Attachment 693706 Details for Bug 908197 – File: backtrace

File: backtrace

backtrace (text/plain), 87.61 KB, created by Rajesh gazara on 2013-02-06 06:31:10 UTC

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Creator: Rajesh gazara

Created: 2013-02-06 06:31:10 UTC

Size: 87.61 KB

patch

obsolete

>warning: core file may not match specified executable file.
>[New LWP 5667]
>[New LWP 5668]
>[Thread debugging using libthread_db enabled]
>Using host libthread_db library "/lib64/libthread_db.so.1".
>Core was generated by `/usr/bin/python /usr/lib64/python2.7/site-packages/pymol/__init__.py /home/101/'.
>Program terminated with signal 6, Aborted.
>#0  0x0000003081e35ba5 in __GI_raise (sig=sig@entry=6) at ../nptl/sysdeps/unix/sysv/linux/raise.c:63
>63	  return INLINE_SYSCALL (tgkill, 3, pid, selftid, sig);
>
>Thread 2 (Thread 0x7fed318d9700 (LWP 5668)):
>#0  0x0000003081eeb793 in select () at ../sysdeps/unix/syscall-template.S:81
>No locals.
>#1  0x00007fed323b7674 in Sleep (milli=<optimized out>) at /usr/src/debug/Python-2.7.3/Modules/_tkinter.c:313
>        t = {tv_sec = 0, tv_usec = 4632}
>#2  0x00007fed323b788b in Tkapp_MainLoop (selfptr=<tkapp at remote 0x3327718>, args=<optimized out>) at /usr/src/debug/Python-2.7.3/Modules/_tkinter.c:2649
>        _save = 0x311c920
>        result = 0
>        threshold = 0
>        self = 0x3327718
>        tstate = 0x311c920
>#3  0x0000003083edd281 in call_function (oparg=<optimized out>, pp_stack=0x7fed318d7d28) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4098
>        callargs = (0,)
>        flags = <optimized out>
>        tstate = <optimized out>
>        func = <built-in method mainloop of tkapp object at remote 0x3327718>
>        w = <optimized out>
>        na = <optimized out>
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x7fed2c523338
>        x = <optimized out>
>#4  PyEval_EvalFrameEx (f=f@entry=Frame 0x7fed2c5231b0, for file /usr/lib64/python2.7/lib-tk/Tkinter.py, line 1017, in mainloop (self=<Tk(_tclCommands=['tkerror', 'exit', '53367664destroy', '140656627130448<lambda>', '140656627133888callit'], master=None, children={'53900928': <Frame(widgetName='frame', _w='.53900928', _tclCommands=[], _name='53900928', master=<...>, tk=<tkapp at remote 0x3327718>, children={'140656626450088': <Frame(widgetName='frame', _w='.53900928.140656626450088', _tclCommands=[], _name='140656626450088', master=<...>, tk=<tkapp at remote 0x3327718>, children={'140656626526112': <Frame(widgetName='frame', _w='.53900928.140656626450088.140656626526112', _tclCommands=[], _name='140656626526112', master=<...>, tk=<tkapp at remote 0x3327718>, children={'140656626527336': <Button(widgetName='button', _w='.53900928.140656626450088.140656626526112.140656626527336', _tclCommands=['140656626521904<lambda>'], _name='140656626527336', master=<...>, tk=<tkapp at remote 0x3327718>, children={}) at remote 0x7fed2c426c68>, '140656626527...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x7fed2c523340
>        stack_pointer = <optimized out>
>        next_instr = 0x309f923 "\001d\001"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7fed2c523328
>        freevars = 0x7fed2c523338
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x32b3a30
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x309f914 "|"
>        names = ('tk', 'mainloop')
>        consts = ('Call the mainloop of Tk.', None)
>#5  0x0000003083eddcbf in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=1, kws=0x7fed2c525dc0, kwcount=0, defs=0x3305168, defcount=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x311c920
>        x = <optimized out>
>        u = <optimized out>
>#6  0x0000003083edc2b3 in fast_function (nk=<optimized out>, na=1, n=<optimized out>, pp_stack=0x7fed318d7fd8, func=<function at remote 0x33049b0>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#7  call_function (oparg=<optimized out>, pp_stack=0x7fed318d7fd8) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x33049b0>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x7fed2c525db8
>        x = <optimized out>
>#8  PyEval_EvalFrameEx (f=f@entry=Frame 0x7fed2c525c20, for file /usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py, line 179, in run (self=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), skinNameList=['normal'], menuBar=<MenuBar(_MegaArchetype__componentAliases={}, _dynamicGroups=('Menu', 'Button'), _MegaArchetype__componentInfo={'Program-menu': (<Menu(widgetName='menu', _w='.54403944.54595312.54612192.54613704', _tclCommands=['54620560_resetHelpmessage'], _name='54613704', master=<Menu(widgetName='menu', _w='.54403944.54595312.54612192', _tclCommands=['54602640_resetHelpmessage', '54622480<lambda>', '54622640<lambda>', '140656625594688<lambda>', '140656625596128<lambda>', '140656625596208<lambda>', '140656625596288<lambda>', '140656625596368<lambda>', '140656625596448<lambda>', '140656625596528<lambda>', '140656625596608<lambda>', '140656625596688<lambda>', '140656625596768<lambda>'], _name='54612192', master=<Menubutton(widgetName='menubutton', _w='.54403944.54595312', _tclCommands=['54590992<lambda>', '5460...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x7fed2c525dc0
>        stack_pointer = <optimized out>
>        next_instr = 0x25e9d0c "\001|"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7fed2c525d98
>        freevars = 0x7fed2c525db8
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x30279b0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x25e9cb4 "|"
>        names = ('flush_fifo_once', 'time', 'root', 'update', 'sleep', 'mainloop', 'quit_app')
>        consts = (None, 1, -1, <float at remote 0x21de438>)
>#9  0x0000003083eddcbf in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=2, kws=0x7fed2c001090, kwcount=0, defs=0x3321268, defcount=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x311c920
>        x = <optimized out>
>        u = <optimized out>
>#10 0x0000003083edc2b3 in fast_function (nk=<optimized out>, na=2, n=<optimized out>, pp_stack=0x7fed318d8288, func=<function at remote 0x3368230>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#11 call_function (oparg=<optimized out>, pp_stack=0x7fed318d8288) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x3368230>
>        w = <optimized out>
>        na = 2
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x7fed2c001080
>        x = <optimized out>
>#12 PyEval_EvalFrameEx (f=f@entry=Frame 0x7fed2c000ef0, for file /usr/lib64/python2.7/site-packages/pmg_tk/__init__.py, line 35, in run (pymol_instance=<module at remote 0x7fed38896168>, poll=0, skin='normal'), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x7fed2c001090
>        stack_pointer = <optimized out>
>        next_instr = 0x3056f8a "\001Wn\021"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7fed2c001068
>        freevars = 0x7fed2c001080
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x7fed3888ccb0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x3056f54 "y8"
>        names = ('hasattr', 'sys', 'argv', 'PMGApp', 'run', 'traceback', 'print_exc')
>        consts = (None, 'argv', 'pymol')
>#13 0x0000003083eddcbf in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=args@entry=0x3066428, argcount=3, kws=kws@entry=0x7fed3ee24068, kwcount=kwcount@entry=0, defs=defs@entry=0x3307fe0, defcount=defcount@entry=2, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x311c920
>        x = <optimized out>
>        u = <optimized out>
>#14 0x0000003083e6da37 in function_call (func=<function at remote 0x3366a28>, arg=(<module at remote 0x7fed38896168>, 0, 'normal'), kw={}) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = ()
>        d = 0x3307fe0
>        k = 0x7fed3ee24068
>        nk = 0
>        nd = 2
>#15 0x0000003083e49c0e in PyObject_Call (func=func@entry=<function at remote 0x3366a28>, arg=<optimized out>, kw=kw@entry={}) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x3083e6d870 <function_call>
>#16 0x0000003083eda08b in ext_do_call (nk=0, na=<optimized out>, flags=<optimized out>, pp_stack=0x7fed318d8608, func=<function at remote 0x3366a28>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4411
>        kwdict = {}
>        nstar = 3
>        callargs = <optimized out>
>        stararg = (<module at remote 0x7fed38896168>, 0, 'normal')
>        result = 0x0
>#17 PyEval_EvalFrameEx (f=<optimized out>, throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2779
>        flags = <optimized out>
>        func = <function at remote 0x3366a28>
>        na = <optimized out>
>        nk = 0
>        n = <optimized out>
>        pfunc = 0x7fed2c000ea0
>        sp = 0x7fed2c000ea8
>        stack_pointer = <optimized out>
>        next_instr = 0x7fed3ed42c3d "\001n"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x7fed38882330
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x7fed3ed42c1c "z&"
>        names = ('_Thread__target', '_Thread__args', '_Thread__kwargs')
>        consts = (None,)
>#18 0x0000003083edcef1 in fast_function (nk=<optimized out>, na=1, n=<optimized out>, pp_stack=0x7fed318d8808, func=<function at remote 0x7fed38893668>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4184
>        retval = 0x0
>        i = <optimized out>
>        fastlocals = <optimized out>
>        f = <optimized out>
>        tstate = 0x311c920
>        stack = <optimized out>
>        co = <optimized out>
>        nd = 0
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = 0x0
>#19 call_function (oparg=<optimized out>, pp_stack=0x7fed318d8808) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x7fed38893668>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x7fed2c000c78
>        x = <optimized out>
>#20 PyEval_EvalFrameEx (f=<optimized out>, throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x7fed2c000c80
>        stack_pointer = <optimized out>
>        next_instr = 0x21cb43a "\001Wn\a\001\004t\016"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x7fed388824b0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x21cb394 "z\322\001|"
>        names = ('_set_ident', '_Thread__started', 'set', '_active_limbo_lock', '_active', '_Thread__ident', '_limbo', '_note', '_trace_hook', '_sys', 'settrace', '_profile_hook', 'setprofile', 'run', 'SystemExit', 'stderr', 'write', 'name', '_format_exc', '_Thread__exc_info', '_Thread__stderr', 'tb_frame', 'f_code', 'co_filename', 'tb_lineno', 'co_name', 'tb_next', '_Thread__exc_clear', '_Thread__stop', '_get_ident')
>        consts = (None, '%s.__bootstrap(): thread started', '%s.__bootstrap(): registering trace hook', '%s.__bootstrap(): registering profile hook', '%s.__bootstrap(): raised SystemExit', '%s.__bootstrap(): unhandled exception', 'Exception in thread %s:\n%s\n', 'Exception in thread ', ' (most likely raised during interpreter shutdown):', 'Traceback (most recent call last):', '  File "%s", line %s, in %s', '%s: %s', '%s.__bootstrap(): normal return')
>#21 0x0000003083edcef1 in fast_function (nk=<optimized out>, na=1, n=<optimized out>, pp_stack=0x7fed318d8a08, func=<function at remote 0x7fed388937d0>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4184
>        retval = 0x0
>        i = <optimized out>
>        fastlocals = <optimized out>
>        f = <optimized out>
>        tstate = 0x311c920
>        stack = <optimized out>
>        co = <optimized out>
>        nd = 0
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = 0x0
>#22 call_function (oparg=<optimized out>, pp_stack=0x7fed318d8a08) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x7fed388937d0>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x7fed2c000a90
>        x = <optimized out>
>#23 PyEval_EvalFrameEx (f=f@entry=Frame 0x7fed2c000910, for file /usr/lib64/python2.7/threading.py, line 524, in __bootstrap (self=<Thread(_Thread__ident=140656715339520, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5390>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5390>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5390>) at remote 0x3363fd0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5370>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5370>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5370>) at remote 0x3363f10>) at remote 0x3321a50>, _Thread__stderr=<module at remote 0x26aa328>, _Thread__target=<function at remote 0x3366a28>, _Thread__kwargs={},...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x7fed2c000a98
>        stack_pointer = <optimized out>
>        next_instr = 0x7fed38880240 "\001Wn#"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7fed2c000a88
>        freevars = 0x7fed2c000a90
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x7fed388823b0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x7fed38880234 "y\016"
>        names = ('_Thread__bootstrap_inner', '_Thread__daemonic', '_sys', 'None')
>        consts = (None,)
>#24 0x0000003083eddcbf in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=args@entry=0x26d3ba8, argcount=1, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x311c920
>        x = <optimized out>
>        u = <optimized out>
>#25 0x0000003083e6d926 in function_call (func=<function at remote 0x7fed388936e0>, arg=(<Thread(_Thread__ident=140656715339520, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5390>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5390>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5390>) at remote 0x3363fd0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5370>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5370>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5370>) at remote 0x3363f10>) at remote 0x3321a50>, _Thread__stderr=<module at remote 0x26aa328>, _Thread__target=<function at remote 0x3366a28>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0x7fed38896168>, 0, 'normal'), _Threa...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = 0x0
>        d = 0x0
>        k = 0x0
>        nk = 0
>        nd = 0
>#26 0x0000003083e49c0e in PyObject_Call (func=func@entry=<function at remote 0x7fed388936e0>, arg=arg@entry=(<Thread(_Thread__ident=140656715339520, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5390>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5390>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5390>) at remote 0x3363fd0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5370>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5370>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5370>) at remote 0x3363f10>) at remote 0x3321a50>, _Thread__stderr=<module at remote 0x26aa328>, _Thread__target=<function at remote 0x3366a28>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0x7fed38896168>, 0, 'normal'), _Threa...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x3083e6d870 <function_call>
>#27 0x0000003083e58200 in instancemethod_call (func=<function at remote 0x7fed388936e0>, arg=(<Thread(_Thread__ident=140656715339520, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5390>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5390>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5390>) at remote 0x3363fd0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5370>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5370>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5370>) at remote 0x3363f10>) at remote 0x3321a50>, _Thread__stderr=<module at remote 0x26aa328>, _Thread__target=<function at remote 0x3366a28>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0x7fed38896168>, 0, 'normal'), _Threa...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/classobject.c:2578
>        self = <Thread(_Thread__ident=140656715339520, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5390>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5390>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5390>) at remote 0x3363fd0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7fed3ede5370>, acquire=<built-in method acquire of thread.lock object at remote 0x7fed3ede5370>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7fed3ede5370>) at remote 0x3363f10>) at remote 0x3321a50>, _Thread__stderr=<module at remote 0x26aa328>, _Thread__target=<function at remote 0x3366a28>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0x7fed38896168>, 0, 'normal'), _Thread...(truncated)
>        klass = <optimized out>
>        result = <optimized out>
>#28 0x0000003083e49c0e in PyObject_Call (func=func@entry=<instancemethod at remote 0x32e2dc0>, arg=arg@entry=(), kw=<optimized out>) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x3083e58160 <instancemethod_call>
>#29 0x0000003083ed7367 in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0x32e2dc0>, arg=(), kw=<optimized out>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3967
>        result = <optimized out>
>#30 0x0000003083f0b802 in t_bootstrap (boot_raw=0x3155770) at /usr/src/debug/Python-2.7.3/Modules/threadmodule.c:614
>        boot = 0x3155770
>        tstate = 0x311c920
>        res = <optimized out>
>#31 0x0000003082607d15 in start_thread (arg=0x7fed318d9700) at pthread_create.c:308
>        __res = <optimized out>
>        pd = 0x7fed318d9700
>        now = <optimized out>
>        unwind_buf = {cancel_jmp_buf = {{jmp_buf = {140656715339520, 6169262692665437807, 0, 208335409152, 140656715339520, 0, -6176690597525148049, 6195998141612469871}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}}
>        not_first_call = 0
>        pagesize_m1 = <optimized out>
>        sp = <optimized out>
>        freesize = <optimized out>
>#32 0x0000003081ef246d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:114
>No locals.
>
>Thread 1 (Thread 0x7fed3ee64740 (LWP 5667)):
>#0  0x0000003081e35ba5 in __GI_raise (sig=sig@entry=6) at ../nptl/sysdeps/unix/sysv/linux/raise.c:63
>        resultvar = 0
>        pid = 5667
>        selftid = 5667
>#1  0x0000003081e37358 in __GI_abort () at abort.c:90
>        save_stage = 2
>        act = {__sigaction_handler = {sa_handler = 0x30821b1740 <main_arena>, sa_sigaction = 0x30821b1740 <main_arena>}, sa_mask = {__val = {208341246368, 45, 208409466672, 208409466672, 208337855954, 45, 208341246368, 45, 208337858654, 45, 208341246368, 1, 45, 41740128, 208337815069, 41740128}}, sa_flags = 0, sa_restorer = 0x3136f40}
>        sigs = {__val = {32, 0 <repeats 15 times>}}
>#2  0x0000003086260e1d in __gnu_cxx::__verbose_terminate_handler () at ../../../../libstdc++-v3/libsupc++/vterminate.cc:95
>        terminating = true
>        t = <optimized out>
>#3  0x000000308625eeb6 in __cxxabiv1::__terminate (handler=<optimized out>) at ../../../../libstdc++-v3/libsupc++/eh_terminate.cc:40
>No locals.
>#4  0x000000308625eee3 in std::terminate () at ../../../../libstdc++-v3/libsupc++/eh_terminate.cc:50
>No locals.
>#5  0x000000308625f9ff in __cxxabiv1::__cxa_pure_virtual () at ../../../../libstdc++-v3/libsupc++/pure.cc:50
>No locals.
>#6  0x00007fed34032eae in llvm::BumpPtrAllocator::DeallocateSlabs (this=0x3136f40, Slab=<optimized out>) at Allocator.cpp:71
>        NextSlab = 0x0
>#7  0x00007fed3421dfea in ~PredIteratorCache (this=0x3136f10, __in_chrg=<optimized out>) at /usr/src/debug/llvm-3.1.src/include/llvm/Support/PredIteratorCache.h:27
>No locals.
>#8  ~OwningPtr (this=0x30eaac8, __in_chrg=<optimized out>) at /usr/src/debug/llvm-3.1.src/include/llvm/ADT/OwningPtr.h:35
>No locals.
>#9  llvm::MemoryDependenceAnalysis::~MemoryDependenceAnalysis (this=0x30eaa00, __in_chrg=<optimized out>) at MemoryDependenceAnalysis.cpp:69
>No locals.
>#10 0x00007fed3421e249 in llvm::MemoryDependenceAnalysis::~MemoryDependenceAnalysis (this=0x30eaa00, __in_chrg=<optimized out>) at MemoryDependenceAnalysis.cpp:70
>No locals.
>#11 0x00007fed33f62df6 in llvm::PMDataManager::~PMDataManager (this=0x30eeb80, __in_chrg=<optimized out>) at PassManager.cpp:1222
>        I = 0x30eebd8
>        E = 0x30eebe8
>#12 0x00007fed33f68a02 in ~FPPassManager (this=0x30eeb60, __in_chrg=<optimized out>) at /usr/src/debug/llvm-3.1.src/include/llvm/PassManagers.h:408
>No locals.
>#13 llvm::FPPassManager::~FPPassManager (this=0x30eeb60, __in_chrg=<optimized out>) at /usr/src/debug/llvm-3.1.src/include/llvm/PassManagers.h:408
>No locals.
>#14 0x00007fed33f61f2e in llvm::PMTopLevelManager::~PMTopLevelManager (this=0x30ee9c0, __in_chrg=<optimized out>) at PassManager.cpp:759
>        I = 0x30eea00
>        E = 0x30eea08
>#15 0x00007fed33f68b43 in ~FunctionPassManagerImpl (this=0x30ee810, __in_chrg=<optimized out>) at PassManager.cpp:217
>No locals.
>#16 llvm::FunctionPassManagerImpl::~FunctionPassManagerImpl (this=0x30ee810, __in_chrg=<optimized out>) at PassManager.cpp:217
>No locals.
>#17 0x00007fed33f5f33e in llvm::FunctionPassManager::~FunctionPassManager (this=0x30f17c0, __in_chrg=<optimized out>) at PassManager.cpp:1338
>No locals.
>#18 0x00007fed33f5f3b9 in llvm::FunctionPassManager::~FunctionPassManager (this=0x30f17c0, __in_chrg=<optimized out>) at PassManager.cpp:1339
>No locals.
>#19 0x00007fed354ec325 in free_gallivm_state (gallivm=gallivm@entry=0x30e18a0) at gallivm/lp_bld_init.c:198
>        mod = 0x30f1640
>        error = 0x0
>#20 0x00007fed354ec6a9 in gallivm_destroy (gallivm=0x30e18a0) at gallivm/lp_bld_init.c:503
>No locals.
>#21 0x00007fed354d117f in draw_llvm_destroy_variant (variant=0x30e2870) at draw/draw_llvm.c:1427
>        llvm = 0x27f6ca0
>#22 0x00007fed354d159c in vs_llvm_delete (dvs=0x30e47a0) at draw/draw_vs_llvm.c:73
>        next = 0x30e4f48
>        shader = 0x30e47a0
>        li = <optimized out>
>#23 0x00007fed3535d710 in delete_vp_variant (vpv=0x30e1730, st=0x27dccb0, st=0x27dccb0) at ../../src/mesa/state_tracker/st_program.c:71
>No locals.
>#24 0x00007fed3535e58a in st_release_vp_variants (st=0x27dccb0, stvp=stvp@entry=0x3122010) at ../../src/mesa/state_tracker/st_program.c:93
>        next = 0x0
>        vpv = <optimized out>
>#25 0x00007fed35429e35 in st_delete_program (ctx=0x2770500, prog=0x3122010) at ../../src/mesa/state_tracker/st_cb_program.c:132
>        stvp = 0x3122010
>        st = <optimized out>
>#26 0x00007fed35364f5e in _mesa_reference_program_ (ctx=ctx@entry=0x2770500, ptr=ptr@entry=0x30e1a90, prog=prog@entry=0x0) at ../../src/mesa/program/program.c:457
>        deleteFlag = <optimized out>
>#27 0x00007fed353661d1 in _mesa_reference_program (prog=0x0, ptr=0x30e1a90, ctx=0x2770500) at program/program.h:102
>No locals.
>#28 clear_cache (ctx=ctx@entry=0x2770500, cache=cache@entry=0x27ce760, shader=shader@entry=0 '\000') at ../../src/mesa/program/prog_cache.c:125
>        c = 0x30e1a80
>        next = 0x30e31f0
>        i = 6
>#29 0x00007fed3536627b in _mesa_delete_program_cache (ctx=ctx@entry=0x2770500, cache=0x27ce760) at ../../src/mesa/program/prog_cache.c:158
>No locals.
>#30 0x00007fed353650db in _mesa_free_program_data (ctx=ctx@entry=0x2770500) at ../../src/mesa/program/program.c:139
>No locals.
>#31 0x00007fed352b737a in _mesa_free_context_data (ctx=ctx@entry=0x2770500) at ../../src/mesa/main/context.c:1133
>No locals.
>#32 0x00007fed3535b502 in st_destroy_context (st=0x27dccb0) at ../../src/mesa/state_tracker/st_context.c:312
>        pipe = 0x2742500
>        cso = 0x27f40f0
>        ctx = 0x2770500
>        i = 4
>#33 0x00007fed351ded8a in dri_destroy_context (cPriv=<optimized out>) at dri_context.c:183
>        ctx = 0x2742430
>#34 0x00007fed351daf23 in driDestroyContext (pcp=0x2767b50) at ../../../../src/mesa/drivers/dri/common/dri_util.c:328
>No locals.
>#35 0x000000308ae4b00c in dri2_destroy_context (context=0x2742290) at dri2_glx.c:132
>        pcp = 0x2742290
>        psc = 0x2716e70
>#36 0x000000308ae213e9 in glx_display_free (priv=priv@entry=0x2713ad0) at glxext.c:229
>        gc = <optimized out>
>#37 0x000000308ae21475 in __glXCloseDisplay (dpy=0x2722fb0, codes=<optimized out>) at glxext.c:276
>        priv = <optimized out>
>        prev = <optimized out>
>#38 0x000000308661fcc2 in XCloseDisplay (dpy=0x2722fb0) at ClDisplay.c:65
>        ext = 0x2716a00
>        i = <optimized out>
>#39 0x00007fed37736a27 in fgDeinitialize () at freeglut_init.c:520
>        timer = 0x0
>#40 fgDeinitialize () at freeglut_init.c:407
>No locals.
>#41 0x0000003081e38df1 in __run_exit_handlers (status=status@entry=0, listp=0x30821b16a8 <__exit_funcs>, run_list_atexit=run_list_atexit@entry=true) at exit.c:77
>        atfct = <optimized out>
>        onfct = <optimized out>
>        cxafct = <optimized out>
>        f = <optimized out>
>#42 0x0000003081e38e75 in __GI_exit (status=status@entry=0) at exit.c:99
>No locals.
>#43 0x00007fed37a248ee in PExit (G=G@entry=0x2716150, code=code@entry=0) at layer1/P.c:2510
>No locals.
>#44 0x00007fed37ba9a8b in CmdQuit (self=<PyCObject at remote 0x7fed3889d6e8>, args=<optimized out>) at layer4/Cmd.c:7131
>        G = 0x2716150
>        ok = 1
>#45 0x0000003083edd281 in call_function (oparg=<optimized out>, pp_stack=0x7fff68f35f78) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4098
>        callargs = (<PyCObject at remote 0x7fed3889d6e8>,)
>        flags = <optimized out>
>        tstate = <optimized out>
>        func = <built-in method quit of PyCObject object at remote 0x7fed3889d788>
>        w = <optimized out>
>        na = <optimized out>
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x34226a0
>        x = <optimized out>
>#46 PyEval_EvalFrameEx (f=f@entry=Frame 0x3422510, for file /usr/lib64/python2.7/site-packages/pymol/internal.py, line 529, in _quit (_self=<module at remote 0x7fed388adcc8>, pymol=<module at remote 0x7fed38896168>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x34226a8
>        stack_pointer = <optimized out>
>        next_instr = 0x7fed3ed57da7 "}\002"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x3422688
>        freevars = 0x34226a0
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x23377b0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x7fed3ed57d04 "|"
>        names = ('_pymol', 'lock', '_log_file', 'None', 'flush', 'close', 'reaper', 'join', '_cmd', 'quit', '_COb', 'unlock')
>        consts = (None, -1)
>#47 0x0000003083eddcbf in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=0, kws=0x371f390, kwcount=0, defs=0x2464628, defcount=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x20c80a0
>        x = <optimized out>
>        u = <optimized out>
>#48 0x0000003083edc2b3 in fast_function (nk=<optimized out>, na=0, n=<optimized out>, pp_stack=0x7fff68f36228, func=<function at remote 0x247a410>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#49 call_function (oparg=<optimized out>, pp_stack=0x7fff68f36228) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x247a410>
>        w = <optimized out>
>        na = 0
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x371f388
>        x = <optimized out>
>#50 PyEval_EvalFrameEx (f=f@entry=Frame 0x371f210, for file <string>, line 1, in <module> (), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x371f390
>        stack_pointer = <optimized out>
>        next_instr = 0x7fed2c4aac65 "\001d"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x371f388
>        freevars = 0x371f388
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x7fed2c2266b0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x7fed2c4aac5c "e"
>        names = ('cmd', '_quit')
>        consts = (None,)
>#51 0x0000003083eddcbf in PyEval_EvalCodeEx (co=co@entry=0x7fed2c2266b0, globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated), args=args@entry=0x0, argcount=argcount@entry=0, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x20c80a0
>        x = <optimized out>
>        u = <optimized out>
>#52 0x0000003083eddd92 in PyEval_EvalCode (co=co@entry=0x7fed2c2266b0, globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated)) at /usr/src/debug/Python-2.7.3/Python/ceval.c:689
>No locals.
>#53 0x0000003083ef6f7a in run_mod (mod=<optimized out>, filename=filename@entry=0x3083f1e9cd "<string>", globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated), flags=flags@entry=0x0, arena=arena@entry=0x3540f40) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1361
>        co = 0x7fed2c2266b0
>        v = <optimized out>
>#54 0x0000003083ef7b48 in PyRun_StringFlags (str=<optimized out>, start=start@entry=257, globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated), flags=0x0) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1324
>        ret = 0x0
>        mod = <optimized out>
>        arena = 0x3540f40
>#55 0x0000003083eda456 in exec_statement (locals={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated), globals={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1...(truncated), prog='cmd._quit()\n', f=Frame 0x36cff50, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 464, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22,...(truncated)) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4831
>        tmp = 0x0
>        str = 0x7fed2c216fdc "cmd._quit()\n"
>        cf = {cf_flags = 0}
>        n = <optimized out>
>        v = <optimized out>
>        plain = 0
>#56 PyEval_EvalFrameEx (f=f@entry=Frame 0x36cff50, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 464, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22,...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:1954
>        stack_pointer = 0x36d0190
>        next_instr = 0x24fd93f "q~\021|\003"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 35459792
>        x = None
>        v = None
>        w = None
>        u = ('cmd._quit()\n', {'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 1...(truncated)
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x36d00c8
>        freevars = 0x36d0190
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x24c4630
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x24fc7f4 "|"
>        names = ('layer', 'get', 'nest', 'None', 'result', 'embed_sentinel', 'string', 'strip', 'embed_type', 'len', 'embed_list', 'rstrip', 'join', 'pymol_names', 'traceback', 'print_exc', 'embed_line', 'append', 'com0', 'com1', 'str', 'cont', 'parsing', 'split', 'next', 'com2', 'input', 'py_delims', 'has_key', 'cmd', 'kwhash', 'interpret', 'type', 'types', 'StringType', 'sort', 'list_to_str_list', 'QuietException', 'keyword', 'kw', 'NO_CHECK', 'replace', 'LITERAL', 'SECURE', 'prepare_call', 'parse_arg', 'args', 'kw_args', 'apply', 'PYTHON', 'ABORT', 'MOVIE', 'count', 'remove', 'map', 'RUN', 'SPAWN', 'exp_path', 're', 'search', '_feedback', 'fb_module', 'parser', 'fb_mask', 'warnings', 'run_file_as_module', 'spawn_file', '__main__', '__dict__', 'run_file', 'sc_path', '_pymol', '__script__', 'EMBED', 'os', 'path', 'splitext', 'basename', 'embed_dict', 'SKIP', 'apply_arg', 'PYTHON_BLOCK', 'lower', 'open', 'script', 'NestLayer', 'readline', 'parse', 'get_setting_legacy', 'close', 'blather', 'CmdException')
>        consts = (None, 0, ' Embed: read %d lines.', 1, 'PyMOL>', '', 2, ' Skip: skipped %d lines.', '\n', '%5d:%s', -1, '\\', ';', ' ', '/', 'Error: Python expressions disallowed in this file.', 'Error: ambiguous command: ', 4, 'Error: Python expressions disallowed in this file.  ', 'Error: Command disallowed in this file.', 'mode', '_self', 'Error: Movie commands disallowed in this file. ', 3, '(', ')', ',', '\\.pml$', "Warning: use '@' instead of 'spawn' with PyMOL command scripts?", 'spawn', 'main', 'private', 'local', 'global', 'module', 'Error: spawn disallowed in this file.', "Warning: use '@' instead of 'run' with PyMOL command scripts?", 'Error: run disallowed in this file.', 'pdb', 'embed end', 'Error: embed only legal in special files (e.g. p1m)', 'sentinel', 'skip end', 'end', 'skip', 'python end', 'Error: Python blocks disallowed in this file.', 'Error: unknown keyword mode: ', 'Error: invalid arguments for %s command.', '@', -3, 'p1m', '\\.py$|\\.pym$', "Warning: use 'run' instead of '@' with Python files?", 'r'...(truncated)
>#57 0x0000003083eddcbf in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=3, kws=0x3420098, kwcount=0, defs=0x0, defcount=0, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x20c80a0
>        x = <optimized out>
>        u = <optimized out>
>#58 0x0000003083edc2b3 in fast_function (nk=<optimized out>, na=3, n=<optimized out>, pp_stack=0x7fff68f36828, func=<function at remote 0x24cad70>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#59 call_function (oparg=<optimized out>, pp_stack=0x7fff68f36828) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x24cad70>
>        w = <optimized out>
>        na = 3
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x3420080
>        x = <optimized out>
>#60 PyEval_EvalFrameEx (f=f@entry=Frame 0x341fe40, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 476, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22,...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x3420098
>        stack_pointer = <optimized out>
>        next_instr = 0x24fda1f "}\a"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x341ffb8
>        freevars = 0x3420080
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x24c4630
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x24fc7f4 "|"
>        names = ('layer', 'get', 'nest', 'None', 'result', 'embed_sentinel', 'string', 'strip', 'embed_type', 'len', 'embed_list', 'rstrip', 'join', 'pymol_names', 'traceback', 'print_exc', 'embed_line', 'append', 'com0', 'com1', 'str', 'cont', 'parsing', 'split', 'next', 'com2', 'input', 'py_delims', 'has_key', 'cmd', 'kwhash', 'interpret', 'type', 'types', 'StringType', 'sort', 'list_to_str_list', 'QuietException', 'keyword', 'kw', 'NO_CHECK', 'replace', 'LITERAL', 'SECURE', 'prepare_call', 'parse_arg', 'args', 'kw_args', 'apply', 'PYTHON', 'ABORT', 'MOVIE', 'count', 'remove', 'map', 'RUN', 'SPAWN', 'exp_path', 're', 'search', '_feedback', 'fb_module', 'parser', 'fb_mask', 'warnings', 'run_file_as_module', 'spawn_file', '__main__', '__dict__', 'run_file', 'sc_path', '_pymol', '__script__', 'EMBED', 'os', 'path', 'splitext', 'basename', 'embed_dict', 'SKIP', 'apply_arg', 'PYTHON_BLOCK', 'lower', 'open', 'script', 'NestLayer', 'readline', 'parse', 'get_setting_legacy', 'close', 'blather', 'CmdException')
>        consts = (None, 0, ' Embed: read %d lines.', 1, 'PyMOL>', '', 2, ' Skip: skipped %d lines.', '\n', '%5d:%s', -1, '\\', ';', ' ', '/', 'Error: Python expressions disallowed in this file.', 'Error: ambiguous command: ', 4, 'Error: Python expressions disallowed in this file.  ', 'Error: Command disallowed in this file.', 'mode', '_self', 'Error: Movie commands disallowed in this file. ', 3, '(', ')', ',', '\\.pml$', "Warning: use '@' instead of 'spawn' with PyMOL command scripts?", 'spawn', 'main', 'private', 'local', 'global', 'module', 'Error: spawn disallowed in this file.', "Warning: use '@' instead of 'run' with PyMOL command scripts?", 'Error: run disallowed in this file.', 'pdb', 'embed end', 'Error: embed only legal in special files (e.g. p1m)', 'sentinel', 'skip end', 'end', 'skip', 'python end', 'Error: Python blocks disallowed in this file.', 'Error: unknown keyword mode: ', 'Error: invalid arguments for %s command.', '@', -3, 'p1m', '\\.py$|\\.pym$', "Warning: use 'run' instead of '@' with Python files?", 'r'...(truncated)
>#61 0x0000003083eddcbf in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=3, kws=0x237d118, kwcount=0, defs=0x0, defcount=0, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x20c80a0
>        x = <optimized out>
>        u = <optimized out>
>#62 0x0000003083edc2b3 in fast_function (nk=<optimized out>, na=3, n=<optimized out>, pp_stack=0x7fff68f36ad8, func=<function at remote 0x24cad70>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#63 call_function (oparg=<optimized out>, pp_stack=0x7fff68f36ad8) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x24cad70>
>        w = <optimized out>
>        na = 3
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x237d100
>        x = <optimized out>
>#64 PyEval_EvalFrameEx (f=f@entry=Frame 0x237cf70, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 615, in <lambda> (s='time.sleep(0.100);cmd._quit()', secure=0, p=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7fed3ede5190>, _RLock__count=0) at remote 0x7fed388a62d0>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x7fed388a0dd0>, 'keyboard': <module at remote 0x2617f30>, 'keywords': <module at remote 0x25ea830>, 'start_pymol': <function at remote 0x7fed388a8668>, 'm4x': <module at remote 0x249ee88>, 'copy': <module at remote 0x7fed3ed63398>, 'feedingback': <module at remote 0x22b7558>, 'menu': <module at remote 0x3025de0>, 'wizard': <module at remote 0x7fed2c1d1088>, 'shortcut': <module at remote 0x7fed388b3328>, 'internal': <module at remote 0x22b7d70>, 'invocation': <module at remote 0x7fed388a3210>, 'string': <module at remote 0x7fed388968a0>, 'bonds': {'ILE...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x237d118
>        stack_pointer = <optimized out>
>        next_instr = 0x24b4f7b "S"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x237d0e8
>        freevars = 0x237d100
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x24c72b0
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x24b4f6c "|\002"
>        names = ('parse',)
>        consts = (None,)
>#65 0x0000003083eddcbf in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=args@entry=0x7fed2c4e41d0, argcount=2, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x26d3c28, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x20c80a0
>        x = <optimized out>
>        u = <optimized out>
>#66 0x0000003083e6d926 in function_call (func=<function at remote 0x3056de8>, arg=('time.sleep(0.100);cmd._quit()', 0), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = 0x0
>        d = 0x26d3c28
>        k = 0x0
>        nk = 0
>        nd = 1
>#67 0x0000003083e49c0e in PyObject_Call (func=func@entry=<function at remote 0x3056de8>, arg=arg@entry=('time.sleep(0.100);cmd._quit()', 0), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x3083e6d870 <function_call>
>#68 0x0000003083e49cf1 in call_function_tail (callable=<function at remote 0x3056de8>, args=('time.sleep(0.100);cmd._quit()', 0)) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2561
>        retval = <optimized out>
>#69 0x0000003083e49dbe in PyObject_CallFunction (callable=<function at remote 0x3056de8>, format=format@entry=0x7fed37bfa7a6 "si") at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2585
>        va = {{gp_offset = 16, fp_offset = 48, overflow_arg_area = 0x7fff68f36db0, reg_save_area = 0x7fff68f36cf0}}
>        args = <optimized out>
>#70 0x00007fed37a24b8d in PFlush (G=G@entry=0x2716150) at layer1/P.c:2628
>        err = <optimized out>
>        buffer = "time.sleep(0.100);cmd._quit()\000\000\000\230\071N,\355\177\000\000\250\324,\002\000\000\000\000\001\000\000\000\000\000\000\000@\301+\002\000\000\000\000\240\200\f\002\000\000\000\000\240>\030\204\060\000\000\000\060\373*\002\000\000\000\000\000\000\000\000\060\000\000\000\240\200\f\002\000\000\000\000\240>\030\204\060\000\000\000\060\373*\002", '\000' <repeats 12 times>"\200, \217,\002\000\000\000\000\240>\030\204\060\000\000\000\240>\030\204\060\000\000\000P\277\060\002\000\000\000\000\377\377\377\377\001\000\000\000\310\212\260\270i\225\fb\370\203\323>\355\177\000\000\020^*\002\000\000\000\000\000\000\000\000\377\377\377\377\000\353\377\002\000\000\000\000\320\204\323>\355\177\000\000\220\320,\002\000\000\000\000\000\000\000\000\377\377\377\377\220\242\373\002\000\000\000\000\060\373*\002\000\000\000\000\060\373*\002\000\000\000\000\b:"...
>        did_work = 1
>#71 0x00007fed37bd03c0 in PyMOL_Idle (I=0x2714800) at layer5/PyMOL.c:4023
>        G = 0x2716150
>        did_work = 0
>#72 0x00007fed37bd1fc5 in MainBusyIdle () at layer5/main.c:1465
>        G = 0x2716150
>        I = 0x27e6b80
>#73 0x00007fed37739a9a in glutMainLoop () at freeglut_main.c:1554
>        window = <optimized out>
>        action = <optimized out>
>#74 0x00007fed37bd3d0d in launch (options=0x2714370, own_the_options=<optimized out>) at layer5/main.c:1955
>        I = 0x27e6b80
>        multisample_mask = <optimized out>
>        theWindow = 1
>        G = 0x2716150
>        own_the_options = 1
>#75 was_main () at layer5/main.c:2006
>        options = 0x2714370
>#76 0x00007fed37ba0fcf in CmdRunPyMOL (self=<PyCObject at remote 0x7fed3889d6c0>, args=<optimized out>) at layer4/Cmd.c:4771
>        block_input_hook = 0
>#77 0x0000003083edd281 in call_function (oparg=<optimized out>, pp_stack=0x7fff68f37738) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4098
>        callargs = (<PyCObject at remote 0x7fed3889d6c0>, 0)
>        flags = <optimized out>
>        tstate = <optimized out>
>        func = <built-in method runpymol of PyCObject object at remote 0x7fed3889d788>
>        w = <optimized out>
>        na = <optimized out>
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x2714158
>        x = <optimized out>
>#78 PyEval_EvalFrameEx (f=f@entry=Frame 0x2713fd0, for file /usr/lib64/python2.7/site-packages/pymol/__init__.py, line 470, in start_pymol (block_input_hook=0, _COb=<PyCObject at remote 0x7fed3889d6c0>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x2714160
>        stack_pointer = <optimized out>
>        next_instr = 0x7fed3ed46ca6 "\001d"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x2714148
>        freevars = 0x2714158
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x7fed3ed4c730
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x7fed3ed46c84 "t"
>        names = ('prime_pymol', '_cmd', '_get_global_C_object', 'runpymol')
>        consts = (None,)
>#79 0x0000003083eddcbf in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=1, kws=0x21c0e18, kwcount=0, defs=0x7fed38899da8, defcount=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x20c80a0
>        x = <optimized out>
>        u = <optimized out>
>#80 0x0000003083edc2b3 in fast_function (nk=<optimized out>, na=1, n=<optimized out>, pp_stack=0x7fff68f379e8, func=<function at remote 0x26a68c0>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#81 call_function (oparg=<optimized out>, pp_stack=0x7fff68f379e8) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119
>        func = <function at remote 0x26a68c0>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x21c0e08
>        x = <optimized out>
>#82 PyEval_EvalFrameEx (f=f@entry=Frame 0x21c0c90, for file /usr/lib64/python2.7/site-packages/pymol/__init__.py, line 491, in <module> (), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740
>        sp = 0x21c0e18
>        stack_pointer = <optimized out>
>        next_instr = 0x21cdc8a "\001n\250"
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x21c0e08
>        freevars = 0x21c0e08
>        retval = 0x0
>        tstate = <optimized out>
>        co = 0x7fed3ed65030
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = 0x21cd6b4 "d"
>        names = ('copy', '__main__', '__name__', 'invocation', '_init_internals', 'hasattr', 'pymol_launch', 'thread', 'threading', 'os', 'sys', 're', 'string', 'time', 'traceback', 'math', 'environ', 'has_key', '__file__', 'pymol_file', 'getcwd', 'sub', 'pymol_path', 'path', 'isdir', 'NameError', 'argv', 'pymol_argv', 'try_again', 'pymol', 'ImportError', 'exc_clear', 'insert', 'dirname', 'globals', 'None', '_once', 'CmdException', 'Scratch_Storage', 'Session_Storage', 'modules', 'platform', 'loc2', 'exists', 'loc1', 'setcheckinterval', 'join', 'test_path', 'freemol_libpy', 'append', 'exec_str', 'exec_deferred', 'adapt_to_hardware', 'launch_gui', 'prime_pymol', 'start_pymol', '_cmd', 'cmd', 'thread_launch', '_get_global_C_object', '_COb', 'parse_args', 'xwin', 'finish_launching')
>        consts = (-1, None, '__main__', <code at remote 0x7fed3eda6a30>, 'pymol_launch', 2, 3, 'PYMOL_PATH', 0, 1, '\\', '/', ':', '[\\/\\\\][^\\/\\\\]*$', '', '[\\/\\\\]modules[\\/\\\\]pymol[\\/\\\\]__init__\\.py[c]*$', 'pymol_argv', 'pymol', '-q', 4, '_once', 'CmdException', <code at remote 0x7fed3ed3bbb0>, 'Scratch_Storage', <code at remote 0x7fed3ed3b130>, 'Session_Storage', <code at remote 0x7fed3ed3b4b0>, 'win32', '/modules', '/modules/numeric', 'FREEMOL', 'freemol', 'libpy', <code at remote 0x7fed3ed3bc30>, <code at remote 0x7fed3ed3e1b0>, <code at remote 0x7fed3ed3e930>, <code at remote 0x7fed3ed4ce30>, <code at remote 0x7fed3ed4c0b0>, <code at remote 0x7fed3ed4c730>, <code at remote 0x7fed3ed4ceb0>, ('invocation',), 'DISPLAY', ('*',), <code at remote 0x7fed3ed4cf30>, ('\\', '/'), (), (...), (...))
>#83 0x0000003083eddcbf in PyEval_EvalCodeEx (co=co@entry=0x7fed3ed65030, globals=globals@entry={'cmd': <module at remote 0x26aa398>, '__main__': <module at remote 0x7fed3ee58c20>, 'start_pymol': <function at remote 0x26a68c0>, '_cmd': <module at remote 0x7fed388967c0>, '__package__': None, 're': <module at remote 0x7fed3ed9f248>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py', '/home/101/Documents/Rajesh/MGLToolsPckgs/AutoDockTools/Utilities24/ArOYE_YqjM_FMN2.B99990003.pdb'], 'invocation': <module at remote 0x7fed388a3210>, '__doc__': None, 'math': <module at remote 0x7fed3887dec0>, 'string': <module at remote 0x7fed388968a0>, '__builtins__': <module at remote 0x7fed3ee24ad0>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0x7fed3ee24b78>, '_init_internals': <function at remote 0x7fed388888c0>, 'copy': <module at remote 0x7fed3ed63398>, 'glutThread': 140656939255616, 'pymol_launch': 1, 'thread': <module at remote 0x7fed3ed639f0>, 'thread_launch': <function at remote 0x26a69b0>, '__name__': '__main__', 'traceback': <mod...(truncated), locals=locals@entry={'cmd': <module at remote 0x26aa398>, '__main__': <module at remote 0x7fed3ee58c20>, 'start_pymol': <function at remote 0x26a68c0>, '_cmd': <module at remote 0x7fed388967c0>, '__package__': None, 're': <module at remote 0x7fed3ed9f248>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py', '/home/101/Documents/Rajesh/MGLToolsPckgs/AutoDockTools/Utilities24/ArOYE_YqjM_FMN2.B99990003.pdb'], 'invocation': <module at remote 0x7fed388a3210>, '__doc__': None, 'math': <module at remote 0x7fed3887dec0>, 'string': <module at remote 0x7fed388968a0>, '__builtins__': <module at remote 0x7fed3ee24ad0>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0x7fed3ee24b78>, '_init_internals': <function at remote 0x7fed388888c0>, 'copy': <module at remote 0x7fed3ed63398>, 'glutThread': 140656939255616, 'pymol_launch': 1, 'thread': <module at remote 0x7fed3ed639f0>, 'thread_launch': <function at remote 0x26a69b0>, '__name__': '__main__', 'traceback': <mod...(truncated), args=args@entry=0x0, argcount=argcount@entry=0, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330
>        f = <optimized out>
>        retval = 0x0
>        fastlocals = <optimized out>
>        freevars = <optimized out>
>        tstate = 0x20c80a0
>        x = <optimized out>
>        u = <optimized out>
>#84 0x0000003083eddd92 in PyEval_EvalCode (co=co@entry=0x7fed3ed65030, globals=globals@entry={'cmd': <module at remote 0x26aa398>, '__main__': <module at remote 0x7fed3ee58c20>, 'start_pymol': <function at remote 0x26a68c0>, '_cmd': <module at remote 0x7fed388967c0>, '__package__': None, 're': <module at remote 0x7fed3ed9f248>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py', '/home/101/Documents/Rajesh/MGLToolsPckgs/AutoDockTools/Utilities24/ArOYE_YqjM_FMN2.B99990003.pdb'], 'invocation': <module at remote 0x7fed388a3210>, '__doc__': None, 'math': <module at remote 0x7fed3887dec0>, 'string': <module at remote 0x7fed388968a0>, '__builtins__': <module at remote 0x7fed3ee24ad0>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0x7fed3ee24b78>, '_init_internals': <function at remote 0x7fed388888c0>, 'copy': <module at remote 0x7fed3ed63398>, 'glutThread': 140656939255616, 'pymol_launch': 1, 'thread': <module at remote 0x7fed3ed639f0>, 'thread_launch': <function at remote 0x26a69b0>, '__name__': '__main__', 'traceback': <mod...(truncated), locals=locals@entry={'cmd': <module at remote 0x26aa398>, '__main__': <module at remote 0x7fed3ee58c20>, 'start_pymol': <function at remote 0x26a68c0>, '_cmd': <module at remote 0x7fed388967c0>, '__package__': None, 're': <module at remote 0x7fed3ed9f248>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py', '/home/101/Documents/Rajesh/MGLToolsPckgs/AutoDockTools/Utilities24/ArOYE_YqjM_FMN2.B99990003.pdb'], 'invocation': <module at remote 0x7fed388a3210>, '__doc__': None, 'math': <module at remote 0x7fed3887dec0>, 'string': <module at remote 0x7fed388968a0>, '__builtins__': <module at remote 0x7fed3ee24ad0>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0x7fed3ee24b78>, '_init_internals': <function at remote 0x7fed388888c0>, 'copy': <module at remote 0x7fed3ed63398>, 'glutThread': 140656939255616, 'pymol_launch': 1, 'thread': <module at remote 0x7fed3ed639f0>, 'thread_launch': <function at remote 0x26a69b0>, '__name__': '__main__', 'traceback': <mod...(truncated)) at /usr/src/debug/Python-2.7.3/Python/ceval.c:689
>No locals.
>#85 0x0000003083ef6f7a in run_mod (mod=<optimized out>, filename=filename@entry=0x7fff68f38967 "/usr/lib64/python2.7/site-packages/pymol/__init__.py", globals=globals@entry={'cmd': <module at remote 0x26aa398>, '__main__': <module at remote 0x7fed3ee58c20>, 'start_pymol': <function at remote 0x26a68c0>, '_cmd': <module at remote 0x7fed388967c0>, '__package__': None, 're': <module at remote 0x7fed3ed9f248>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py', '/home/101/Documents/Rajesh/MGLToolsPckgs/AutoDockTools/Utilities24/ArOYE_YqjM_FMN2.B99990003.pdb'], 'invocation': <module at remote 0x7fed388a3210>, '__doc__': None, 'math': <module at remote 0x7fed3887dec0>, 'string': <module at remote 0x7fed388968a0>, '__builtins__': <module at remote 0x7fed3ee24ad0>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0x7fed3ee24b78>, '_init_internals': <function at remote 0x7fed388888c0>, 'copy': <module at remote 0x7fed3ed63398>, 'glutThread': 140656939255616, 'pymol_launch': 1, 'thread': <module at remote 0x7fed3ed639f0>, 'thread_launch': <function at remote 0x26a69b0>, '__name__': '__main__', 'traceback': <mod...(truncated), locals=locals@entry={'cmd': <module at remote 0x26aa398>, '__main__': <module at remote 0x7fed3ee58c20>, 'start_pymol': <function at remote 0x26a68c0>, '_cmd': <module at remote 0x7fed388967c0>, '__package__': None, 're': <module at remote 0x7fed3ed9f248>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py', '/home/101/Documents/Rajesh/MGLToolsPckgs/AutoDockTools/Utilities24/ArOYE_YqjM_FMN2.B99990003.pdb'], 'invocation': <module at remote 0x7fed388a3210>, '__doc__': None, 'math': <module at remote 0x7fed3887dec0>, 'string': <module at remote 0x7fed388968a0>, '__builtins__': <module at remote 0x7fed3ee24ad0>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0x7fed3ee24b78>, '_init_internals': <function at remote 0x7fed388888c0>, 'copy': <module at remote 0x7fed3ed63398>, 'glutThread': 140656939255616, 'pymol_launch': 1, 'thread': <module at remote 0x7fed3ed639f0>, 'thread_launch': <function at remote 0x26a69b0>, '__name__': '__main__', 'traceback': <mod...(truncated), flags=flags@entry=0x7fff68f37c60, arena=arena@entry=0x21663b0) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1361
>        co = 0x7fed3ed65030
>        v = <optimized out>
>#86 0x0000003083ef7d72 in PyRun_FileExFlags (fp=fp@entry=0x21667b0, filename=filename@entry=0x7fff68f38967 "/usr/lib64/python2.7/site-packages/pymol/__init__.py", start=start@entry=257, globals=globals@entry={'cmd': <module at remote 0x26aa398>, '__main__': <module at remote 0x7fed3ee58c20>, 'start_pymol': <function at remote 0x26a68c0>, '_cmd': <module at remote 0x7fed388967c0>, '__package__': None, 're': <module at remote 0x7fed3ed9f248>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py', '/home/101/Documents/Rajesh/MGLToolsPckgs/AutoDockTools/Utilities24/ArOYE_YqjM_FMN2.B99990003.pdb'], 'invocation': <module at remote 0x7fed388a3210>, '__doc__': None, 'math': <module at remote 0x7fed3887dec0>, 'string': <module at remote 0x7fed388968a0>, '__builtins__': <module at remote 0x7fed3ee24ad0>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0x7fed3ee24b78>, '_init_internals': <function at remote 0x7fed388888c0>, 'copy': <module at remote 0x7fed3ed63398>, 'glutThread': 140656939255616, 'pymol_launch': 1, 'thread': <module at remote 0x7fed3ed639f0>, 'thread_launch': <function at remote 0x26a69b0>, '__name__': '__main__', 'traceback': <mod...(truncated), locals=locals@entry={'cmd': <module at remote 0x26aa398>, '__main__': <module at remote 0x7fed3ee58c20>, 'start_pymol': <function at remote 0x26a68c0>, '_cmd': <module at remote 0x7fed388967c0>, '__package__': None, 're': <module at remote 0x7fed3ed9f248>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py', '/home/101/Documents/Rajesh/MGLToolsPckgs/AutoDockTools/Utilities24/ArOYE_YqjM_FMN2.B99990003.pdb'], 'invocation': <module at remote 0x7fed388a3210>, '__doc__': None, 'math': <module at remote 0x7fed3887dec0>, 'string': <module at remote 0x7fed388968a0>, '__builtins__': <module at remote 0x7fed3ee24ad0>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0x7fed3ee24b78>, '_init_internals': <function at remote 0x7fed388888c0>, 'copy': <module at remote 0x7fed3ed63398>, 'glutThread': 140656939255616, 'pymol_launch': 1, 'thread': <module at remote 0x7fed3ed639f0>, 'thread_launch': <function at remote 0x26a69b0>, '__name__': '__main__', 'traceback': <mod...(truncated), closeit=closeit@entry=1, flags=flags@entry=0x7fff68f37c60) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1347
>        ret = <optimized out>
>        mod = <optimized out>
>        arena = 0x21663b0
>#87 0x0000003083ef878b in PyRun_SimpleFileExFlags (fp=fp@entry=0x21667b0, filename=0x7fff68f38967 "/usr/lib64/python2.7/site-packages/pymol/__init__.py", closeit=1, flags=flags@entry=0x7fff68f37c60) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:951
>        m = <optimized out>
>        d = {'cmd': <module at remote 0x26aa398>, '__main__': <module at remote 0x7fed3ee58c20>, 'start_pymol': <function at remote 0x26a68c0>, '_cmd': <module at remote 0x7fed388967c0>, '__package__': None, 're': <module at remote 0x7fed3ed9f248>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py', '/home/101/Documents/Rajesh/MGLToolsPckgs/AutoDockTools/Utilities24/ArOYE_YqjM_FMN2.B99990003.pdb'], 'invocation': <module at remote 0x7fed388a3210>, '__doc__': None, 'math': <module at remote 0x7fed3887dec0>, 'string': <module at remote 0x7fed388968a0>, '__builtins__': <module at remote 0x7fed3ee24ad0>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0x7fed3ee24b78>, '_init_internals': <function at remote 0x7fed388888c0>, 'copy': <module at remote 0x7fed3ed63398>, 'glutThread': 140656939255616, 'pymol_launch': 1, 'thread': <module at remote 0x7fed3ed639f0>, 'thread_launch': <function at remote 0x26a69b0>, '__name__': '__main__', 'traceback': <mod...(truncated)
>        v = <optimized out>
>        ext = <optimized out>
>        set_file_name = 1
>        ret = <optimized out>
>        len = <optimized out>
>#88 0x0000003083ef93c9 in PyRun_AnyFileExFlags (fp=fp@entry=0x21667b0, filename=<optimized out>, closeit=<optimized out>, flags=flags@entry=0x7fff68f37c60) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:755
>No locals.
>#89 0x0000003083f09c52 in Py_Main (argc=<optimized out>, argv=<optimized out>) at /usr/src/debug/Python-2.7.3/Modules/main.c:639
>        c = <optimized out>
>        sts = <optimized out>
>        command = 0x0
>        filename = 0x7fff68f38967 "/usr/lib64/python2.7/site-packages/pymol/__init__.py"
>        module = 0x0
>        fp = 0x21667b0
>        p = <optimized out>
>        unbuffered = 0
>        skipfirstline = 0
>        stdin_is_interactive = 0
>        help = <optimized out>
>        version = <optimized out>
>        saw_unbuffered_flag = <optimized out>
>        cf = {cf_flags = 0}
>#90 0x0000003081e21a05 in __libc_start_main (main=0x4006f0 <main>, argc=3, ubp_av=0x7fff68f37e18, init=<optimized out>, fini=<optimized out>, rtld_fini=<optimized out>, stack_end=0x7fff68f37e08) at libc-start.c:225
>        result = <optimized out>
>        unwind_buf = {cancel_jmp_buf = {{jmp_buf = {0, 6169262692665437807, 4196088, 140734954176016, 0, 0, -6169000901602922897, 6195999259467099759}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x3081a0eff0 <_dl_init+160>, 0x158abf}, data = {prev = 0x0, cleanup = 0x0, canceltype = -2120159248}}}
>        not_first_call = <optimized out>
>#91 0x0000000000400721 in _start ()
>No symbol table info available.
>From                To                  Syms Read   Shared Object Library
>0x0000003083e3f170  0x0000003083f1e820  Yes         /lib64/libpython2.7.so.1.0
>0x0000003082605790  0x00000030826104b4  Yes         /lib64/libpthread.so.0
>0x0000003082200ed0  0x00000030822019f0  Yes         /lib64/libdl.so.2
>0x000000309ba00f10  0x000000309ba01824  Yes         /lib64/libutil.so.1
>0x00000030832055b0  0x000000308326fd68  Yes         /lib64/libm.so.6
>0x0000003081e1f1a0  0x0000003081f60940  Yes         /lib64/libc.so.6
>0x0000003081a00b20  0x0000003081a1a3d9  Yes         /lib64/ld-linux-x86-64.so.2
>0x00007fed38675af0  0x00007fed38676b48  Yes         /usr/lib64/python2.7/lib-dynload/timemodule.so
>0x00007fed3846e750  0x00007fed38470df4  Yes         /usr/lib64/python2.7/lib-dynload/stropmodule.so
>0x00007fed382664e0  0x00007fed382696e4  Yes         /usr/lib64/python2.7/lib-dynload/math.so
>0x00007fed379a9cc0  0x00007fed37bd430c  Yes         /usr/lib64/python2.7/site-packages/pymol/_cmd.so
>0x000000308ae1bc20  0x000000308ae65ca0  Yes         /lib64/libGL.so.1
>0x0000003082e04ab0  0x0000003082e60278  Yes         /lib64/libGLU.so.1
>0x00007fed3772e970  0x00007fed3773f88c  Yes         /lib64/libglut.so.3
>0x0000003089604fe0  0x0000003089620b50  Yes         /lib64/libpng15.so.15
>0x00007fed37503190  0x00007fed3750f640  Yes         /lib64/libz.so.1
>0x000000308a60cc80  0x000000308a676f30  Yes         /lib64/libfreetype.so.6
>0x00007fed372b6f40  0x00007fed372e799c  Yes         /lib64/libGLEW.so.1.7
>0x000000308625bb80  0x00000030862c10bb  Yes         /lib64/libstdc++.so.6
>0x0000003084202a40  0x0000003084212168  Yes         /lib64/libgcc_s.so.1
>0x000000308ee1deb0  0x000000308ee3175c  Yes         /lib64/libglapi.so.0
>0x0000003087603740  0x000000308760d810  Yes         /lib64/libXext.so.6
>0x000000308b600bd0  0x000000308b6015ec  Yes         /lib64/libXdamage.so.1
>0x000000308f201530  0x000000308f203da8  Yes         /lib64/libXfixes.so.3
>0x0000003089e00600  0x0000003089e006fc  Yes         /lib64/libX11-xcb.so.1
>0x000000308661dee0  0x00000030866a4280  Yes         /lib64/libX11.so.6
>0x000000308d209fb0  0x000000308d2101d8  Yes         /lib64/libxcb-glx.so.0
>0x0000003085e09a00  0x0000003085e158f8  Yes         /lib64/libxcb.so.1
>0x0000003088600f90  0x00000030886039bc  Yes         /lib64/libXxf86vm.so.1
>0x0000003091e031d0  0x0000003091e07ff4  Yes         /lib64/libdrm.so.2
>0x0000003083a06170  0x0000003083a175d4  Yes         /lib64/libselinux.so.1
>0x0000003089a02160  0x0000003089a0bfc4  Yes         /lib64/libXi.so.6
>0x0000003086a00eb0  0x0000003086a01bcc  Yes         /lib64/libXau.so.6
>0x0000003082a022a0  0x0000003082a0557c  Yes         /lib64/librt.so.1
>0x0000003083601db0  0x00000030836452e8  Yes         /lib64/libpcre.so.1
>0x00007fed3707a810  0x00007fed3707cf30  Yes         /usr/lib64/python2.7/lib-dynload/_struct.so
>0x00007fed36e731d0  0x00007fed36e750ec  Yes         /usr/lib64/python2.7/lib-dynload/binascii.so
>0x00007fed36c6dbe0  0x00007fed36c6e97c  Yes         /usr/lib64/python2.7/lib-dynload/cStringIO.so
>0x00007fed36a5ca30  0x00007fed36a6739c  Yes         /usr/lib64/python2.7/lib-dynload/cPickle.so
>0x00007fed36856910  0x00007fed368574c8  Yes         /usr/lib64/python2.7/lib-dynload/_hashlib.so
>0x000000309ce16f30  0x000000309ce4d074  Yes         /lib64/libssl.so.10
>0x0000003099a61fc0  0x0000003099b44af8  Yes         /lib64/libcrypto.so.10
>0x0000003098e0ad90  0x0000003098e38264  Yes         /lib64/libgssapi_krb5.so.2
>0x000000309821b690  0x0000003098293410  Yes         /lib64/libkrb5.so.3
>0x0000003097601560  0x0000003097602144  Yes         /lib64/libcom_err.so.2
>0x00000030986044d0  0x000000309861c938  Yes         /lib64/libk5crypto.so.3
>0x0000003097e02b50  0x0000003097e080cc  Yes         /lib64/libkrb5support.so.0
>0x0000003098a01190  0x0000003098a01b44  Yes         /lib64/libkeyutils.so.1
>0x00007fed3663fa30  0x00007fed3664e00c  Yes         /lib64/libresolv.so.2
>0x00007fed364392a0  0x00007fed36439ed8  Yes         /usr/lib64/python2.7/lib-dynload/_randommodule.so
>0x00007fed36232070  0x00007fed36233af4  Yes         /usr/lib64/python2.7/lib-dynload/operator.so
>0x00007fed35ea7510  0x00007fed35ea8f80  Yes         /usr/lib64/python2.7/lib-dynload/zlibmodule.so
>0x00007fed35c89ac0  0x00007fed35c985d0  Yes         /usr/lib64/python2.7/lib-dynload/_io.so
>0x00007fed35a7ee60  0x00007fed35a7fb54  Yes         /usr/lib64/python2.7/lib-dynload/fcntlmodule.so
>0x00007fed351d8730  0x00007fed3550266c  Yes         /usr/lib64/dri/nouveau_dri.so
>0x0000003084e01990  0x0000003084e06134  Yes         /lib64/libffi.so.5
>0x0000003089203e00  0x000000308921ccdc  Yes         /lib64/libexpat.so.1
>0x00007fed34f998d0  0x00007fed34f9c320  Yes         /lib64/libdrm_nouveau.so.2
>0x00007fed33c0a9f0  0x00007fed34831fd0  Yes         /usr/lib64/llvm/libLLVM-3.1.so
>0x00007fed32bda3b0  0x00007fed32bdc8fc  Yes         /usr/lib64/python2.7/lib-dynload/_collectionsmodule.so
>0x00007fed329cbf10  0x00007fed329d0968  Yes         /usr/lib64/python2.7/lib-dynload/itertoolsmodule.so
>0x00007fed327c6ca0  0x00007fed327c72c4  Yes         /usr/lib64/python2.7/lib-dynload/_bisectmodule.so
>0x00007fed325c1da0  0x00007fed325c2d54  Yes         /usr/lib64/python2.7/lib-dynload/_heapq.so
>0x00007fed323b6f90  0x00007fed323bc64c  Yes         /usr/lib64/python2.7/lib-dynload/_tkinter.so
>0x00007fed321632b0  0x00007fed3218dc00  Yes         /usr/lib64/tcl8.5/libTix.so
>0x00007fed31e3f550  0x00007fed31f0a67c  Yes         /lib64/libtk8.5.so
>0x00007fed31b12b80  0x00007fed31bd1b48  Yes         /lib64/libtcl8.5.so
>0x00007fed318de1f0  0x00007fed318eaf48  Yes         /lib64/libXft.so.2
>0x000000308a206220  0x000000308a22260c  Yes         /lib64/libfontconfig.so.1
>0x0000003088201ab0  0x0000003088207a00  Yes         /lib64/libXrender.so.1
>0x00007fed30ece1e0  0x00007fed30ed567c  Yes         /lib64/libnss_files.so.2
>0x00007fed30cbf250  0x00007fed30cc4848  Yes         /usr/lib64/python2.7/lib-dynload/_socketmodule.so
>0x00007fed30ab9110  0x00007fed30ab9b5c  Yes         /usr/lib64/python2.7/lib-dynload/_functoolsmodule.so
>0x00007fed308b2340  0x00007fed308b4fc0  Yes         /usr/lib64/python2.7/lib-dynload/_ssl.so
>0x0000003090602ab0  0x00000030906076ec  Yes         /lib64/libXcursor.so.1
>0x00007fed2bdfacf0  0x00007fed2bdfc5a8  Yes         /usr/lib64/python2.7/lib-dynload/selectmodule.so
>$1 = 0x0
>No symbol "__glib_assert_msg" in current context.
>rax            0x0	0
>rbx            0x0	0
>rcx            0xffffffffffffffff	-1
>rdx            0x6	6
>rsi            0x1623	5667
>rdi            0x1623	5667
>rbp            0x3136f40	0x3136f40
>rsp            0x7fff68f35818	0x7fff68f35818
>r8             0x30821b3a00	208341252608
>r9             0x30862c1730	208409466672
>r10            0x8	8
>r11            0x202	514
>r12            0x30eeb80	51309440
>r13            0x3122010	51519504
>r14            0x27ce760	41740128
>r15            0x30e1a80	51255936
>rip            0x3081e35ba5	0x3081e35ba5 <__GI_raise+53>
>eflags         0x202	[ IF ]
>cs             0x33	51
>ss             0x2b	43
>ds             0x0	0
>es             0x0	0
>fs             0x0	0
>gs             0x0	0
>Dump of assembler code for function __GI_raise:
>   0x0000003081e35b70 <+0>:	mov    %fs:0x2d4,%eax
>   0x0000003081e35b78 <+8>:	mov    %fs:0x2d0,%esi
>   0x0000003081e35b80 <+16>:	test   %esi,%esi
>   0x0000003081e35b82 <+18>:	jne    0x3081e35bb0 <__GI_raise+64>
>   0x0000003081e35b84 <+20>:	mov    $0xba,%eax
>   0x0000003081e35b89 <+25>:	syscall 
>   0x0000003081e35b8b <+27>:	mov    %eax,%esi
>   0x0000003081e35b8d <+29>:	mov    %eax,%fs:0x2d0
>   0x0000003081e35b95 <+37>:	movslq %edi,%rdx
>   0x0000003081e35b98 <+40>:	movslq %esi,%rsi
>   0x0000003081e35b9b <+43>:	movslq %eax,%rdi
>   0x0000003081e35b9e <+46>:	mov    $0xea,%eax
>   0x0000003081e35ba3 <+51>:	syscall 
>=> 0x0000003081e35ba5 <+53>:	cmp    $0xfffffffffffff000,%rax
>   0x0000003081e35bab <+59>:	ja     0x3081e35bbf <__GI_raise+79>
>   0x0000003081e35bad <+61>:	repz retq 
>   0x0000003081e35baf <+63>:	nop
>   0x0000003081e35bb0 <+64>:	test   %eax,%eax
>   0x0000003081e35bb2 <+66>:	jg     0x3081e35b95 <__GI_raise+37>
>   0x0000003081e35bb4 <+68>:	test   $0x7fffffff,%eax
>   0x0000003081e35bb9 <+73>:	je     0x3081e35bd0 <__GI_raise+96>
>   0x0000003081e35bbb <+75>:	neg    %eax
>   0x0000003081e35bbd <+77>:	jmp    0x3081e35b95 <__GI_raise+37>
>   0x0000003081e35bbf <+79>:	mov    0x37b272(%rip),%rdx        # 0x30821b0e38
>   0x0000003081e35bc6 <+86>:	neg    %eax
>   0x0000003081e35bc8 <+88>:	mov    %eax,%fs:(%rdx)
>   0x0000003081e35bcb <+91>:	or     $0xffffffffffffffff,%rax
>   0x0000003081e35bcf <+95>:	retq   
>   0x0000003081e35bd0 <+96>:	mov    %esi,%eax
>   0x0000003081e35bd2 <+98>:	jmp    0x3081e35b95 <__GI_raise+37>
>End of assembler dump.

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Attachments on bug 908197: 693706 | 693707 | 693708 | 693709 | 693710 | 693711 | 693712 | 693713 | 693714 | 693715