'3056685484L': <M...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0xb6196f80
>        stack_pointer = <optimized out>
>        next_instr = 0x901588c "\001|"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb6196f6c
>        freevars = 0xb6196f7c
>        retval = 0x0
>        tstate = 0x9879df0
>        co = 0x97ba140
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x9015834 "|"
>        names = ('flush_fifo_once', 'time', 'root', 'update', 'sleep', 'mainloop', 'quit_app')
>        consts = (None, 1, -1, <float at remote 0x8ffa12c>)
>#11 0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0x97ba140, globals=globals@entry={'getdouble': <type at remote 0x48454d60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4845de00>, 'mainloop': <function at remote 0x9986994>, 'Canvas': <classobj at remote 0x998b4dc>, 'AtSelLast': <function at remote 0x9991d14>, 'CodeType': <type at remote 0x4844e920>, 'TRUE': 1, 'askdirectory': <function at remote 0x9999a3c>, 'getboolean': <function at remote 0x9986dbc>, 'LAST': 'last', 'BASELINE': 'baseline', 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0x998b2fc>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0x998b47c>, 'DictProxyType': <type at remote 0x4844f360>, 'ObjectType': <type at remote 0x4845dd20>, 'DictType': <type at remote 0x484586a0>, 'askopenfile': <function at remote 0x9999994>, 'EXTENDED': 'extended', 'OFF': 0, 'string': <module at remote 0xb77256ec>, '__file__': '/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyc', 'LongType': <type at remote 0x48457640>, 'CURRENT': 'current', 'CallWrapper': <classobj at remote 0x998b26c>, 'Scrollbar': <classobj at remote 0x998b6ec>, 'L...(truncated), locals=locals@entry=0x0, args=0xb6900a28, argcount=argcount@entry=2, kws=0xb6900a30, kwcount=0, defs=0x99d0b78, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0xb6196e34, for file /usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py, line 179, in run (self=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), skinNameList=['normal'], _MegaArchetype__componentInfo={'row1': (<Frame(widgetName='frame', _w='.161335820.3057331532L.3057425676L', _tclCommands=[], _name='3057425676L', master=<Frame(widgetName='frame', _w='.161335820.3057331532L', _tclCommands=[], _name='3057331532L', master=<Frame(widgetName='frame', _w='.161335820', _tclCommands=[], _name='161335820', master=<Tk(_tclCommands=['tkerror', 'exit', '161031948destroy', '3054815548L<lambda>', '3054829652Lcallit'], master=None, children={'3057425548L': <Frame(widgetName='frame', _w='.3057425548L', _tclCommands=[], _name='3057425548L', master=<...>, tk=<tkapp at remote 0x99d5410>, children={}) at remote 0xb63c9c8c>, '3061605100L': <Frame(widgetName='frame', _w='.3061605100L', _tclCommands=[], _name='3061605100L', master=<...>, tk=<tkapp at remote 0x99d5410>, children={'3056685484L': <M...(truncated)
>        retval = 0x0
>        fastlocals = 0xb6196f6c
>        freevars = 0xb6196f7c
>        tstate = 0x9879df0
>        x = <optimized out>
>        u = <optimized out>
>#12 0x483b230d in fast_function (nk=<optimized out>, na=2, n=2, pp_stack=0xb723e9d4, func=<function at remote 0x99d5144>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = 0x97ba140
>        nd = 1
>        globals = {'getdouble': <type at remote 0x48454d60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4845de00>, 'mainloop': <function at remote 0x9986994>, 'Canvas': <classobj at remote 0x998b4dc>, 'AtSelLast': <function at remote 0x9991d14>, 'CodeType': <type at remote 0x4844e920>, 'TRUE': 1, 'askdirectory': <function at remote 0x9999a3c>, 'getboolean': <function at remote 0x9986dbc>, 'LAST': 'last', 'BASELINE': 'baseline', 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0x998b2fc>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0x998b47c>, 'DictProxyType': <type at remote 0x4844f360>, 'ObjectType': <type at remote 0x4845dd20>, 'DictType': <type at remote 0x484586a0>, 'askopenfile': <function at remote 0x9999994>, 'EXTENDED': 'extended', 'OFF': 0, 'string': <module at remote 0xb77256ec>, '__file__': '/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyc', 'LongType': <type at remote 0x48457640>, 'CURRENT': 'current', 'CallWrapper': <classobj at remote 0x998b26c>, 'Scrollbar': <classobj at remote 0x998b6ec>, 'L...(truncated)
>        argdefs = <optimized out>
>        d = <optimized out>
>#13 call_function (oparg=<optimized out>, pp_stack=0xb723e9d4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x99d5144>
>        w = <optimized out>
>        na = 2
>        nk = <optimized out>
>        n = 2
>        pfunc = 0xb6900a28
>        x = <optimized out>
>#14 PyEval_EvalFrameEx (f=f@entry=Frame 0xb69008e4, for file /usr/lib/python2.7/site-packages/pmg_tk/__init__.py, line 35, in run (pymol_instance=<module at remote 0xb748e62c>, poll=0, skin='normal'), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0xb6900a30
>        stack_pointer = <optimized out>
>        next_instr = 0x90ad412 "\001Wn\021"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x2>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb6900a1c
>        freevars = 0xb6900a28
>        retval = 0x0
>        tstate = 0x9879df0
>        co = 0x90bd920
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x90ad3dc "y8"
>        names = ('hasattr', 'sys', 'argv', 'PMGApp', 'run', 'traceback', 'print_exc')
>        consts = (None, 'argv', 'pymol')
>#15 0x483b4049 in PyEval_EvalCodeEx (co=0x90bd920, globals={'getdouble': <type at remote 0x48454d60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4845de00>, 'mainloop': <function at remote 0x9986994>, 'Canvas': <classobj at remote 0x998b4dc>, 'AtSelLast': <function at remote 0x9991d14>, '__path__': ['/usr/lib/python2.7/site-packages/pmg_tk'], 'CodeType': <type at remote 0x4844e920>, 'Button': <classobj at remote 0x998b4ac>, 'TRUE': 1, 'getboolean': <function at remote 0x9986dbc>, 'LAST': 'last', 'BASELINE': 'baseline', 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0x998b2fc>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0x998b47c>, 'ColorEditor': <module at remote 0x99dbdf4>, 'DictProxyType': <type at remote 0x4844f360>, 'ObjectType': <type at remote 0x4845dd20>, 'DictType': <type at remote 0x484586a0>, 'askopenfile': <function at remote 0x9999994>, 'EXTENDED': 'extended', 'OFF': 0, 'string': <module at remote 0xb77256ec>, 'SEL': 'sel', '__file__': '/usr/lib/python2.7/site-packages/pmg_tk/__init__.pyc', 'ALL': 'all', 'CURRENT': 'current', 'CallWrap...(truncated), locals=locals@entry=0x0, args=args@entry=0x97b38a8, argcount=3, kws=kws@entry=0xb7791038, kwcount=kwcount@entry=0, defs=defs@entry=0x999b1d8, defcount=defcount@entry=2, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0xb69008e4, for file /usr/lib/python2.7/site-packages/pmg_tk/__init__.py, line 35, in run (pymol_instance=<module at remote 0xb748e62c>, poll=0, skin='normal')
>        retval = 0x0
>        fastlocals = 0xb6900a1c
>        freevars = 0xb6900a28
>        tstate = 0x9879df0
>        x = <optimized out>
>        u = <optimized out>
>#16 0x4833e990 in function_call (func=<function at remote 0x97ac87c>, arg=(<module at remote 0xb748e62c>, 0, 'normal'), kw={}) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = ()
>        d = 0x999b1d8
>        k = 0xb7791038
>        nk = <optimized out>
>        nd = 2
>#17 0x483178e1 in PyObject_Call (func=func@entry=<function at remote 0x97ac87c>, arg=arg@entry=(<module at remote 0xb748e62c>, 0, 'normal'), kw=kw@entry={}) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x4833e7e0 <function_call>
>#18 0x483afe7a in ext_do_call (nk=159070364, na=0, flags=<optimized out>, pp_stack=0xb723ec64, func=<function at remote 0x97ac87c>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4411
>        kwdict = {}
>        nstar = <optimized out>
>        callargs = <optimized out>
>        stararg = (<module at remote 0xb748e62c>, 0, 'normal')
>        result = 0x0
>#19 PyEval_EvalFrameEx (f=Frame 0xb6900784, for file /usr/lib/python2.7/threading.py, line 504, in run (self=<Thread(_Thread__ident=-1222378688, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2120>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2120>) at remote 0x99d0e8c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2190>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2190>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2190>) at remote 0x99d0dec>) at remote 0x99d0bac>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<function at remote 0x97ac87c>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2779
>        flags = <optimized out>
>        func = <function at remote 0x97ac87c>
>        na = 0
>        nk = 159070364
>        n = <optimized out>
>        pfunc = 0xb69008c0
>        sp = 0xb69008c4
>        stack_pointer = <optimized out>
>        next_instr = 0xb771f5d5 "\001n"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = 0x0
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb69008bc
>        freevars = 0xb69008c0
>        retval = 0x0
>        tstate = 0x9879df0
>        co = 0xb773b698
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0xb771f5b4 "z&"
>        names = ('_Thread__target', '_Thread__args', '_Thread__kwargs')
>        consts = (None,)
>#20 0x483b27ec in fast_function (nk=159882736, na=1, n=1, pp_stack=0xb723edd4, func=<function at remote 0xb7743304>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4184
>        retval = 0x0
>        i = <optimized out>
>        fastlocals = <optimized out>
>        f = <optimized out>
>        tstate = 0x9879df0
>        stack = <optimized out>
>        co = <optimized out>
>        nd = 0
>        globals = {'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated)
>        argdefs = <optimized out>
>        d = 0x0
>#21 call_function (oparg=<optimized out>, pp_stack=0xb723edd4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0xb7743304>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0xb6900734
>        x = <optimized out>
>#22 PyEval_EvalFrameEx (f=Frame 0xb69005ec, for file /usr/lib/python2.7/threading.py, line 551, in __bootstrap_inner (self=<Thread(_Thread__ident=-1222378688, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2120>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2120>) at remote 0x99d0e8c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2190>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2190>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2190>) at remote 0x99d0dec>) at remote 0x99d0bac>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<function at remote 0x97ac87c>, _Thread__kwargs={}, _Verbose__verbose=False, _...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0xb6900738
>        stack_pointer = <optimized out>
>        next_instr = 0x8dd1822 "\001Wn\a\001\004t\016"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb6900724
>        freevars = 0xb6900734
>        retval = 0x0
>        tstate = 0x9879df0
>        co = 0xb773b7b8
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x8dd177c "z\322\001|"
>        names = ('_set_ident', '_Thread__started', 'set', '_active_limbo_lock', '_active', '_Thread__ident', '_limbo', '_note', '_trace_hook', '_sys', 'settrace', '_profile_hook', 'setprofile', 'run', 'SystemExit', 'stderr', 'write', 'name', '_format_exc', '_Thread__exc_info', '_Thread__stderr', 'tb_frame', 'f_code', 'co_filename', 'tb_lineno', 'co_name', 'tb_next', '_Thread__exc_clear', '_Thread__stop', '_get_ident')
>        consts = (None, '%s.__bootstrap(): thread started', '%s.__bootstrap(): registering trace hook', '%s.__bootstrap(): registering profile hook', '%s.__bootstrap(): raised SystemExit', '%s.__bootstrap(): unhandled exception', 'Exception in thread %s:\n%s\n', 'Exception in thread ', ' (most likely raised during interpreter shutdown):', 'Traceback (most recent call last):', '  File "%s", line %s, in %s', '%s: %s', '%s.__bootstrap(): normal return')
>#23 0x483b27ec in fast_function (nk=159882736, na=1, n=1, pp_stack=0xb723ef44, func=<function at remote 0xb77433ac>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4184
>        retval = 0x0
>        i = <optimized out>
>        fastlocals = <optimized out>
>        f = <optimized out>
>        tstate = 0x9879df0
>        stack = <optimized out>
>        co = <optimized out>
>        nd = 0
>        globals = {'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated)
>        argdefs = <optimized out>
>        d = 0x0
>#24 call_function (oparg=<optimized out>, pp_stack=0xb723ef44) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0xb77433ac>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0xb69005c8
>        x = <optimized out>
>#25 PyEval_EvalFrameEx (f=f@entry=Frame 0xb690048c, for file /usr/lib/python2.7/threading.py, line 524, in __bootstrap (self=<Thread(_Thread__ident=-1222378688, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2120>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2120>) at remote 0x99d0e8c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2190>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2190>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2190>) at remote 0x99d0dec>) at remote 0x99d0bac>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<function at remote 0x97ac87c>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0xb69005cc
>        stack_pointer = <optimized out>
>        next_instr = 0xb771b2c0 "\001Wn#"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0xb69005c4
>        freevars = 0xb69005c8
>        retval = 0x0
>        tstate = 0x9879df0
>        co = 0xb773b6e0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0xb771b2b4 "y\016"
>        names = ('_Thread__bootstrap_inner', '_Thread__daemonic', '_sys', 'None')
>        consts = (None,)
>#26 0x483b4049 in PyEval_EvalCodeEx (co=0xb773b6e0, globals={'current_thread': <function at remote 0xb7743844>, '_BoundedSemaphore': <type at remote 0x8dd6fcc>, 'currentThread': <function at remote 0xb7743844>, '_Timer': <type at remote 0x8dd793c>, '_format_exc': <function at remote 0xb778041c>, 'Semaphore': <function at remote 0xb773fb54>, 'activeCount': <function at remote 0xb7743924>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x8dd26a4>, '_enumerate': <function at remote 0xb774395c>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb773fdbc>, '_shutdown': <instancemethod at remote 0xb776e914>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x8dd7484>, 'active_count': <function at remote 0xb7743924>, '__package__': None, '_Condition': <typ...(truncated), locals=locals@entry=0x0, args=args@entry=0x90bc438, argcount=1, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0xb690048c, for file /usr/lib/python2.7/threading.py, line 524, in __bootstrap (self=<Thread(_Thread__ident=-1222378688, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2120>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2120>) at remote 0x99d0e8c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2190>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2190>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2190>) at remote 0x99d0dec>) at remote 0x99d0bac>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<function at remote 0x97ac87c>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread...(truncated)
>        retval = 0x0
>        fastlocals = 0xb69005c4
>        freevars = 0xb69005c8
>        tstate = 0x9879df0
>        x = <optimized out>
>        u = <optimized out>
>#27 0x4833e891 in function_call (func=<function at remote 0xb774333c>, arg=(<Thread(_Thread__ident=-1222378688, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2120>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2120>) at remote 0x99d0e8c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2190>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2190>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2190>) at remote 0x99d0dec>) at remote 0x99d0bac>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<function at remote 0x97ac87c>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0xb748e62c>, 0, 'normal'), _Thread__stopped=False, _Thread__init...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = 0x0
>        d = 0x0
>        k = 0x0
>        nk = 0
>        nd = 0
>#28 0x483178e1 in PyObject_Call (func=func@entry=<function at remote 0xb774333c>, arg=arg@entry=(<Thread(_Thread__ident=-1222378688, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2120>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2120>) at remote 0x99d0e8c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2190>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2190>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2190>) at remote 0x99d0dec>) at remote 0x99d0bac>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<function at remote 0x97ac87c>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0xb748e62c>, 0, 'normal'), _Thread__stopped=False, _Thread__init...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x4833e7e0 <function_call>
>#29 0x483271dc in instancemethod_call (func=<function at remote 0xb774333c>, arg=(<Thread(_Thread__ident=-1222378688, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2120>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2120>) at remote 0x99d0e8c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77c2190>, acquire=<built-in method acquire of thread.lock object at remote 0xb77c2190>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77c2190>) at remote 0x99d0dec>) at remote 0x99d0bac>, _Thread__stderr=<module at remote 0xb748e674>, _Thread__target=<function at remote 0x97ac87c>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0xb748e62c>, 0, 'normal'), _Thread__stopped=False, _Thread__init...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/classobject.c:2578
>        self = <optimized out>
>        klass = <optimized out>
>        result = <optimized out>
>#30 0x483178e1 in PyObject_Call (func=func@entry=<instancemethod at remote 0x99926e4>, arg=arg@entry=(), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x48327120 <instancemethod_call>
>#31 0x483ace0c in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0x99926e4>, arg=(), kw=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3967
>        result = <optimized out>
>#32 0x483e30b1 in t_bootstrap (boot_raw=0x98a9c48) at /usr/src/debug/Python-2.7.3/Modules/threadmodule.c:614
>        boot = 0x98a9c48
>        tstate = 0x9879df0
>        res = <optimized out>
>#33 0x4436dadf in start_thread (arg=0xb723fb40) at pthread_create.c:309
>        __res = <optimized out>
>        pd = 0xb723fb40
>        now = <optimized out>
>        unwind_buf = {cancel_jmp_buf = {{jmp_buf = {1144512500, 0, 4001536, -1222380440, 916857881, 485782527}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}}
>        not_first_call = 0
>        pagesize_m1 = <optimized out>
>        sp = <optimized out>
>        freesize = <optimized out>
>#34 0x442733ce in clone () at ../sysdeps/unix/sysv/linux/i386/clone.S:133
>No locals.
>
>Thread 1 (Thread 0xb77d16c0 (LWP 1276)):
>#0  0x00c62416 in __kernel_vsyscall ()
>No symbol table info available.
>#1  0x441ad93f in __GI_raise (sig=sig@entry=6) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64
>        resultvar = <optimized out>
>        resultvar = <optimized out>
>        pid = 1144180724
>        selftid = 1276
>#2  0x441af293 in __GI_abort () at abort.c:91
>        save_stage = 2
>        act = {__sigaction_handler = {sa_handler = 0x44000000, sa_sigaction = 0x44000000}, sa_mask = {__val = {0, 43270939, 161873987, 1144180724, 1142580277, 0, 1143918745, 1, 4294967295, 1142899397, 161879472, 161859128, 43282571, 47914996, 161880600, 11, 1142693915, 1144180724, 1143920571, 56, 1144181792, 1, 1144183136, 1143920571, 3218042952, 1144180724, 46353702, 1144180724, 1144183136, 1142915264, 1144183136, 1143924760}}, sa_flags = 1143404456, sa_restorer = 0x4432cff4}
>        sigs = {__val = {32, 0 <repeats 31 times>}}
>#3  0x441a6677 in __assert_fail_base (fmt=0x442ee818 "%s%s%s:%u: %s%sAssertion `%s' failed.\n%n", assertion=assertion@entry=0x2c346dc "pc->num_instructions < 2048", file=file@entry=0x2c346ca "nv50_pc.h", line=line@entry=351, function=function@entry=0x2c34d26 "nv_alloc_instruction") at assert.c:94
>        str = 0x9a65b08 "P\324\062DP\324\062Dnv50_pc.h:351: nv_alloc_instruction: Assertion `pc->num_instructions < 2048' failed.\n"
>        total = 4096
>#4  0x441a6727 in __GI___assert_fail (assertion=assertion@entry=0x2c346dc "pc->num_instructions < 2048", file=file@entry=0x2c346ca "nv50_pc.h", line=line@entry=351, function=function@entry=0x2c34d26 "nv_alloc_instruction") at assert.c:103
>No locals.
>#5  0x0294850b in nv_alloc_instruction (opcode=5, pc=<optimized out>) at nv50_pc.h:351
>        insn = 0xb536afd0
>#6  new_instruction (opcode=5, pc=<optimized out>) at nv50_pc.h:362
>No locals.
>#7  bld_insn_1 (opcode=opcode@entry=5, src0=src0@entry=0xb5308060, bld=0x99ff638) at nv50_tgsi_to_nc.c:535
>        insn = 0xb536afd0
>#8  0x0294e4ea in bld_instruction (insn=0x9a587c0, bld=0x99ff638) at nv50_tgsi_to_nc.c:1602
>        dreg = 0x9a587d0
>        src1 = 0xb530876c
>        dst0 = {0xb530860c, 0xb53086e8, 0x0, 0x0}
>        prog = 0x939e4e8
>        src2 = 0xb5308060
>        temp = <optimized out>
>        src0 = 0xb5308740
>        c = <optimized out>
>        opcode = <optimized out>
>#9  nv50_tgsi_to_nc (pc=pc@entry=0xb52ed008, ti=ti@entry=0x99feb50) at nv50_tgsi_to_nc.c:2060
>        bld = 0x99ff638
>        c = <optimized out>
>        ip = <optimized out>
>#10 0x02943dc8 in nv50_generate_code (ti=ti@entry=0x99feb50) at nv50_pc.c:500
>        pc = 0xb52ed008
>        ret = <optimized out>
>        i = <optimized out>
>#11 0x0294195b in nv50_program_translate (p=p@entry=0x939e4e8) at nv50_program.c:658
>        ti = 0x99feb50
>        ret = <optimized out>
>        __FUNCTION__ = "nv50_program_translate"
>#12 0x02941ee8 in nv50_program_validate (nv50=0x9117520, prog=0x939e4e8) at nv50_shader_state.c:134
>No locals.
>#13 0x02942585 in nv50_fragprog_validate (nv50=0x9117520) at nv50_shader_state.c:194
>        chan = 0x9107668
>        fp = 0x939e4e8
>#14 0x0293e354 in nv50_state_validate (nv50=nv50@entry=0x9117520, mask=mask@entry=4294967295, words=words@entry=8) at nv50_state_validate.c:393
>        validate = <optimized out>
>        state_mask = 2064527
>        i = <optimized out>
>#15 0x0293f4e7 in nv50_draw_vbo (pipe=0x9117520, info=0xbfcf7550) at nv50_vbo.c:660
>        nv50 = 0x9117520
>        chan = 0x9107668
>        __PRETTY_FUNCTION__ = "nv50_draw_vbo"
>#16 0x02a6014a in st_draw_vbo (ctx=0x918b960, arrays=0x91e9220, prims=0xbfcf7618, nr_prims=1, ib=0x0, index_bounds_valid=1 '\001', min_index=0, max_index=22979, tfb_vertcount=0x0) at state_tracker/st_draw.c:1128
>        st = 0x91e5f10
>        pipe = 0x9117520
>        ibuffer = {index_size = 0, offset = 0, buffer = 0x0}
>        info = {indexed = 0 '\000', mode = 4, start = 0, count = 22980, start_instance = 0, instance_count = 1, index_bias = 0, min_index = 0, max_index = 22979, primitive_restart = 0 '\000', restart_index = 0, count_from_stream_output = 0x0}
>        i = <optimized out>
>        num_instances = <optimized out>
>        max_index_plus_base = <optimized out>
>        new_array = 0 '\000'
>#17 0x02a588bf in vbo_draw_arrays (ctx=0x918b960, mode=4, start=0, count=22980, numInstances=1) at vbo/vbo_exec_array.c:590
>        primCount = <optimized out>
>        vbo = 0x91e6ac8
>        exec = 0x91e7450
>        prim = {{mode = 4, indexed = 0, begin = 1, end = 1, weak = 0, no_current_update = 0, pad = 0, start = 0, count = 22980, basevertex = 0, num_instances = 1}, {mode = 0, indexed = 0, begin = 0, end = 0, weak = 0, no_current_update = 0, pad = 0, start = 0, count = 0, basevertex = 0, num_instances = 0}}
>#18 0x4736c089 in glDrawArrays (mode=mode@entry=4, first=first@entry=0, count=count@entry=22980) at ../../../src/mapi/glapi/glapi_mapi_tmp.h:3585
>        _tbl = 0x0
>        _func = <optimized out>
>#19 0x00cd5678 in CGO_gl_draw_buffers_not_indexed (I=0x91d0048, pc=0xbfcf7794) at layer1/CGO.c:5769
>        mode = 4
>        arrays = <optimized out>
>        narrays = <optimized out>
>        nverts = 22980
>        bufs = {1, 2, 3, 0}
>        shaderPrg = 0x91d2988
>        attr_a_Vertex = 0
>        attr_a_Normal = 1
>        attr_a_Color = 2
>        attr_a_Accessibility = 3
>#20 0x00ce7ab0 in CGORenderGL (I=0x987c4c0, color=color@entry=0x0, set1=0x0, set2=0xb5701140, info=info@entry=0xbfcf7970, rep=rep@entry=0x93a4940) at layer1/CGO.c:6680
>        pc = 0x9a07c40
>        op = 35
>        R = 0x91d0048
>        G = <optimized out>
>#21 0x00de9909 in RepCartoonRender (I=0x93a4940, info=0xbfcf7970) at layer2/RepCartoon.c:181
>        use_dlst = 0
>        use_shader = <optimized out>
>        ray = 0x1
>        pick = 0x0
>        G = <optimized out>
>#22 0x00d79e19 in CoordSetRender (I=0xb5747950, info=0xbfcf7970) at layer2/CoordSet.c:1430
>        a = <optimized out>
>        aa = <optimized out>
>        float_labels = 0
>        pass = 1
>        ray = 0x0
>        pick = 0x0
>        r = <optimized out>
>        sculpt_vdw_vis_mode = <optimized out>
>        G = 0x8dddd60
>#23 0x00da0aa1 in ObjectMoleculeRender (I=0xb576bf38, info=0xbfcf7970) at layer2/ObjectMolecule.c:12496
>        G = 0x8dddd60
>        state = <optimized out>
>        ray = 0x0
>        pick = 0x0
>        pass = 1
>        a = <optimized out>
>        cs = 0xb5747950
>        pop_matrix = 0
>        use_matrices = 0
>#24 0x00d41fc7 in SceneRenderAll (G=G@entry=0x8dddd60, context=context@entry=0xbfcf7bc8, normal=normal@entry=0xbfcf7b68, pickVLA=pickVLA@entry=0x0, pass=pass@entry=1, fat=fat@entry=0, width_scale=width_scale@entry=0, grid=grid@entry=0xbfcf7be0, dynamic_pass=dynamic_pass@entry=0) at layer1/Scene.c:8574
>        slot_vla = 0x0
>        I = 0x9388a10
>        rec = <optimized out>
>        vv = {0.769516647, -0.471108317, -0.431161582, 1}
>        state = 0
>        info = {state = 0, ray = 0x0, alpha_cgo = 0x0, pick = 0x0, pass = 1, width_scale_flag = 0, front = 134.138458, back = 206.138458, stereo_front = 134.138458, fog_start = 166.538452, fog_end = 206.138458, view_normal = {0.769516647, -0.471108317, -0.431161582}, width_scale = 0, vertex_scale = 0.125, pmv_matrix = 0x9388b18, sampling = 1, ortho = 0, line_lighting = 0, dynamic_width = 1, dynamic_width_factor = 0.0599999987, dynamic_width_min = 0.75, dynamic_width_max = 2.5}
>#25 0x00d494b5 in DoRendering (G=G@entry=0x8dddd60, I=I@entry=0x9388a10, offscreen=offscreen@entry=0, grid=grid@entry=0xbfcf7be0, times=times@entry=0, curState=curState@entry=0, normal=normal@entry=0xbfcf7b68, context=context@entry=0xbfcf7bc8, width_scale=0, renderTransparent=renderTransparent@entry=1, onlySelections=onlySelections@entry=0, excludeSelections=excludeSelections@entry=0) at layer1/Scene.c:8925
>        slot = <optimized out>
>        pass = <optimized out>
>#26 0x00d4ec3e in SceneRender (G=G@entry=0x8dddd60, pick=0x0, pick@entry=0xdc, x=0, x@entry=220, y=0, y@entry=220, smp=0x0, smp@entry=0xdc, oversize_width=0, oversize_width@entry=220, oversize_height=0, oversize_height@entry=220, click_side=0, click_side@entry=220, force_copy=0) at layer1/Scene.c:9984
>        times = 0
>        offscreen = 0
>        I = <optimized out>
>        fog = {0, 0, 0, 1}
>        v = <optimized out>
>        lowBits = <optimized out>
>        highBits = <optimized out>
>        lowBitVLA = 0x0
>        highBitVLA = 0x0
>        high = <optimized out>
>        low = <optimized out>
>        zAxis = {0, 0, 1, 0}
>        normal = {0.769516647, -0.471108317, -0.431161582, 0}
>        aspRat = 1.328125
>        height = <optimized out>
>        width = <optimized out>
>        start_time = 0
>        view_save = {0, 0, 860, 498}
>        pickVLA = <optimized out>
>        pik = <optimized out>
>        lastIndex = 0
>        lastPtr = 0x0
>        index = <optimized out>
>        curState = 0
>        nPick = <optimized out>
>        nHighBits = <optimized out>
>        nLowBits = <optimized out>
>        fov = 20
>        must_render_stereo = <optimized out>
>        mono_as_quad_stereo = <optimized out>
>        stereo_using_mono_matrix = 0
>        debug_pick = 0
>        render_buffer = 1029
>        context = {unit_left = -0.166666672, unit_right = 1.16666663, unit_top = 0, unit_bottom = 1, unit_front = -0.5, unit_back = 0.5}
>        width_scale = 0
>        stereo_mode = 0
>        stereo = 0
>        grid = {n_col = 0, n_row = 0, first_slot = 0, last_slot = 0, asp_adjust = 0, active = 0, size = 0, slot = 0, mode = 0, cur_view = {0, 0, 0, 0}, context = {unit_left = 0, unit_right = 0, unit_top = 0, unit_bottom = 0, unit_front = 0, unit_back = 0}}
>        grid_mode = <optimized out>
>        fog_active = 1
>#27 0x00d081ef in OrthoDoDraw (G=G@entry=0x8dddd60, render_mode=render_mode@entry=0) at layer1/Ortho.c:1606
>        I = 0xb72c6008
>        x = <optimized out>
>        y = <optimized out>
>        l = <optimized out>
>        lcount = <optimized out>
>        str = <optimized out>
>        v = <optimized out>
>        showLines = <optimized out>
>        height = <optimized out>
>        overlay = 0
>        text = 0
>        rightSceneMargin = 220
>        internal_feedback = 1
>        times = 1
>        double_pump = 0
>        bg_color = <optimized out>
>        skip_prompt = 0
>        render = <optimized out>
>        internal_gui_mode = 0
>#28 0x00e5468c in ExecutiveDrawNow (G=G@entry=0x8dddd60) at layer3/Executive.c:12109
>        stereo_mode = 2
>        stereo = 0
>        I = 0x93a1e70
>#29 0x00ea7f9b in CmdRefreshNow (self=<PyCObject at remote 0xb748e6c8>, args=(<PyCObject at remote 0xb748e6c8>,)) at layer4/Cmd.c:6280
>        G = 0x8dddd60
>        ok = <optimized out>
>#30 0x4835401d in PyCFunction_Call (func=func@entry=<built-in method refresh_now of PyCObject object at remote 0xb748e6e0>, arg=arg@entry=(<PyCObject at remote 0xb748e6c8>,), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/methodobject.c:116
>        f = 0xb74936cc
>        meth = 0xea7ec0 <CmdRefreshNow>
>        self = <PyCObject at remote 0xb748e6e0>
>        size = <optimized out>
>#31 0x483b30fb in call_function (oparg=<optimized out>, pp_stack=0xbfcf7fd4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4098
>        callargs = (<PyCObject at remote 0xb748e6c8>,)
>        flags = 1
>        tstate = <optimized out>
>        func = <built-in method refresh_now of PyCObject object at remote 0xb748e6e0>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 148050000
>        pfunc = 0x8dd9b18
>        x = <optimized out>
>#32 PyEval_EvalFrameEx (f=f@entry=Frame 0x8dd99d4, for file /usr/lib/python2.7/site-packages/pymol/internal.py, line 544, in _refresh (swap_buffers=1, _self=<module at remote 0xb748ebfc>, r=None), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x8dd9b1c
>        stack_pointer = <optimized out>
>        next_instr = 0xb74ba219 "}\002"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x8dd9b0c
>        freevars = 0x8dd9b18
>        retval = 0x0
>        tstate = 0x8d31050
>        co = 0x8e51800
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0xb74ba1c4 "d"
>        names = ('None', 'lock', 'hasattr', '_pymol', 'thread', 'get_ident', 'glutThread', '_cmd', 'refresh_now', '_COb', 'refresh', 'refresh_later', 'unlock')
>        consts = (None, 'glutThread', -1)
>#33 0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0x8e51800, globals=globals@entry={'is_ok': <function at remote 0x8e3280c>, '_invalidate_color_sc': <function at remote 0x8efded4>, 'cmd': <module at remote 0xb748ebfc>, '_do': <function at remote 0x8efdb1c>, '_mpng': <function at remote 0x8efdb54>, 'Shortcut': <classobj at remote 0xb774ae9c>, '_coordset_update_spawn': <function at remote 0x8efda74>, '_copy_image': <function at remote 0x8efdbc4>, '_dump_ufloats': <function at remote 0x8f31064>, 'io': <module at remote 0xb74a25fc>, '_fake_drag': <function at remote 0x8efdf7c>, '_cmmd': <function at remote 0x8efdcdc>, '_cache_purge': <function at remote 0x8efd8ec>, '_validate_color_sc': <function at remote 0x8efde9c>, '_object_update_spawn': <function at remote 0x8efdae4>, '_quit': <function at remote 0x8efddbc>, '_special': <function at remote 0x8efdc34>, '_ctrl': <function at remote 0x8efdc6c>, 'DEFAULT_SUCCESS': None, '_cmd': <module at remote 0xb748eaac>, 'is_string': <function at remote 0x8e326bc>, '_ray_hash_spawn': <function at remote 0x8efd9cc>, '_cache_get': <function at remote 0x8efd9...(truncated), locals=locals@entry=0x0, args=0x995d910, argcount=argcount@entry=0, kws=0x995d910, kwcount=1, defs=0x8f30518, defcount=defcount@entry=2, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0x8dd99d4, for file /usr/lib/python2.7/site-packages/pymol/internal.py, line 544, in _refresh (swap_buffers=1, _self=<module at remote 0xb748ebfc>, r=None)
>        retval = 0x0
>        fastlocals = 0x8dd9b0c
>        freevars = 0x8dd9b18
>        tstate = 0x8d31050
>        x = <optimized out>
>        u = <optimized out>
>#34 0x483b230d in fast_function (nk=<optimized out>, na=0, n=2, pp_stack=0xbfcf81b4, func=<function at remote 0x8efddf4>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = 0x8e51800
>        nd = 2
>        globals = {'is_ok': <function at remote 0x8e3280c>, '_invalidate_color_sc': <function at remote 0x8efded4>, 'cmd': <module at remote 0xb748ebfc>, '_do': <function at remote 0x8efdb1c>, '_mpng': <function at remote 0x8efdb54>, 'Shortcut': <classobj at remote 0xb774ae9c>, '_coordset_update_spawn': <function at remote 0x8efda74>, '_copy_image': <function at remote 0x8efdbc4>, '_dump_ufloats': <function at remote 0x8f31064>, 'io': <module at remote 0xb74a25fc>, '_fake_drag': <function at remote 0x8efdf7c>, '_cmmd': <function at remote 0x8efdcdc>, '_cache_purge': <function at remote 0x8efd8ec>, '_validate_color_sc': <function at remote 0x8efde9c>, '_object_update_spawn': <function at remote 0x8efdae4>, '_quit': <function at remote 0x8efddbc>, '_special': <function at remote 0x8efdc34>, '_ctrl': <function at remote 0x8efdc6c>, 'DEFAULT_SUCCESS': None, '_cmd': <module at remote 0xb748eaac>, 'is_string': <function at remote 0x8e326bc>, '_ray_hash_spawn': <function at remote 0x8efd9cc>, '_cache_get': <function at remote 0x8efd9...(truncated)
>        argdefs = <optimized out>
>        d = <optimized out>
>#35 call_function (oparg=<optimized out>, pp_stack=0xbfcf81b4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x8efddf4>
>        w = <optimized out>
>        na = 0
>        nk = <optimized out>
>        n = 2
>        pfunc = 0x995d90c
>        x = <optimized out>
>#36 PyEval_EvalFrameEx (f=f@entry=Frame 0x995d7d4, for file <string>, line 1, in <module> (), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x995d918
>        stack_pointer = <optimized out>
>        next_instr = 0xb614ddf3 "\001d\001"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = 0x0
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x995d90c
>        freevars = 0x995d90c
>        retval = 0x0
>        tstate = 0x8d31050
>        co = 0xb615c728
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0xb614dde4 "e"
>        names = ('cmd', '_refresh')
>        consts = ('_self', None)
>#37 0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0xb615c728, globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated), args=args@entry=0x0, argcount=argcount@entry=0, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0x995d7d4, for file <string>, line 1, in <module> ()
>        retval = 0x0
>        fastlocals = 0x995d90c
>        freevars = 0x995d90c
>        tstate = 0x8d31050
>        x = <optimized out>
>        u = <optimized out>
>#38 0x483b41c4 in PyEval_EvalCode (co=co@entry=0xb615c728, globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated)) at /usr/src/debug/Python-2.7.3/Python/ceval.c:689
>No locals.
>#39 0x483cd1ab in run_mod (mod=<optimized out>, filename=filename@entry=0x483f82fd "<string>", globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated), flags=flags@entry=0x0, arena=arena@entry=0x987bea0) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1361
>        co = 0xb615c728
>        v = <optimized out>
>#40 0x483cdefc in PyRun_StringFlags (str=0xb614dd84 "cmd._refresh(_self=cmd)\n", start=start@entry=257, globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated), flags=flags@entry=0x0) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1324
>        ret = 0x0
>        mod = <optimized out>
>        arena = 0x987bea0
>#41 0x483b26be in exec_statement (locals={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated), globals={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15, 'CG2': 16, '...(truncated), prog=<optimized out>, f=Frame 0x995cdc4, for file /usr/lib/python2.7/site-packages/pymol/parser.py, line 464, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': ...(truncated)) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4831
>        tmp = <optimized out>
>        str = 0xb614dd84 "cmd._refresh(_self=cmd)\n"
>        cf = {cf_flags = 0}
>        n = <optimized out>
>        v = <optimized out>
>        plain = 0
>#42 PyEval_EvalFrameEx (f=f@entry=Frame 0x995cdc4, for file /usr/lib/python2.7/site-packages/pymol/parser.py, line 464, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': ...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:1954
>        stack_pointer = 0x995cf60
>        next_instr = 0x8f87d1f "q~\021|\003"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = None
>        v = None
>        w = None
>        u = ('cmd._refresh(_self=cmd)\n', {'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD...(truncated)
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x995cefc
>        freevars = 0x995cf60
>        retval = 0x0
>        tstate = 0x8d31050
>        co = 0x8f55458
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x8f86bd4 "|"
>        names = ('layer', 'get', 'nest', 'None', 'result', 'embed_sentinel', 'string', 'strip', 'embed_type', 'len', 'embed_list', 'rstrip', 'join', 'pymol_names', 'traceback', 'print_exc', 'embed_line', 'append', 'com0', 'com1', 'str', 'cont', 'parsing', 'split', 'next', 'com2', 'input', 'py_delims', 'has_key', 'cmd', 'kwhash', 'interpret', 'type', 'types', 'StringType', 'sort', 'list_to_str_list', 'QuietException', 'keyword', 'kw', 'NO_CHECK', 'replace', 'LITERAL', 'SECURE', 'prepare_call', 'parse_arg', 'args', 'kw_args', 'apply', 'PYTHON', 'ABORT', 'MOVIE', 'count', 'remove', 'map', 'RUN', 'SPAWN', 'exp_path', 're', 'search', '_feedback', 'fb_module', 'parser', 'fb_mask', 'warnings', 'run_file_as_module', 'spawn_file', '__main__', '__dict__', 'run_file', 'sc_path', '_pymol', '__script__', 'EMBED', 'os', 'path', 'splitext', 'basename', 'embed_dict', 'SKIP', 'apply_arg', 'PYTHON_BLOCK', 'lower', 'open', 'script', 'NestLayer', 'readline', 'parse', 'get_setting_legacy', 'close', 'blather', 'CmdException')
>        consts = (None, 0, ' Embed: read %d lines.', 1, 'PyMOL>', '', 2, ' Skip: skipped %d lines.', '\n', '%5d:%s', -1, '\\', ';', ' ', '/', 'Error: Python expressions disallowed in this file.', 'Error: ambiguous command: ', 4, 'Error: Python expressions disallowed in this file.  ', 'Error: Command disallowed in this file.', 'mode', '_self', 'Error: Movie commands disallowed in this file. ', 3, '(', ')', ',', '\\.pml$', "Warning: use '@' instead of 'spawn' with PyMOL command scripts?", 'spawn', 'main', 'private', 'local', 'global', 'module', 'Error: spawn disallowed in this file.', "Warning: use '@' instead of 'run' with PyMOL command scripts?", 'Error: run disallowed in this file.', 'pdb', 'embed end', 'Error: embed only legal in special files (e.g. p1m)', 'sentinel', 'skip end', 'end', 'skip', 'python end', 'Error: Python blocks disallowed in this file.', 'Error: unknown keyword mode: ', 'Error: invalid arguments for %s command.', '@', -3, 'p1m', '\\.py$|\\.pym$', "Warning: use 'run' instead of '@' with Python files?", 'r'...(truncated)
>#43 0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0x8f55458, globals=globals@entry={'Parser': <classobj at remote 0x8f4dd1c>, 'new_complete_closure': <function at remote 0x8f5964c>, '_feedback': <function at remote 0x8e32e64>, 'QuietException': <classobj at remote 0xb774afbc>, 'CmdException': <classobj at remote 0xb774a4ac>, 'exp_path': <function at remote 0x8e3287c>, '__main__': <module at remote 0xb7791494>, 'types': <module at remote 0xb775850c>, '__package__': 'pymol', 're': <module at remote 0xb77833bc>, 'NestLayer': <classobj at remote 0x8f4dcec>, 'py_delims': {'*=': 1, '**=': 1, '|=': 1, '&=': 1, '%=': 1, '//=': 1, '^=': 1, '<<=': 1, '>>=': 1, '/=': 1, '-=': 1, '=': 1, '+=': 1}, 'glob': <module at remote 0xb748e944>, 'string': <module at remote 0xb77256ec>, '__builtins__': {'bytearray': <type at remote 0x4844d7a0>, 'IndexError': <type at remote 0x484515a0>, 'all': <built-in function all>, 'help': <_Helper at remote 0xb771812c>, 'vars': <built-in function vars>, 'SyntaxError': <type at remote 0x48451220>, 'unicode': <type at remote 0x484613e0>, 'UnicodeDecodeError': <type at remote 0x...(truncated), locals=locals@entry=0x0, args=0x995cda0, argcount=argcount@entry=3, kws=0x995cdac, kwcount=0, defs=0x0, defcount=defcount@entry=0, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0x995cdc4, for file /usr/lib/python2.7/site-packages/pymol/parser.py, line 464, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': ...(truncated)
>        retval = 0x0
>        fastlocals = 0x995cefc
>        freevars = 0x995cf60
>        tstate = 0x8d31050
>        x = <optimized out>
>        u = <optimized out>
>#44 0x483b230d in fast_function (nk=<optimized out>, na=3, n=3, pp_stack=0xbfcf8624, func=<function at remote 0x8f59534>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = 0x8f55458
>        nd = 0
>        globals = {'Parser': <classobj at remote 0x8f4dd1c>, 'new_complete_closure': <function at remote 0x8f5964c>, '_feedback': <function at remote 0x8e32e64>, 'QuietException': <classobj at remote 0xb774afbc>, 'CmdException': <classobj at remote 0xb774a4ac>, 'exp_path': <function at remote 0x8e3287c>, '__main__': <module at remote 0xb7791494>, 'types': <module at remote 0xb775850c>, '__package__': 'pymol', 're': <module at remote 0xb77833bc>, 'NestLayer': <classobj at remote 0x8f4dcec>, 'py_delims': {'*=': 1, '**=': 1, '|=': 1, '&=': 1, '%=': 1, '//=': 1, '^=': 1, '<<=': 1, '>>=': 1, '/=': 1, '-=': 1, '=': 1, '+=': 1}, 'glob': <module at remote 0xb748e944>, 'string': <module at remote 0xb77256ec>, '__builtins__': {'bytearray': <type at remote 0x4844d7a0>, 'IndexError': <type at remote 0x484515a0>, 'all': <built-in function all>, 'help': <_Helper at remote 0xb771812c>, 'vars': <built-in function vars>, 'SyntaxError': <type at remote 0x48451220>, 'unicode': <type at remote 0x484613e0>, 'UnicodeDecodeError': <type at remote 0x...(truncated)
>        argdefs = <optimized out>
>        d = <optimized out>
>#45 call_function (oparg=<optimized out>, pp_stack=0xbfcf8624) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x8f59534>
>        w = <optimized out>
>        na = 3
>        nk = <optimized out>
>        n = 3
>        pfunc = 0x995cda0
>        x = <optimized out>
>#46 PyEval_EvalFrameEx (f=f@entry=Frame 0x995cc5c, for file /usr/lib/python2.7/site-packages/pymol/parser.py, line 615, in <lambda> (s='cmd._refresh(_self=cmd)', secure=0, p=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, '...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x995cdac
>        stack_pointer = <optimized out>
>        next_instr = 0x8f53cc3 "S"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x3>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x995cd94
>        freevars = 0x995cda0
>        retval = 0x0
>        tstate = 0x8d31050
>        co = 0x8f580b0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x8f53cb4 "|\002"
>        names = ('parse',)
>        consts = (None,)
>#47 0x483b4049 in PyEval_EvalCodeEx (co=0x8f580b0, globals={'Parser': <classobj at remote 0x8f4dd1c>, 'new_complete_closure': <function at remote 0x8f5964c>, '_feedback': <function at remote 0x8e32e64>, 'QuietException': <classobj at remote 0xb774afbc>, 'CmdException': <classobj at remote 0xb774a4ac>, 'exp_path': <function at remote 0x8e3287c>, '__main__': <module at remote 0xb7791494>, 'types': <module at remote 0xb775850c>, '__package__': 'pymol', 're': <module at remote 0xb77833bc>, 'NestLayer': <classobj at remote 0x8f4dcec>, 'py_delims': {'*=': 1, '**=': 1, '|=': 1, '&=': 1, '%=': 1, '//=': 1, '^=': 1, '<<=': 1, '>>=': 1, '/=': 1, '-=': 1, '=': 1, '+=': 1}, 'glob': <module at remote 0xb748e944>, 'string': <module at remote 0xb77256ec>, '__builtins__': {'bytearray': <type at remote 0x4844d7a0>, 'IndexError': <type at remote 0x484515a0>, 'all': <built-in function all>, 'help': <_Helper at remote 0xb771812c>, 'vars': <built-in function vars>, 'SyntaxError': <type at remote 0x48451220>, 'unicode': <type at remote 0x484613e0>, 'UnicodeDecodeError': <type at remote 0x...(truncated), locals=locals@entry=0x0, args=args@entry=0xb6161cf8, argcount=2, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x90bc478, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0x995cc5c, for file /usr/lib/python2.7/site-packages/pymol/parser.py, line 615, in <lambda> (s='cmd._refresh(_self=cmd)', secure=0, p=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0xb77c2150>, _RLock__count=0) at remote 0xb774bd8c>, '_stdin_reader_thread': None, '__path__': ['/usr/lib/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0xb774be0c>, 'keyboard': <module at remote 0x903f4f4>, 'keywords': <module at remote 0x9008704>, 'start_pymol': <function at remote 0xb774c6f4>, 'm4x': <module at remote 0x8f397c4>, 'copy': <module at remote 0xb7723df4>, 'feedingback': <module at remote 0x8e47104>, 'menu': <module at remote 0x903fd1c>, 'wizard': <module at remote 0x99dba1c>, 'shortcut': <module at remote 0xb749905c>, 'internal': <module at remote 0x8e47a64>, 'invocation': <module at remote 0xb748e914>, 'string': <module at remote 0xb77256ec>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, '...(truncated)
>        retval = 0x0
>        fastlocals = 0x995cd94
>        freevars = 0x995cda0
>        tstate = 0x8d31050
>        x = <optimized out>
>        u = <optimized out>
>#48 0x4833e891 in function_call (func=<function at remote 0x97ac4fc>, arg=('cmd._refresh(_self=cmd)', 0), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = 0x0
>        d = 0x90bc478
>        k = 0x0
>        nk = 0
>        nd = 1
>#49 0x483178e1 in PyObject_Call (func=func@entry=<function at remote 0x97ac4fc>, arg=arg@entry=('cmd._refresh(_self=cmd)', 0), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x4833e7e0 <function_call>
>#50 0x483179c5 in call_function_tail (callable=<function at remote 0x97ac4fc>, args=('cmd._refresh(_self=cmd)', 0)) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2561
>        retval = <optimized out>
>#51 0x48317a51 in PyObject_CallFunction (callable=<function at remote 0x97ac4fc>, format=format@entry=0xf00e26 "si") at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2585
>        va = <optimized out>
>        args = <optimized out>
>#52 0x00d0f160 in PFlush (G=G@entry=0x8dddd60) at layer1/P.c:2628
>        err = <optimized out>
>        buffer = "cmd._refresh(_self=cmd)\000\267\000Vx\267x\204)*\364\237DH\000Vx\267L\276t\267\274^\335\b\332\347\063H\310\212\260\270\177\000\000\000\250X\335\b\364\237DH\000Vx\267\246\347\063H\331\372\064H\364\237DHt\370{\267\b\000\000\000P\020\323\b\374\062y\tl\222EH\330Xs\267\000\000\000\000\000\000\000\000\000\370{\267l\222EHl\222EH\f\317r\267\002\000\000\000D\230s\267\377\377\377\377\000\000\000\000\234rs\267\004\000\000\000\377\377\377\377\357\317\063H\374\062y\t\001\000\000\000\364\237DH\365\354=H\270\336\216\t<4y\t\364\237DH\254\355=H\270\336\216\t\000Vx\267\331\317\063H\330\354=H\364\237DH\326\310<H\364\237DH\205\334:HP\020\323\b\001\000\000\000\f\317r\267\000\000\000\000\002\000\000\000\320\237~\t\000\000\000\000\070\034t\267\001", '\000' <repeats 11 times>, "8\034t\267\001\000\000\000\000\000\000\000\f\317r\267\000\000\000\000\374"...
>        did_work = 1
>#53 0x00ed4d5e in PyMOL_Idle (I=0x90d2850) at layer5/PyMOL.c:4023
>        G = 0x8dddd60
>        did_work = 0
>#54 0x00ed6e5d in MainBusyIdle () at layer5/main.c:1465
>        G = 0x8dddd60
>        I = 0x91ecc30
>#55 0x44445530 in glutMainLoop () at freeglut_main.c:1554
>        window = <optimized out>
>        action = <optimized out>
>#56 0x00ed8eab in launch (options=<optimized out>, own_the_options=<optimized out>) at layer5/main.c:1955
>        I = 0x91ecc30
>        multisample_mask = <optimized out>
>        theWindow = 1
>        G = 0x8dddd60
>        own_the_options = 1
>#57 was_main () at layer5/main.c:2006
>        options = <optimized out>
>#58 0x00e9eb6f in CmdRunPyMOL (self=<PyCObject at remote 0xb748e680>, args=(<PyCObject at remote 0xb748e680>, 0)) at layer4/Cmd.c:4771
>        block_input_hook = 0
>#59 0x4835401d in PyCFunction_Call (func=func@entry=<built-in method runpymol of PyCObject object at remote 0xb748e6e0>, arg=arg@entry=(<PyCObject at remote 0xb748e680>, 0), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/methodobject.c:116
>        f = 0xb749390c
>        meth = 0xe9eaf0 <CmdRunPyMOL>
>        self = <PyCObject at remote 0xb748e6e0>
>        size = <optimized out>
>#60 0x483b30fb in call_function (oparg=<optimized out>, pp_stack=0xbfcf9164) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4098
>        callargs = (<PyCObject at remote 0xb748e680>, 0)
>        flags = 1
>        tstate = <optimized out>
>        func = <built-in method runpymol of PyCObject object at remote 0xb748e6e0>
>        w = <optimized out>
>        na = 2
>        nk = <optimized out>
>        n = 148050000
>        pfunc = 0x907a16c
>        x = <optimized out>
>#61 PyEval_EvalFrameEx (f=f@entry=Frame 0x907a02c, for file /usr/lib/python2.7/site-packages/pymol/__init__.py, line 470, in start_pymol (block_input_hook=0, _COb=<PyCObject at remote 0xb748e680>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x907a170
>        stack_pointer = <optimized out>
>        next_instr = 0xb771ef16 "\001d"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x2>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x907a164
>        freevars = 0x907a16c
>        retval = 0x0
>        tstate = 0x8d31050
>        co = 0xb771dde8
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0xb771eef4 "t"
>        names = ('prime_pymol', '_cmd', '_get_global_C_object', 'runpymol')
>        consts = (None,)
>#62 0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0xb771dde8, globals=globals@entry={'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated), locals=locals@entry=0x0, args=0x8d4dbb0, argcount=argcount@entry=1, kws=0x8d4dbb4, kwcount=0, defs=0xb774b258, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0x907a02c, for file /usr/lib/python2.7/site-packages/pymol/__init__.py, line 470, in start_pymol (block_input_hook=0, _COb=<PyCObject at remote 0xb748e680>)
>        retval = 0x0
>        fastlocals = 0x907a164
>        freevars = 0x907a16c
>        tstate = 0x8d31050
>        x = <optimized out>
>        u = <optimized out>
>#63 0x483b230d in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0xbfcf9344, func=<function at remote 0x9018f7c>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = 0xb771dde8
>        nd = 1
>        globals = {'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated)
>        argdefs = <optimized out>
>        d = <optimized out>
>#64 call_function (oparg=<optimized out>, pp_stack=0xbfcf9344) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x9018f7c>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0x8d4dbac
>        x = <optimized out>
>#65 PyEval_EvalFrameEx (f=f@entry=Frame 0x8d4da74, for file /usr/lib/python2.7/site-packages/pymol/__init__.py, line 491, in <module> (), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x8d4dbb4
>        stack_pointer = <optimized out>
>        next_instr = 0x8dd242a "\001n\250"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = WHY_NOT
>        err = 0
>        x = <unknown at remote 0x1>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x8d4dbac
>        freevars = 0x8d4dbac
>        retval = 0x0
>        tstate = 0x8d31050
>        co = 0xb771df98
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x8dd1e54 "d"
>        names = ('copy', '__main__', '__name__', 'invocation', '_init_internals', 'hasattr', 'pymol_launch', 'thread', 'threading', 'os', 'sys', 're', 'string', 'time', 'traceback', 'math', 'environ', 'has_key', '__file__', 'pymol_file', 'getcwd', 'sub', 'pymol_path', 'path', 'isdir', 'NameError', 'argv', 'pymol_argv', 'try_again', 'pymol', 'ImportError', 'exc_clear', 'insert', 'dirname', 'globals', 'None', '_once', 'CmdException', 'Scratch_Storage', 'Session_Storage', 'modules', 'platform', 'loc2', 'exists', 'loc1', 'setcheckinterval', 'join', 'test_path', 'freemol_libpy', 'append', 'exec_str', 'exec_deferred', 'adapt_to_hardware', 'launch_gui', 'prime_pymol', 'start_pymol', '_cmd', 'cmd', 'thread_launch', '_get_global_C_object', '_COb', 'parse_args', 'xwin', 'finish_launching')
>        consts = (-1, None, '__main__', <code at remote 0xb7721848>, 'pymol_launch', 2, 3, 'PYMOL_PATH', 0, 1, '\\', '/', ':', '[\\/\\\\][^\\/\\\\]*$', '', '[\\/\\\\]modules[\\/\\\\]pymol[\\/\\\\]__init__\\.py[c]*$', 'pymol_argv', 'pymol', '-q', 4, '_once', 'CmdException', <code at remote 0xb771d4e8>, 'Scratch_Storage', <code at remote 0xb771d9f8>, 'Session_Storage', <code at remote 0xb771da88>, 'win32', '/modules', '/modules/numeric', 'FREEMOL', 'freemol', 'libpy', <code at remote 0xb771db18>, <code at remote 0xb771dba8>, <code at remote 0xb771dc38>, <code at remote 0xb771dcc8>, <code at remote 0xb771dd58>, <code at remote 0xb771dde8>, <code at remote 0xb771de78>, ('invocation',), 'DISPLAY', ('*',), <code at remote 0xb771df08>, ('\\', '/'), (), (...), (...))
>#66 0x483b4049 in PyEval_EvalCodeEx (co=co@entry=0xb771df98, globals=globals@entry={'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated), locals=locals@entry={'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated), args=args@entry=0x0, argcount=argcount@entry=0, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = Frame 0x8d4da74, for file /usr/lib/python2.7/site-packages/pymol/__init__.py, line 491, in <module> ()
>        retval = 0x0
>        fastlocals = 0x8d4dbac
>        freevars = 0x8d4dbac
>        tstate = 0x8d31050
>        x = <optimized out>
>        u = <optimized out>
>#67 0x483b41c4 in PyEval_EvalCode (co=co@entry=0xb771df98, globals=globals@entry={'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated), locals=locals@entry={'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated)) at /usr/src/debug/Python-2.7.3/Python/ceval.c:689
>No locals.
>#68 0x483cd1ab in run_mod (mod=<optimized out>, filename=filename@entry=0xbfcfb83e "/usr/lib/python2.7/site-packages/pymol/__init__.py", globals=globals@entry={'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated), locals=locals@entry={'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated), flags=flags@entry=0xbfcf957c, arena=arena@entry=0x8db4998) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1361
>        co = 0xb771df98
>        v = <optimized out>
>#69 0x483ce16c in PyRun_FileExFlags (fp=fp@entry=0x8d4da68, filename=filename@entry=0xbfcfb83e "/usr/lib/python2.7/site-packages/pymol/__init__.py", start=start@entry=257, globals=globals@entry={'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated), locals=locals@entry={'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated), closeit=closeit@entry=1, flags=flags@entry=0xbfcf957c) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1347
>        ret = <optimized out>
>        mod = <optimized out>
>        arena = 0x8db4998
>#70 0x483ced12 in PyRun_SimpleFileExFlags (fp=fp@entry=0x8d4da68, filename=filename@entry=0xbfcfb83e "/usr/lib/python2.7/site-packages/pymol/__init__.py", closeit=closeit@entry=1, flags=flags@entry=0xbfcf957c) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:951
>        m = <optimized out>
>        d = {'cmd': <module at remote 0x903f584>, '__main__': <module at remote 0xb7791494>, 'start_pymol': <function at remote 0x9018f7c>, '_cmd': <module at remote 0xb748e644>, '__package__': None, 're': <module at remote 0xb77833bc>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0xb748e914>, '__doc__': None, 'math': <module at remote 0xb772547c>, 'string': <module at remote 0xb77256ec>, '__builtins__': <module at remote 0xb779111c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77912e4>, '_init_internals': <function at remote 0xb7733764>, 'copy': <module at remote 0xb7723df4>, 'glutThread': -1216538944, 'pymol_launch': 1, 'thread': <module at remote 0xb7723cbc>, 'thread_launch': <function at remote 0x909c02c>, '__name__': '__main__', 'traceback': <module at remote 0xb7791a1c>, 'pymol': <module at remote 0xb748e62c>, 'prime_pymol': <function at remote 0x9018f44>, 'threading': <module at remote 0xb7725...(truncated)
>        v = <optimized out>
>        ext = <optimized out>
>        set_file_name = 1
>        ret = <optimized out>
>        len = <optimized out>
>#71 0x483cf9a8 in PyRun_AnyFileExFlags (fp=fp@entry=0x8d4da68, filename=filename@entry=0xbfcfb83e "/usr/lib/python2.7/site-packages/pymol/__init__.py", closeit=closeit@entry=1, flags=flags@entry=0xbfcf957c) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:755
>No locals.
>#72 0x483e11e2 in Py_Main (argc=argc@entry=2, argv=argv@entry=0xbfcf96b4) at /usr/src/debug/Python-2.7.3/Modules/main.c:639
>        c = <optimized out>
>        sts = <optimized out>
>        command = 0x0
>        filename = 0xbfcfb83e "/usr/lib/python2.7/site-packages/pymol/__init__.py"
>        module = 0x0
>        fp = 0x8d4da68
>        p = <optimized out>
>        unbuffered = 0
>        skipfirstline = 0
>        stdin_is_interactive = 0
>        help = 1212682780
>        version = 1
>        saw_unbuffered_flag = 0
>        cf = {cf_flags = 0}
>#73 0x08048578 in main (argc=2, argv=0xbfcf96b4) at /usr/src/debug/Python-2.7.3/Modules/python.c:23
>No locals.
>From        To          Syms Read   Shared Object Library
>0x4830c020  0x483f8154  Yes         /lib/libpython2.7.so.1.0
>0x4436b6a0  0x44376e60  Yes         /lib/libpthread.so.0
>0x44360ad0  0x44361aec  Yes         /lib/libdl.so.2
>0x47a76a90  0x47a77540  Yes         /lib/libutil.so.1
>0x44337470  0x44351678  Yes         /lib/libm.so.6
>0x44195f20  0x442d602c  Yes         /lib/libc.so.6
>0x4415c850  0x44174ec7  Yes         /lib/ld-linux.so.2
>0x00ad70c0  0x00ad82e4  Yes         /usr/lib/python2.7/lib-dynload/timemodule.so
>0x00559e30  0x0055c904  Yes         /usr/lib/python2.7/lib-dynload/stropmodule.so
>0x0030d480  0x003105d0  Yes         /usr/lib/python2.7/lib-dynload/math.so
>0x00c92740  0x00ed95b4  Yes         /usr/lib/python2.7/site-packages/pymol/_cmd.so
>0x473378f0  0x4737f054  Yes         /lib/libGL.so.1
>0x473c9ea0  0x47425fa4  Yes         /lib/libGLU.so.1
>0x44438e20  0x4444bd04  Yes         /lib/libglut.so.3
>0x4482ed60  0x4484dc64  Yes         /lib/libpng15.so.15
>0x4438f6e0  0x4439ca7c  Yes         /lib/libz.so.1
>0x44a03610  0x44a72674  Yes         /lib/libfreetype.so.6
>0x468ea600  0x46911784  Yes         /lib/libGLEW.so.1.6
>0x446e0600  0x44752814  Yes         /lib/libstdc++.so.6
>0x443cc020  0x443e2b64  Yes         /lib/libgcc_s.so.1
>0x472bf3c0  0x472d4a1c  Yes         /lib/libglapi.so.0
>0x44787880  0x44792154  Yes         /lib/libXext.so.6
>0x472b4850  0x472b5214  Yes         /lib/libXdamage.so.1
>0x44823f70  0x448263cc  Yes         /lib/libXfixes.so.3
>0x472af430  0x472af584  Yes         /lib/libX11-xcb.so.1
>0x44542410  0x445d1984  Yes         /lib/libX11.so.6
>0x473100f0  0x473198e4  Yes         /lib/libxcb-glx.so.0
>0x44675f70  0x446864a4  Yes         /lib/libxcb.so.1
>0x472f1b90  0x472f4710  Yes         /lib/libXxf86vm.so.1
>0x472fb630  0x47301664  Yes         /lib/libdrm.so.2
>0x44ca78f0  0x44cb1f24  Yes         /lib/libXi.so.6
>0x443aa8e0  0x443bcd94  Yes         /lib/libselinux.so.1
>0x44668a60  0x4466992c  Yes         /lib/libXau.so.6
>0x44384920  0x4438845c  Yes         /lib/librt.so.1
>0x002267c0  0x002295d4  Yes         /usr/lib/python2.7/lib-dynload/_struct.so
>0x00c2faa0  0x00c31e50  Yes         /usr/lib/python2.7/lib-dynload/binascii.so
>0x0033cfd0  0x0033e020  Yes         /usr/lib/python2.7/lib-dynload/cStringIO.so
>0x001fc620  0x00207734  Yes         /usr/lib/python2.7/lib-dynload/cPickle.so
>0x00798fa0  0x00799da4  Yes         /usr/lib/python2.7/lib-dynload/_hashlib.so
>0x44cc5000  0x44cfc6f4  Yes         /lib/libssl.so.10
>0x44ad5f80  0x44bbf544  Yes         /lib/libcrypto.so.10
>0x44c31e90  0x44c62434  Yes         /lib/libgssapi_krb5.so.2
>0x4492aaf0  0x449adde4  Yes         /lib/libkrb5.so.3
>0x448a6f20  0x448a7ca4  Yes         /lib/libcom_err.so.2
>0x448e0b40  0x448fb224  Yes         /lib/libk5crypto.so.3
>0x443eb6b0  0x443f9e94  Yes         /lib/libresolv.so.2
>0x4490dee0  0x44913724  Yes         /lib/libkrb5support.so.0
>0x448d8d30  0x448d9a7c  Yes         /lib/libkeyutils.so.1
>0x0020dc40  0x0020e928  Yes         /usr/lib/python2.7/lib-dynload/_randommodule.so
>0x00213150  0x00215474  Yes         /usr/lib/python2.7/lib-dynload/operator.so
>0x00b7fd50  0x00b81a08  Yes         /usr/lib/python2.7/lib-dynload/zlibmodule.so
>0x0097b350  0x0098b1e4  Yes         /usr/lib/python2.7/lib-dynload/_io.so
>0x006739e0  0x006748d4  Yes         /usr/lib/python2.7/lib-dynload/fcntlmodule.so
>0x028e7790  0x02c292d4  Yes         /usr/lib/dri/nouveau_dri.so
>0x447a2090  0x447a5794  Yes         /lib/libffi.so.5
>0x448af1b0  0x448c8434  Yes         /lib/libexpat.so.1
>0x00729290  0x0072bd1c  Yes         /lib/libdrm_nouveau.so.1
>0x03966d20  0x046854b4  Yes         /usr/lib/llvm/libLLVM-3.0.so
>0x0021b540  0x0021dd34  Yes         /usr/lib/python2.7/lib-dynload/_collectionsmodule.so
>0x00536870  0x0053b70c  Yes         /usr/lib/python2.7/lib-dynload/itertoolsmodule.so
>0x00c2b780  0x00c2beb8  Yes         /usr/lib/python2.7/lib-dynload/_bisectmodule.so
>0x006238b0  0x00624a00  Yes         /usr/lib/python2.7/lib-dynload/_heapq.so
>0x004aa8a0  0x004b08a4  Yes         /usr/lib/python2.7/lib-dynload/_tkinter.so
>0x00279c70  0x002a952c  Yes         /usr/lib/tcl8.5/libTix.so
>0x45ff0ec0  0x460d06f8  Yes         /lib/libtk8.5.so
>0x45ed0bd0  0x45fa1c00  Yes         /lib/libtcl8.5.so
>0x461cffa0  0x461de104  Yes         /lib/libXft.so.2
>0x44c730e0  0x44c8e7e4  Yes         /lib/libfontconfig.so.1
>0x44d113c0  0x44d17264  Yes         /lib/libXrender.so.1
>0x0022fa40  0x00236e7c  Yes         /lib/libnss_files.so.2
>0x0023cdb0  0x00243304  Yes         /usr/lib/python2.7/lib-dynload/_socketmodule.so
>0x00221b20  0x00222590  Yes         /usr/lib/python2.7/lib-dynload/_functoolsmodule.so
>0x0024c280  0x0024f194  Yes         /usr/lib/python2.7/lib-dynload/_ssl.so
>0x44e88f60  0x44e8e484  Yes         /lib/libXcursor.so.1
>0x00256220  0x00257e94  Yes         /usr/lib/python2.7/lib-dynload/selectmodule.so
>$1 = 0xb74f9000 ""
>No symbol "__glib_assert_msg" in current context.
>eax            0x0	0
>ecx            0x4fc	1276
>edx            0x6	6
>ebx            0x4fc	1276
>esp            0xbfcf6f00	0xbfcf6f00
>ebp            0x99ff63c	0x99ff63c
>esi            0xb74f9000	-1219522560
>edi            0x4432cff4	1144180724
>eip            0xc62416	0xc62416 <__kernel_vsyscall+2>
>eflags         0x200206	[ PF IF ID ]
>cs             0x73	115
>ss             0x7b	123
>ds             0x7b	123
>es             0x7b	123
>fs             0x0	0
>gs             0x33	51
>Dump of assembler code for function __kernel_vsyscall:
>   0x00c62414 <+0>:	int    $0x80
>=> 0x00c62416 <+2>:	ret    
>End of assembler dump.

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Attachments on bug 864319: 623925 | 623926 | 623927 | 623928 | 623929 | 623930 | 623931 | 623932 | 623933