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Red Hat Bugzilla – Attachment 703209 Details for
Bug 916010
[abrt] python-2.7.3-7.2.fc17: nv_alloc_instruction: Process /usr/bin/python2.7 was killed by signal 6 (SIGABRT)
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File: backtrace
backtrace (text/plain), 120.49 KB, created by
Pete Gannett
on 2013-02-27 01:16:35 UTC
(
hide
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Description:
File: backtrace
Filename:
MIME Type:
Creator:
Pete Gannett
Created:
2013-02-27 01:16:35 UTC
Size:
120.49 KB
patch
obsolete
>warning: core file may not match specified executable file. >[New LWP 26715] >[New LWP 26716] >warning: .dynamic section for "/lib/libGLU.so.1" is not at the expected address (wrong library or version mismatch?) >[Thread debugging using libthread_db enabled] >Using host libthread_db library "/lib/libthread_db.so.1". >Core was generated by `/usr/bin/python /usr/lib/python2.7/site-packages/pymol/__init__.py /home/pganne'. >Program terminated with signal 6, Aborted. >#0 0xb778e424 in __kernel_vsyscall () > >Thread 2 (Thread 0xb4155b40 (LWP 26716)): >#0 0xb778e424 in __kernel_vsyscall () >No symbol table info available. >#1 0x4f425ef1 in select () at ../sysdeps/unix/syscall-template.S:82 >No locals. >#2 0xb74a867f in floatsleep (secs=<optimized out>) at /usr/src/debug/Python-2.7.3/Modules/timemodule.c:943 > _save = 0x9fda668 > t = {tv_sec = 0, tv_usec = 7086} > frac = <optimized out> >#3 time_sleep (self=0x0, args=(<float at remote 0xb362b684>,)) at /usr/src/debug/Python-2.7.3/Modules/timemodule.c:206 > secs = 0.019418001174926758 >#4 0x4feae01d in PyCFunction_Call (func=func@entry=<built-in function sleep>, arg=arg@entry=(<float at remote 0xb362b684>,), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/methodobject.c:116 > f = 0xb76df54c > meth = 0xb74a85a0 <time_sleep> > self = 0x0 > size = <optimized out> >#5 0x4ff0d0fb in call_function (oparg=<optimized out>, pp_stack=0xb41533a4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4098 > callargs = (<float at remote 0xb362b684>,) > flags = 1 > tstate = <optimized out> > func = <built-in function sleep> > w = <optimized out> > na = 1 > nk = <optimized out> > n = 167618152 > pfunc = 0x9fdeed4 > x = <optimized out> >#6 PyEval_EvalFrameEx (f=f@entry=Frame 0x9fded7c, for file /usr/lib/python2.7/threading.py, line 262, in wait (self=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761190>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761190>, _Condition__waiters=[<thread.lock at remote 0xb77611e0>], release=<built-in method release of thread.lock object at remote 0xb7761190>) at remote 0xb36bec0c>, timeout=<float at remote 0xb362b654>, waiter=<thread.lock at remote 0xb77611e0>, saved_state=None, endtime=<float at remote 0xb362b624>, delay=<float at remote 0xb362b684>, gotit=False, remaining=<float at remote 0xb362b684>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0x9fdeed8 > stack_pointer = <optimized out> > next_instr = 0x95cb32b "\001q\214" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x1> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0x9fdeeb4 > freevars = 0x9fdeed4 > retval = 0x0 > tstate = 0x9fda668 > co = 0xb76d3da0 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0x95cb244 "|" > names = ('_is_owned', 'RuntimeError', '_allocate_lock', 'acquire', '_Condition__waiters', 'append', '_release_save', 'None', '_note', '_time', 'True', 'min', '_sleep', 'remove', 'ValueError', '_acquire_restore') > consts = (None, 'cannot wait on un-acquired lock', '%s.wait(): got it', <float at remote 0x95402e4>, 0, 2, <float at remote 0x95402d4>, '%s.wait(%s): timed out', '%s.wait(%s): got it') >#7 0x4ff0e049 in PyEval_EvalCodeEx (co=co@entry=0xb76d3da0, globals=globals@entry={'current_thread': <function at remote 0xb76e2994>, '_BoundedSemaphore': <type at remote 0x95d0954>, 'currentThread': <function at remote 0xb76e2994>, '_Timer': <type at remote 0x95d12c4>, '_format_exc': <function at remote 0xb771d454>, 'Semaphore': <function at remote 0xb76ddca4>, 'activeCount': <function at remote 0xb76e2a74>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x95cc35c>, '_enumerate': <function at remote 0xb76e2aac>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb76ddf0c>, '_shutdown': <instancemethod at remote 0xb770e784>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x95d0e0c>, 'active_count': <function at remote 0xb76e2a74>, '__package__': None, '_Condition': <typ...(truncated), locals=locals@entry=0x0, args=0xa1233cc, argcount=argcount@entry=2, kws=0xa1233d4, kwcount=0, defs=0xb76dfc18, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0x9fded7c, for file /usr/lib/python2.7/threading.py, line 262, in wait (self=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761190>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761190>, _Condition__waiters=[<thread.lock at remote 0xb77611e0>], release=<built-in method release of thread.lock object at remote 0xb7761190>) at remote 0xb36bec0c>, timeout=<float at remote 0xb362b654>, waiter=<thread.lock at remote 0xb77611e0>, saved_state=None, endtime=<float at remote 0xb362b624>, delay=<float at remote 0xb362b684>, gotit=False, remaining=<float at remote 0xb362b684>) > retval = 0x0 > fastlocals = 0x9fdeeb4 > freevars = 0x9fdeed4 > tstate = 0x9fda668 > x = <optimized out> > u = <optimized out> >#8 0x4ff0c30d in fast_function (nk=<optimized out>, na=2, n=2, pp_stack=0xb4153584, func=<function at remote 0xb76dde64>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194 > co = 0xb76d3da0 > nd = 1 > globals = {'current_thread': <function at remote 0xb76e2994>, '_BoundedSemaphore': <type at remote 0x95d0954>, 'currentThread': <function at remote 0xb76e2994>, '_Timer': <type at remote 0x95d12c4>, '_format_exc': <function at remote 0xb771d454>, 'Semaphore': <function at remote 0xb76ddca4>, 'activeCount': <function at remote 0xb76e2a74>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x95cc35c>, '_enumerate': <function at remote 0xb76e2aac>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb76ddf0c>, '_shutdown': <instancemethod at remote 0xb770e784>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x95d0e0c>, 'active_count': <function at remote 0xb76e2a74>, '__package__': None, '_Condition': <typ...(truncated) > argdefs = <optimized out> > d = <optimized out> >#9 call_function (oparg=<optimized out>, pp_stack=0xb4153584) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119 > func = <function at remote 0xb76dde64> > w = <optimized out> > na = 2 > nk = <optimized out> > n = 2 > pfunc = 0xa1233cc > x = <optimized out> >#10 PyEval_EvalFrameEx (f=f@entry=Frame 0xa12328c, for file /usr/lib/python2.7/threading.py, line 403, in wait (self=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761190>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761190>, _Condition__waiters=[<thread.lock at remote 0xb77611e0>], release=<built-in method release of thread.lock object at remote 0xb7761190>) at remote 0xb36bec0c>) at remote 0xb36beb2c>, timeout=<float at remote 0xb362b654>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0xa1233d4 > stack_pointer = <optimized out> > next_instr = 0xb76bf71c "\001n" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x2> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xa1233c4 > freevars = 0xa1233cc > retval = 0x0 > tstate = 0x9fda668 > co = 0xb76d9410 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0xb76bf6f4 "|" > names = ('_Event__cond', 'acquire', '_Event__flag', 'wait', 'release') > consts = (None,) >#11 0x4ff0e049 in PyEval_EvalCodeEx (co=co@entry=0xb76d9410, globals=globals@entry={'current_thread': <function at remote 0xb76e2994>, '_BoundedSemaphore': <type at remote 0x95d0954>, 'currentThread': <function at remote 0xb76e2994>, '_Timer': <type at remote 0x95d12c4>, '_format_exc': <function at remote 0xb771d454>, 'Semaphore': <function at remote 0xb76ddca4>, 'activeCount': <function at remote 0xb76e2a74>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x95cc35c>, '_enumerate': <function at remote 0xb76e2aac>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb76ddf0c>, '_shutdown': <instancemethod at remote 0xb770e784>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x95d0e0c>, 'active_count': <function at remote 0xb76e2a74>, '__package__': None, '_Condition': <typ...(truncated), locals=locals@entry=0x0, args=0x9ed5d40, argcount=argcount@entry=2, kws=0x9ed5d48, kwcount=0, defs=0xb76dfcb8, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0xa12328c, for file /usr/lib/python2.7/threading.py, line 403, in wait (self=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761190>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761190>, _Condition__waiters=[<thread.lock at remote 0xb77611e0>], release=<built-in method release of thread.lock object at remote 0xb7761190>) at remote 0xb36bec0c>) at remote 0xb36beb2c>, timeout=<float at remote 0xb362b654>) > retval = 0x0 > fastlocals = 0xa1233c4 > freevars = 0xa1233cc > tstate = 0x9fda668 > x = <optimized out> > u = <optimized out> >#12 0x4ff0c30d in fast_function (nk=<optimized out>, na=2, n=2, pp_stack=0xb4153764, func=<function at remote 0xb76e2294>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194 > co = 0xb76d9410 > nd = 1 > globals = {'current_thread': <function at remote 0xb76e2994>, '_BoundedSemaphore': <type at remote 0x95d0954>, 'currentThread': <function at remote 0xb76e2994>, '_Timer': <type at remote 0x95d12c4>, '_format_exc': <function at remote 0xb771d454>, 'Semaphore': <function at remote 0xb76ddca4>, 'activeCount': <function at remote 0xb76e2a74>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x95cc35c>, '_enumerate': <function at remote 0xb76e2aac>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb76ddf0c>, '_shutdown': <instancemethod at remote 0xb770e784>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x95d0e0c>, 'active_count': <function at remote 0xb76e2a74>, '__package__': None, '_Condition': <typ...(truncated) > argdefs = <optimized out> > d = <optimized out> >#13 call_function (oparg=<optimized out>, pp_stack=0xb4153764) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119 > func = <function at remote 0xb76e2294> > w = <optimized out> > na = 2 > nk = <optimized out> > n = 2 > pfunc = 0x9ed5d40 > x = <optimized out> >#14 PyEval_EvalFrameEx (f=f@entry=Frame 0x9ed5bfc, for file /usr/lib/python2.7/site-packages/pymol/locking.py, line 54, in lock (_self=<module at remote 0xb76e6af4>, w=<float at remote 0xb362b654>, e=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761190>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761190>, _Condition__waiters=[<thread.lock at remote 0xb77611e0>], release=<built-in method release of thread.lock object at remote 0xb7761190>) at remote 0xb36bec0c>) at remote 0xb36beb2c>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0x9ed5d48 > stack_pointer = <optimized out> > next_instr = 0x9642067 "\001~\002" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x2> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0x9ed5d34 > freevars = 0x9ed5d40 > retval = 0x0 > tstate = 0x9fda668 > co = 0x9641188 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0x9642034 "|" > names = ('lock_api', 'acquire', 'threading', 'Event', 'wait') > consts = (None, 0, <float at remote 0x95ec79c>, <float at remote 0x95ec78c>, 2, 1) >#15 0x4ff0e049 in PyEval_EvalCodeEx (co=co@entry=0x9641188, globals=globals@entry={'unlock_c': <function at remote 0x9629a74>, 'lock': <function at remote 0x9629c6c>, 'lock_attempt': <function at remote 0x9629ca4>, 'unlock_glut': <function at remote 0x9629bfc>, 'lock_without_glut': <function at remote 0x9629c34>, 'unlock': <function at remote 0x9629d4c>, 'fb_action': <classobj at remote 0xb7464f2c>, 'lock_data': <function at remote 0x9629aac>, 'is_glut_thread': <function at remote 0x9629d84>, 'lock_glut': <function at remote 0x9629bc4>, 'setup_global_locks': <function at remote 0x9629dbc>, '_cmd': <module at remote 0xb76e6dc4>, '__package__': 'pymol', 'lock_status': <function at remote 0x9629b54>, 'block_flush': <function at remote 0x9629cdc>, '__doc__': None, 'unlock_status': <function at remote 0x9629b8c>, '__builtins__': {'bytearray': <type at remote 0x4ffa77a0>, 'IndexError': <type at remote 0x4ffab5a0>, 'all': <built-in function all>, 'help': <_Helper at remote 0xb76b776c>, 'vars': <built-in function vars>, 'SyntaxError': <type at remote 0x4ffab220>, 'unicode': <type at remote 0x4ffbb...(truncated), locals=locals@entry=0x0, args=0xb3897ba4, argcount=argcount@entry=1, kws=0xb3897ba8, kwcount=0, defs=0x963ff38, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0x9ed5bfc, for file /usr/lib/python2.7/site-packages/pymol/locking.py, line 54, in lock (_self=<module at remote 0xb76e6af4>, w=<float at remote 0xb362b654>, e=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761190>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761190>, _Condition__waiters=[<thread.lock at remote 0xb77611e0>], release=<built-in method release of thread.lock object at remote 0xb7761190>) at remote 0xb36bec0c>) at remote 0xb36beb2c>) > retval = 0x0 > fastlocals = 0x9ed5d34 > freevars = 0x9ed5d40 > tstate = 0x9fda668 > x = <optimized out> > u = <optimized out> >#16 0x4ff0c30d in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0xb4153944, func=<function at remote 0x9629c6c>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194 > co = 0x9641188 > nd = 1 > globals = {'unlock_c': <function at remote 0x9629a74>, 'lock': <function at remote 0x9629c6c>, 'lock_attempt': <function at remote 0x9629ca4>, 'unlock_glut': <function at remote 0x9629bfc>, 'lock_without_glut': <function at remote 0x9629c34>, 'unlock': <function at remote 0x9629d4c>, 'fb_action': <classobj at remote 0xb7464f2c>, 'lock_data': <function at remote 0x9629aac>, 'is_glut_thread': <function at remote 0x9629d84>, 'lock_glut': <function at remote 0x9629bc4>, 'setup_global_locks': <function at remote 0x9629dbc>, '_cmd': <module at remote 0xb76e6dc4>, '__package__': 'pymol', 'lock_status': <function at remote 0x9629b54>, 'block_flush': <function at remote 0x9629cdc>, '__doc__': None, 'unlock_status': <function at remote 0x9629b8c>, '__builtins__': {'bytearray': <type at remote 0x4ffa77a0>, 'IndexError': <type at remote 0x4ffab5a0>, 'all': <built-in function all>, 'help': <_Helper at remote 0xb76b776c>, 'vars': <built-in function vars>, 'SyntaxError': <type at remote 0x4ffab220>, 'unicode': <type at remote 0x4ffbb...(truncated) > argdefs = <optimized out> > d = <optimized out> >#17 call_function (oparg=<optimized out>, pp_stack=0xb4153944) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119 > func = <function at remote 0x9629c6c> > w = <optimized out> > na = 1 > nk = <optimized out> > n = 1 > pfunc = 0xb3897ba0 > x = <optimized out> >#18 PyEval_EvalFrameEx (f=f@entry=Frame 0xb3897a5c, for file /usr/lib/python2.7/site-packages/pymol/querying.py, line 619, in get_version (quiet=1, _self=<module at remote 0xb76e6af4>, r=-1), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0xb3897ba8 > stack_pointer = <optimized out> > next_instr = 0x97a40e9 "\001t\002" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x1> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xb3897b94 > freevars = 0xb3897ba0 > retval = 0x0 > tstate = 0x9fda668 > co = 0x97a3f50 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0x97a40d4 "t" > names = ('DEFAULT_ERROR', 'lock', '_cmd', 'get_version', '_COb', 'unlock', '_raising', 'pymol', 'CmdException', '_feedback', 'fb_module', 'cmd', 'fb_mask', 'results') > consts = ('\nDESCRIPTION\n \n "get_version" returns a tuple of length three containing text,\n floating point, and integer representations of the current PyMOL\n version number.\n \nPYMOL API\n\n cmd.get_version(int quiet)\n\n\t', None, ' version: %s (%2.3f) %d') >#19 0x4ff0e049 in PyEval_EvalCodeEx (co=co@entry=0x97a3f50, globals=globals@entry={'is_ok': <function at remote 0x962995c>, 'get_modal_draw': <function at remote 0x97b52cc>, 'get_names_of_type': <function at remote 0x97b5cdc>, 'auto_measure': <function at remote 0x97b5144>, 'get_object_color_index': <function at remote 0x97b5764>, 'lock': <function at remote 0x9629c6c>, 'get_dihedral': <function at remote 0x97b5994>, 'Shortcut': <classobj at remote 0xb76e7f8c>, 'get_mtl_obj': <function at remote 0x97b556c>, 'unlock': <function at remote 0x9629d4c>, 'get_volume_ramp': <function at remote 0x97b51ec>, 'identify': <function at remote 0x97b5b8c>, 'get_angle': <function at remote 0x97b595c>, '_feedback': <function at remote 0x9629fb4>, 'dist': <function at remote 0x97b54c4>, 'angle': <function at remote 0x97b541c>, 'get_phipsi': <function at remote 0x97b587c>, 'export_dots': <function at remote 0x97b56bc>, 'dihedral': <function at remote 0x97b5454>, 'index': <function at remote 0x97b5bc4>, 'get_color_tuple': <function at remote 0x97b579c>, 'DEFAULT_SUCCESS': None, '_cmd': <module at remote 0xb76...(truncated), locals=locals@entry=0x0, args=0xb362d3d0, argcount=argcount@entry=0, kws=0xb362d3d0, kwcount=0, defs=0x979ec38, defcount=defcount@entry=2, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0xb3897a5c, for file /usr/lib/python2.7/site-packages/pymol/querying.py, line 619, in get_version (quiet=1, _self=<module at remote 0xb76e6af4>, r=-1) > retval = 0x0 > fastlocals = 0xb3897b94 > freevars = 0xb3897ba0 > tstate = 0x9fda668 > x = <optimized out> > u = <optimized out> >#20 0x4ff0c30d in fast_function (nk=<optimized out>, na=0, n=0, pp_stack=0xb4153b24, func=<function at remote 0x97b55a4>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194 > co = 0x97a3f50 > nd = 2 > globals = {'is_ok': <function at remote 0x962995c>, 'get_modal_draw': <function at remote 0x97b52cc>, 'get_names_of_type': <function at remote 0x97b5cdc>, 'auto_measure': <function at remote 0x97b5144>, 'get_object_color_index': <function at remote 0x97b5764>, 'lock': <function at remote 0x9629c6c>, 'get_dihedral': <function at remote 0x97b5994>, 'Shortcut': <classobj at remote 0xb76e7f8c>, 'get_mtl_obj': <function at remote 0x97b556c>, 'unlock': <function at remote 0x9629d4c>, 'get_volume_ramp': <function at remote 0x97b51ec>, 'identify': <function at remote 0x97b5b8c>, 'get_angle': <function at remote 0x97b595c>, '_feedback': <function at remote 0x9629fb4>, 'dist': <function at remote 0x97b54c4>, 'angle': <function at remote 0x97b541c>, 'get_phipsi': <function at remote 0x97b587c>, 'export_dots': <function at remote 0x97b56bc>, 'dihedral': <function at remote 0x97b5454>, 'index': <function at remote 0x97b5bc4>, 'get_color_tuple': <function at remote 0x97b579c>, 'DEFAULT_SUCCESS': None, '_cmd': <module at remote 0xb76...(truncated) > argdefs = <optimized out> > d = <optimized out> >#21 call_function (oparg=<optimized out>, pp_stack=0xb4153b24) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119 > func = <function at remote 0x97b55a4> > w = <optimized out> > na = 0 > nk = <optimized out> > n = 0 > pfunc = 0xb362d3cc > x = <optimized out> >#22 PyEval_EvalFrameEx (f=f@entry=Frame 0xb362d28c, for file /usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py, line 3737, in __init__ (self=<Normal(app=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0xb362d3d0 > stack_pointer = <optimized out> > next_instr = 0xa051a53 "d\001" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = 0x0 > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xb362d3c4 > freevars = 0xb362d3cc > retval = 0x0 > tstate = 0x9fda668 > co = 0xb367b020 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0xa051a34 "t" > names = ('PMGSkin', '__init__', 'pymol', 'cmd', 'get_version', 'Normal', 'appversion', 'app', 'save_file', 'util', 'None', 'movie_command', 'movie_start', 'auto_overlay', 'edit_mode', 'valence') > consts = (None, 0, '', 1) >#23 0x4ff0e049 in PyEval_EvalCodeEx (co=0xb367b020, globals={'getdouble': <type at remote 0x4ffaed60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4ffb7e00>, 'mainloop': <function at remote 0xa16bae4>, 'Canvas': <classobj at remote 0xa1745cc>, 'AtSelLast': <function at remote 0xa17be64>, '__path__': ['/usr/lib/python2.7/site-packages/pmg_tk/skins/normal'], '_doAsync': <function at remote 0xb36b33e4>, 'CodeType': <type at remote 0x4ffa8920>, 'TRUE': 1, 'askdirectory': <function at remote 0xa183b8c>, 'getboolean': <function at remote 0xa16bf0c>, 'LAST': 'last', 'TclVersion': <float at remote 0x9f911ec>, 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0xa1743ec>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0xa17456c>, 'ColorEditor': <classobj at remote 0xb368e1dc>, 'cleanup': <module at remote 0xa1c3b84>, 'DictProxyType': <type at remote 0x4ffa9360>, 'ObjectType': <type at remote 0x4ffb7d20>, 'DictType': <type at remote 0x4ffb26a0>, 'askopenfile': <function at remote 0xa183ae4>, 'EXTENDED': 'extended', 'OFF': 0, 'string': <module at remote 0xb742d5cc>, ...(truncated), locals=locals@entry=0x0, args=args@entry=0xb36acef8, argcount=2, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0xb362d28c, for file /usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py, line 3737, in __init__ (self=<Normal(app=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__...(truncated) > retval = 0x0 > fastlocals = 0xb362d3c4 > freevars = 0xb362d3cc > tstate = 0x9fda668 > x = <optimized out> > u = <optimized out> >#24 0x4fe98891 in function_call (func=<function at remote 0xb36b41b4>, arg=(<Normal(app=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<th...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526 > result = <optimized out> > argdefs = <optimized out> > kwtuple = 0x0 > d = 0x0 > k = 0x0 > nk = 0 > nd = 0 >#25 0x4fe718e1 in PyObject_Call (func=func@entry=<function at remote 0xb36b41b4>, arg=arg@entry=(<Normal(app=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<th...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529 > result = <optimized out> > call = 0x4fe987e0 <function_call> >#26 0x4fe811dc in instancemethod_call (func=<function at remote 0xb36b41b4>, arg=(<Normal(app=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<th...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/classobject.c:2578 > self = <optimized out> > klass = <optimized out> > result = <optimized out> >#27 0x4fe718e1 in PyObject_Call (func=func@entry=<instancemethod at remote 0xa17d66c>, arg=arg@entry=(<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<thread.lock at...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529 > result = <optimized out> > call = 0x4fe81120 <instancemethod_call> >#28 0x4ff06e0c in PyEval_CallObjectWithKeywords (func=func@entry=<instancemethod at remote 0xa17d66c>, arg=arg@entry=(<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<thread.lock at...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3967 > result = <optimized out> >#29 0x4fe81f94 in PyInstance_New (klass=<classobj at remote 0xb369fa1c>, arg=(<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<thread.lock at...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/classobject.c:571 > res = <optimized out> > inst = 0xb36acecc > init = <instancemethod at remote 0xa17d66c> > initstr = '__init__' >#30 0x4fe718e1 in PyObject_Call (func=func@entry=<classobj at remote 0xb369fa1c>, arg=(<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<thread.lock at...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529 > result = <optimized out> > call = 0x4fe81f20 <PyInstance_New> >#31 0x4ff0a152 in do_call (nk=<optimized out>, na=1, pp_stack=0xb41540d4, func=<classobj at remote 0xb369fa1c>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4316 > callargs = <optimized out> > kwdict = 0x0 > result = 0x0 >#32 call_function (oparg=<optimized out>, pp_stack=0xb41540d4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4121 > func = <classobj at remote 0xb369fa1c> > w = <optimized out> > na = 1 > nk = <optimized out> > n = 0 > pfunc = 0xb362b448 > x = <optimized out> >#33 PyEval_EvalFrameEx (f=Frame 0xb362b30c, for file /usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py, line 3749, in __init__ (app=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], r...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0xb362b44c > stack_pointer = <optimized out> > next_instr = 0xb3679cdd "S" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x1> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xb362b444 > freevars = 0xb362b448 > retval = 0x0 > tstate = 0x9fda668 > co = 0xb367b0b0 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0xb3679cd4 "t" > names = ('Normal',) > consts = (None,) >#34 0x4ff0c7ec in fast_function (nk=167618152, na=1, n=1, pp_stack=0xb4154244, func=<function at remote 0xb36b348c>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4184 > retval = 0x0 > i = <optimized out> > fastlocals = <optimized out> > f = <optimized out> > tstate = 0x9fda668 > stack = <optimized out> > co = <optimized out> > nd = 0 > globals = {'getdouble': <type at remote 0x4ffaed60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4ffb7e00>, 'mainloop': <function at remote 0xa16bae4>, 'Canvas': <classobj at remote 0xa1745cc>, 'AtSelLast': <function at remote 0xa17be64>, '__path__': ['/usr/lib/python2.7/site-packages/pmg_tk/skins/normal'], '_doAsync': <function at remote 0xb36b33e4>, 'CodeType': <type at remote 0x4ffa8920>, 'TRUE': 1, 'askdirectory': <function at remote 0xa183b8c>, 'getboolean': <function at remote 0xa16bf0c>, 'LAST': 'last', 'TclVersion': <float at remote 0x9f911ec>, 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0xa1743ec>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0xa17456c>, 'ColorEditor': <classobj at remote 0xb368e1dc>, 'cleanup': <module at remote 0xa1c3b84>, 'DictProxyType': <type at remote 0x4ffa9360>, 'ObjectType': <type at remote 0x4ffb7d20>, 'DictType': <type at remote 0x4ffb26a0>, 'askopenfile': <function at remote 0xa183ae4>, 'EXTENDED': 'extended', 'OFF': 0, 'string': <module at remote 0xb742d5cc>, ...(truncated) > argdefs = <optimized out> > d = 0x0 >#35 call_function (oparg=<optimized out>, pp_stack=0xb4154244) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119 > func = <function at remote 0xb36b348c> > w = <optimized out> > na = 1 > nk = <optimized out> > n = 1 > pfunc = 0xb360f770 > x = <optimized out> >#36 PyEval_EvalFrameEx (f=f@entry=Frame 0xb360f624, for file /usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py, line 358, in setSkin (self=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0xb360f778 > stack_pointer = <optimized out> > next_instr = 0xa02418e "}\001" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x1> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xb360f75c > freevars = 0xb360f770 > retval = 0x0 > tstate = 0x9fda668 > co = 0xa028968 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0xa02411c "t" > names = ('isinstance', 'types', 'StringType', 'sys', 'modules', 'get', 'None', 'options', 'gui', '__import__', '__init__', 'skin', 'takedown', 'runSkin') > consts = (None, 'pymol.invocation', '.skins.') >#37 0x4ff0e049 in PyEval_EvalCodeEx (co=co@entry=0xa028968, globals=globals@entry={'getdouble': <type at remote 0x4ffaed60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4ffb7e00>, 'mainloop': <function at remote 0xa16bae4>, 'Canvas': <classobj at remote 0xa1745cc>, 'AtSelLast': <function at remote 0xa17be64>, 'CodeType': <type at remote 0x4ffa8920>, 'TRUE': 1, 'askdirectory': <function at remote 0xa183b8c>, 'getboolean': <function at remote 0xa16bf0c>, 'LAST': 'last', 'BASELINE': 'baseline', 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0xa1743ec>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0xa17456c>, 'DictProxyType': <type at remote 0x4ffa9360>, 'ObjectType': <type at remote 0x4ffb7d20>, 'DictType': <type at remote 0x4ffb26a0>, 'askopenfile': <function at remote 0xa183ae4>, 'EXTENDED': 'extended', 'OFF': 0, 'string': <module at remote 0xb742d5cc>, '__file__': '/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyc', 'LongType': <type at remote 0x4ffb1640>, 'CURRENT': 'current', 'CallWrapper': <classobj at remote 0xa17435c>, 'Scrollbar': <classobj at remote 0xa1747dc>, 'L...(truncated), locals=locals@entry=0x0, args=0xb3800b94, argcount=argcount@entry=2, kws=0xb3800b9c, kwcount=1, defs=0xa1b9e38, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0xb360f624, for file /usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py, line 358, in setSkin (self=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in...(truncated) > retval = 0x0 > fastlocals = 0xb360f75c > freevars = 0xb360f770 > tstate = 0x9fda668 > x = <optimized out> > u = <optimized out> >#38 0x4ff0c30d in fast_function (nk=<optimized out>, na=2, n=4, pp_stack=0xb4154424, func=<function at remote 0xa1be48c>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194 > co = 0xa028968 > nd = 1 > globals = {'getdouble': <type at remote 0x4ffaed60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4ffb7e00>, 'mainloop': <function at remote 0xa16bae4>, 'Canvas': <classobj at remote 0xa1745cc>, 'AtSelLast': <function at remote 0xa17be64>, 'CodeType': <type at remote 0x4ffa8920>, 'TRUE': 1, 'askdirectory': <function at remote 0xa183b8c>, 'getboolean': <function at remote 0xa16bf0c>, 'LAST': 'last', 'BASELINE': 'baseline', 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0xa1743ec>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0xa17456c>, 'DictProxyType': <type at remote 0x4ffa9360>, 'ObjectType': <type at remote 0x4ffb7d20>, 'DictType': <type at remote 0x4ffb26a0>, 'askopenfile': <function at remote 0xa183ae4>, 'EXTENDED': 'extended', 'OFF': 0, 'string': <module at remote 0xb742d5cc>, '__file__': '/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyc', 'LongType': <type at remote 0x4ffb1640>, 'CURRENT': 'current', 'CallWrapper': <classobj at remote 0xa17435c>, 'Scrollbar': <classobj at remote 0xa1747dc>, 'L...(truncated) > argdefs = <optimized out> > d = <optimized out> >#39 call_function (oparg=<optimized out>, pp_stack=0xb4154424) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119 > func = <function at remote 0xa1be48c> > w = <optimized out> > na = 2 > nk = <optimized out> > n = 4 > pfunc = 0xb3800b94 > x = <optimized out> >#40 PyEval_EvalFrameEx (f=f@entry=Frame 0xb3800a4c, for file /usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py, line 426, in __init__ (self=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-i...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0xb3800ba4 > stack_pointer = <optimized out> > next_instr = 0xa10ca24 "\001n" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x2> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xb3800b84 > freevars = 0xb3800b94 > retval = 0x0 > tstate = 0x9fda668 > co = 0xa028a88 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0xa10c8e4 "d\001" > names = ('allow_after', 'pymol', '_ext_gui', 'None', 'RuntimeError', 'Queue', 'fifo', 'skin', 'Tk', 'root', 'initializeTk_colors_common', 'initOS', 'Pmw', 'initialise', 'MegaWidget', '__init__', 'sys', 'modules', 'get', 'options', 'win_x', 'frameWidth', 'win_px', 'frameXAdjust', 'frameXPos', 'ext_y', 'frameHeight', 'win_py', 'frameYAdjust', 'frameYPos', 'setSkin', 'geometry', 'after', 'flush_fifo', 'runSkin') > consts = (None, 1, 0, 'parent', 'pymol.invocation', 220, 'run', '%dx%d+%d+%d', 1000) >#41 0x4ff0e049 in PyEval_EvalCodeEx (co=0xa028a88, globals={'getdouble': <type at remote 0x4ffaed60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4ffb7e00>, 'mainloop': <function at remote 0xa16bae4>, 'Canvas': <classobj at remote 0xa1745cc>, 'AtSelLast': <function at remote 0xa17be64>, 'CodeType': <type at remote 0x4ffa8920>, 'TRUE': 1, 'askdirectory': <function at remote 0xa183b8c>, 'getboolean': <function at remote 0xa16bf0c>, 'LAST': 'last', 'BASELINE': 'baseline', 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0xa1743ec>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0xa17456c>, 'DictProxyType': <type at remote 0x4ffa9360>, 'ObjectType': <type at remote 0x4ffb7d20>, 'DictType': <type at remote 0x4ffb26a0>, 'askopenfile': <function at remote 0xa183ae4>, 'EXTENDED': 'extended', 'OFF': 0, 'string': <module at remote 0xb742d5cc>, '__file__': '/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyc', 'LongType': <type at remote 0x4ffb1640>, 'CURRENT': 'current', 'CallWrapper': <classobj at remote 0xa17435c>, 'Scrollbar': <classobj at remote 0xa1747dc>, 'L...(truncated), locals=locals@entry=0x0, args=args@entry=0xa17d588, argcount=3, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0xb3800a4c, for file /usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py, line 426, in __init__ (self=<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-i...(truncated) > retval = 0x0 > fastlocals = 0xb3800b84 > freevars = 0xb3800b94 > tstate = 0x9fda668 > x = <optimized out> > u = <optimized out> >#42 0x4fe98891 in function_call (func=<function at remote 0xa1be4fc>, arg=(<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<thread.lock at...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526 > result = <optimized out> > argdefs = <optimized out> > kwtuple = 0x0 > d = 0x0 > k = 0x0 > nk = 0 > nd = 0 >#43 0x4fe718e1 in PyObject_Call (func=func@entry=<function at remote 0xa1be4fc>, arg=arg@entry=(<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<thread.lock at...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529 > result = <optimized out> > call = 0x4fe987e0 <function_call> >#44 0x4fe811dc in instancemethod_call (func=<function at remote 0xa1be4fc>, arg=(<PMGApp(_MegaArchetype__componentAliases={}, allow_after=1, _dynamicGroups=(), _MegaArchetype__componentInfo={'hull': (<Frame(widgetName='frame', _w='.169626156', _tclCommands=[], _name='169626156', master=<Tk(_tclCommands=['tkerror', 'exit', '169334340destroy'], master=None, children={'169626156': <...>}, _tkloaded=1, tk=<tkapp at remote 0xa1be560>) at remote 0xa1b9fcc>, tk=<tkapp at remote 0xa1be560>, children={}) at remote 0xa1c4a2c>, <instancemethod at remote 0xa17d70c>, 'Frame', <instancemethod at remote 0xa17d6e4>, None)}, frameXPos=4, frameWidth=860, frameXAdjust=0, _constructorKeywords={}, fifo=<Queue(unfinished_tasks=0, queue=<collections.deque at remote 0xa1be534>, maxsize=0, all_tasks_done=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb77611f0>, acquire=<built-in method acquire of thread.lock object at remote 0xb77611f0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb77611f0>) at remote 0xa1b9f8c>, mutex=<thread.lock at...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/classobject.c:2578 > self = <optimized out> > klass = <optimized out> > result = <optimized out> >#45 0x4fe718e1 in PyObject_Call (func=func@entry=<instancemethod at remote 0xa17d694>, arg=arg@entry=(<module at remote 0xb76e66ec>, 'normal'), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529 > result = <optimized out> > call = 0x4fe81120 <instancemethod_call> >#46 0x4ff06e0c in PyEval_CallObjectWithKeywords (func=func@entry=<instancemethod at remote 0xa17d694>, arg=arg@entry=(<module at remote 0xb76e66ec>, 'normal'), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3967 > result = <optimized out> >#47 0x4fe81f94 in PyInstance_New (klass=<classobj at remote 0xa1b4efc>, arg=(<module at remote 0xb76e66ec>, 'normal'), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/classobject.c:571 > res = <optimized out> > inst = 0xa1b9dec > init = <instancemethod at remote 0xa17d694> > initstr = '__init__' >#48 0x4fe718e1 in PyObject_Call (func=func@entry=<classobj at remote 0xa1b4efc>, arg=(<module at remote 0xb76e66ec>, 'normal'), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529 > result = <optimized out> > call = 0x4fe81f20 <PyInstance_New> >#49 0x4ff0a152 in do_call (nk=<optimized out>, na=2, pp_stack=0xb41549d4, func=<classobj at remote 0xa1b4efc>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4316 > callargs = <optimized out> > kwdict = 0x0 > result = 0x0 >#50 call_function (oparg=<optimized out>, pp_stack=0xb41549d4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4121 > func = <classobj at remote 0xa1b4efc> > w = <optimized out> > na = 2 > nk = <optimized out> > n = 0 > pfunc = 0xb3800a28 > x = <optimized out> >#51 PyEval_EvalFrameEx (f=f@entry=Frame 0xb38008e4, for file /usr/lib/python2.7/site-packages/pmg_tk/__init__.py, line 35, in run (pymol_instance=<module at remote 0xb76e66ec>, poll=0, skin='normal'), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0xb3800a2c > stack_pointer = <optimized out> > next_instr = 0x98a83a1 "j\004" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x2> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xb3800a1c > freevars = 0xb3800a28 > retval = 0x0 > tstate = 0x9fda668 > co = 0x98b59b0 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0x98a8374 "y8" > names = ('hasattr', 'sys', 'argv', 'PMGApp', 'run', 'traceback', 'print_exc') > consts = (None, 'argv', 'pymol') >#52 0x4ff0e049 in PyEval_EvalCodeEx (co=0x98b59b0, globals={'getdouble': <type at remote 0x4ffaed60>, 'MULTIPLE': 'multiple', 'TypeType': <type at remote 0x4ffb7e00>, 'mainloop': <function at remote 0xa16bae4>, 'Canvas': <classobj at remote 0xa1745cc>, 'AtSelLast': <function at remote 0xa17be64>, '__path__': ['/usr/lib/python2.7/site-packages/pmg_tk'], 'CodeType': <type at remote 0x4ffa8920>, 'Button': <classobj at remote 0xa17459c>, 'TRUE': 1, 'getboolean': <function at remote 0xa16bf0c>, 'LAST': 'last', 'BASELINE': 'baseline', 'BOTTOM': 'bottom', 'Wm': <classobj at remote 0xa1743ec>, 'NUMERIC': 'numeric', 'Toplevel': <classobj at remote 0xa17456c>, 'ColorEditor': <module at remote 0xa1c3dac>, 'DictProxyType': <type at remote 0x4ffa9360>, 'ObjectType': <type at remote 0x4ffb7d20>, 'DictType': <type at remote 0x4ffb26a0>, 'askopenfile': <function at remote 0xa183ae4>, 'EXTENDED': 'extended', 'OFF': 0, 'string': <module at remote 0xb742d5cc>, 'SEL': 'sel', '__file__': '/usr/lib/python2.7/site-packages/pmg_tk/__init__.pyc', 'ALL': 'all', 'CURRENT': 'current', 'CallWrap...(truncated), locals=locals@entry=0x0, args=args@entry=0xa0207e0, argcount=3, kws=kws@entry=0xb7730038, kwcount=kwcount@entry=0, defs=defs@entry=0xa176198, defcount=defcount@entry=2, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0xb38008e4, for file /usr/lib/python2.7/site-packages/pmg_tk/__init__.py, line 35, in run (pymol_instance=<module at remote 0xb76e66ec>, poll=0, skin='normal') > retval = 0x0 > fastlocals = 0xb3800a1c > freevars = 0xb3800a28 > tstate = 0x9fda668 > x = <optimized out> > u = <optimized out> >#53 0x4fe98990 in function_call (func=<function at remote 0xa01a9cc>, arg=(<module at remote 0xb76e66ec>, 0, 'normal'), kw={}) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526 > result = <optimized out> > argdefs = <optimized out> > kwtuple = () > d = 0xa176198 > k = 0xb7730038 > nk = <optimized out> > nd = 2 >#54 0x4fe718e1 in PyObject_Call (func=func@entry=<function at remote 0xa01a9cc>, arg=arg@entry=(<module at remote 0xb76e66ec>, 0, 'normal'), kw=kw@entry={}) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529 > result = <optimized out> > call = 0x4fe987e0 <function_call> >#55 0x4ff09e7a in ext_do_call (nk=167905236, na=0, flags=<optimized out>, pp_stack=0xb4154c64, func=<function at remote 0xa01a9cc>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4411 > kwdict = {} > nstar = <optimized out> > callargs = <optimized out> > stararg = (<module at remote 0xb76e66ec>, 0, 'normal') > result = 0x0 >#56 PyEval_EvalFrameEx (f=Frame 0xb3800784, for file /usr/lib/python2.7/threading.py, line 504, in run (self=<Thread(_Thread__ident=-1273668800, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761120>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761120>) at remote 0xa1b9e4c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761200>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761200>) at remote 0xa1b9dac>) at remote 0xa1b9b6c>, _Thread__stderr=<module at remote 0xb76e674c>, _Thread__target=<function at remote 0xa01a9cc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2779 > flags = <optimized out> > func = <function at remote 0xa01a9cc> > na = 0 > nk = 167905236 > n = <optimized out> > pfunc = 0xb38008c0 > sp = 0xb38008c4 > stack_pointer = <optimized out> > next_instr = 0xb76be6dd "\001n" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = 0x0 > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xb38008bc > freevars = 0xb38008c0 > retval = 0x0 > tstate = 0x9fda668 > co = 0xb76d9728 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0xb76be6bc "z&" > names = ('_Thread__target', '_Thread__args', '_Thread__kwargs') > consts = (None,) >#57 0x4ff0c7ec in fast_function (nk=167618152, na=1, n=1, pp_stack=0xb4154dd4, func=<function at remote 0xb76e2454>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4184 > retval = 0x0 > i = <optimized out> > fastlocals = <optimized out> > f = <optimized out> > tstate = 0x9fda668 > stack = <optimized out> > co = <optimized out> > nd = 0 > globals = {'current_thread': <function at remote 0xb76e2994>, '_BoundedSemaphore': <type at remote 0x95d0954>, 'currentThread': <function at remote 0xb76e2994>, '_Timer': <type at remote 0x95d12c4>, '_format_exc': <function at remote 0xb771d454>, 'Semaphore': <function at remote 0xb76ddca4>, 'activeCount': <function at remote 0xb76e2a74>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x95cc35c>, '_enumerate': <function at remote 0xb76e2aac>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb76ddf0c>, '_shutdown': <instancemethod at remote 0xb770e784>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x95d0e0c>, 'active_count': <function at remote 0xb76e2a74>, '__package__': None, '_Condition': <typ...(truncated) > argdefs = <optimized out> > d = 0x0 >#58 call_function (oparg=<optimized out>, pp_stack=0xb4154dd4) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119 > func = <function at remote 0xb76e2454> > w = <optimized out> > na = 1 > nk = <optimized out> > n = 1 > pfunc = 0xb3800734 > x = <optimized out> >#59 PyEval_EvalFrameEx (f=Frame 0xb38005ec, for file /usr/lib/python2.7/threading.py, line 551, in __bootstrap_inner (self=<Thread(_Thread__ident=-1273668800, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761120>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761120>) at remote 0xa1b9e4c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761200>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761200>) at remote 0xa1b9dac>) at remote 0xa1b9b6c>, _Thread__stderr=<module at remote 0xb76e674c>, _Thread__target=<function at remote 0xa01a9cc>, _Thread__kwargs={}, _Verbose__verbose=False, _...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0xb3800738 > stack_pointer = <optimized out> > next_instr = 0x95cb71a "\001Wn\a\001\004t\016" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x1> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xb3800724 > freevars = 0xb3800734 > retval = 0x0 > tstate = 0x9fda668 > co = 0xb76d9848 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0x95cb674 "z\322\001|" > names = ('_set_ident', '_Thread__started', 'set', '_active_limbo_lock', '_active', '_Thread__ident', '_limbo', '_note', '_trace_hook', '_sys', 'settrace', '_profile_hook', 'setprofile', 'run', 'SystemExit', 'stderr', 'write', 'name', '_format_exc', '_Thread__exc_info', '_Thread__stderr', 'tb_frame', 'f_code', 'co_filename', 'tb_lineno', 'co_name', 'tb_next', '_Thread__exc_clear', '_Thread__stop', '_get_ident') > consts = (None, '%s.__bootstrap(): thread started', '%s.__bootstrap(): registering trace hook', '%s.__bootstrap(): registering profile hook', '%s.__bootstrap(): raised SystemExit', '%s.__bootstrap(): unhandled exception', 'Exception in thread %s:\n%s\n', 'Exception in thread ', ' (most likely raised during interpreter shutdown):', 'Traceback (most recent call last):', ' File "%s", line %s, in %s', '%s: %s', '%s.__bootstrap(): normal return') >#60 0x4ff0c7ec in fast_function (nk=167618152, na=1, n=1, pp_stack=0xb4154f44, func=<function at remote 0xb76e24fc>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4184 > retval = 0x0 > i = <optimized out> > fastlocals = <optimized out> > f = <optimized out> > tstate = 0x9fda668 > stack = <optimized out> > co = <optimized out> > nd = 0 > globals = {'current_thread': <function at remote 0xb76e2994>, '_BoundedSemaphore': <type at remote 0x95d0954>, 'currentThread': <function at remote 0xb76e2994>, '_Timer': <type at remote 0x95d12c4>, '_format_exc': <function at remote 0xb771d454>, 'Semaphore': <function at remote 0xb76ddca4>, 'activeCount': <function at remote 0xb76e2a74>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x95cc35c>, '_enumerate': <function at remote 0xb76e2aac>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb76ddf0c>, '_shutdown': <instancemethod at remote 0xb770e784>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x95d0e0c>, 'active_count': <function at remote 0xb76e2a74>, '__package__': None, '_Condition': <typ...(truncated) > argdefs = <optimized out> > d = 0x0 >#61 call_function (oparg=<optimized out>, pp_stack=0xb4154f44) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119 > func = <function at remote 0xb76e24fc> > w = <optimized out> > na = 1 > nk = <optimized out> > n = 1 > pfunc = 0xb38005c8 > x = <optimized out> >#62 PyEval_EvalFrameEx (f=f@entry=Frame 0xb380048c, for file /usr/lib/python2.7/threading.py, line 524, in __bootstrap (self=<Thread(_Thread__ident=-1273668800, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761120>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761120>) at remote 0xa1b9e4c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761200>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761200>) at remote 0xa1b9dac>) at remote 0xa1b9b6c>, _Thread__stderr=<module at remote 0xb76e674c>, _Thread__target=<function at remote 0xa01a9cc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0xb38005cc > stack_pointer = <optimized out> > next_instr = 0xb76bb2c0 "\001Wn#" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x1> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0xb38005c4 > freevars = 0xb38005c8 > retval = 0x0 > tstate = 0x9fda668 > co = 0xb76d9770 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0xb76bb2b4 "y\016" > names = ('_Thread__bootstrap_inner', '_Thread__daemonic', '_sys', 'None') > consts = (None,) >#63 0x4ff0e049 in PyEval_EvalCodeEx (co=0xb76d9770, globals={'current_thread': <function at remote 0xb76e2994>, '_BoundedSemaphore': <type at remote 0x95d0954>, 'currentThread': <function at remote 0xb76e2994>, '_Timer': <type at remote 0x95d12c4>, '_format_exc': <function at remote 0xb771d454>, 'Semaphore': <function at remote 0xb76ddca4>, 'activeCount': <function at remote 0xb76e2a74>, '_profile_hook': None, '_sleep': <built-in function sleep>, '_trace_hook': None, 'ThreadError': <type at remote 0x95cc35c>, '_enumerate': <function at remote 0xb76e2aac>, '_start_new_thread': <built-in function start_new_thread>, 'BoundedSemaphore': <function at remote 0xb76ddf0c>, '_shutdown': <instancemethod at remote 0xb770e784>, '__all__': ['activeCount', 'active_count', 'Condition', 'currentThread', 'current_thread', 'enumerate', 'Event', 'Lock', 'RLock', 'Semaphore', 'BoundedSemaphore', 'Thread', 'Timer', 'setprofile', 'settrace', 'local', 'stack_size'], '_Event': <type at remote 0x95d0e0c>, 'active_count': <function at remote 0xb76e2a74>, '__package__': None, '_Condition': <typ...(truncated), locals=locals@entry=0x0, args=args@entry=0x98b63d8, argcount=1, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0xb380048c, for file /usr/lib/python2.7/threading.py, line 524, in __bootstrap (self=<Thread(_Thread__ident=-1273668800, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761120>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761120>) at remote 0xa1b9e4c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761200>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761200>) at remote 0xa1b9dac>) at remote 0xa1b9b6c>, _Thread__stderr=<module at remote 0xb76e674c>, _Thread__target=<function at remote 0xa01a9cc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread...(truncated) > retval = 0x0 > fastlocals = 0xb38005c4 > freevars = 0xb38005c8 > tstate = 0x9fda668 > x = <optimized out> > u = <optimized out> >#64 0x4fe98891 in function_call (func=<function at remote 0xb76e248c>, arg=(<Thread(_Thread__ident=-1273668800, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761120>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761120>) at remote 0xa1b9e4c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761200>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761200>) at remote 0xa1b9dac>) at remote 0xa1b9b6c>, _Thread__stderr=<module at remote 0xb76e674c>, _Thread__target=<function at remote 0xa01a9cc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0xb76e66ec>, 0, 'normal'), _Thread__stopped=False, _Thread__init...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/funcobject.c:526 > result = <optimized out> > argdefs = <optimized out> > kwtuple = 0x0 > d = 0x0 > k = 0x0 > nk = 0 > nd = 0 >#65 0x4fe718e1 in PyObject_Call (func=func@entry=<function at remote 0xb76e248c>, arg=arg@entry=(<Thread(_Thread__ident=-1273668800, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761120>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761120>) at remote 0xa1b9e4c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761200>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761200>) at remote 0xa1b9dac>) at remote 0xa1b9b6c>, _Thread__stderr=<module at remote 0xb76e674c>, _Thread__target=<function at remote 0xa01a9cc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0xb76e66ec>, 0, 'normal'), _Thread__stopped=False, _Thread__init...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529 > result = <optimized out> > call = 0x4fe987e0 <function_call> >#66 0x4fe811dc in instancemethod_call (func=<function at remote 0xb76e248c>, arg=(<Thread(_Thread__ident=-1273668800, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761120>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761120>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761120>) at remote 0xa1b9e4c>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xb7761200>, acquire=<built-in method acquire of thread.lock object at remote 0xb7761200>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xb7761200>) at remote 0xa1b9dac>) at remote 0xa1b9b6c>, _Thread__stderr=<module at remote 0xb76e674c>, _Thread__target=<function at remote 0xa01a9cc>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0xb76e66ec>, 0, 'normal'), _Thread__stopped=False, _Thread__init...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.3/Objects/classobject.c:2578 > self = <optimized out> > klass = <optimized out> > result = <optimized out> >#67 0x4fe718e1 in PyObject_Call (func=func@entry=<instancemethod at remote 0xa17d61c>, arg=arg@entry=(), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/abstract.c:2529 > result = <optimized out> > call = 0x4fe81120 <instancemethod_call> >#68 0x4ff06e0c in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0xa17d61c>, arg=(), kw=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3967 > result = <optimized out> >#69 0x4ff3d0b1 in t_bootstrap (boot_raw=0x9fdf1e0) at /usr/src/debug/Python-2.7.3/Modules/threadmodule.c:614 > boot = 0x9fdf1e0 > tstate = 0x9fda668 > res = <optimized out> >#70 0x4f4f3adf in start_thread (arg=0xb4155b40) at pthread_create.c:309 > __res = <optimized out> > pd = 0xb4155b40 > now = <optimized out> > unwind_buf = {cancel_jmp_buf = {{jmp_buf = {1330659316, 0, 4001536, -1273670552, 1363394398, -443422552}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}} > not_first_call = 0 > pagesize_m1 = <optimized out> > sp = <optimized out> > freesize = <optimized out> >#71 0x4f42d42e in clone () at ../sysdeps/unix/sysv/linux/i386/clone.S:133 >No locals. > >Thread 1 (Thread 0xb77706c0 (LWP 26715)): >#0 0xb778e424 in __kernel_vsyscall () >No symbol table info available. >#1 0x4f36794f in __GI_raise (sig=sig@entry=6) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64 > resultvar = <optimized out> > resultvar = <optimized out> > pid = 1330540532 > selftid = 26715 >#2 0x4f3692a3 in __GI_abort () at abort.c:91 > save_stage = 2 > act = {__sigaction_handler = {sa_handler = 0x4f000000, sa_sigaction = 0x4f000000}, sa_mask = {__val = {0, 3059340059, 169672771, 1330540532, 1328940101, 0, 1330278489, 1, 4294967295, 1329259173, 169690240, 169796648, 3059351691, 3063984116, 169691368, 11, 1329053707, 1330540532, 1330280315, 16, 1330541600, 1, 1330542944, 1330280315, 3221105736, 1330540532, 3062422822, 1330540532, 1330542944, 1329275040, 3, 4096}}, sa_flags = 1329764360, sa_restorer = 0x4f4e6ff4} > sigs = {__val = {32, 0 <repeats 31 times>}} >#3 0x4f360687 in __assert_fail_base (fmt=0x4f4a87d8 "%s%s%s:%u: %s%sAssertion `%s' failed.\n%n", assertion=assertion@entry=0xb688d6dc "pc->num_instructions < 2048", file=file@entry=0xb688d6ca "nv50_pc.h", line=line@entry=351, function=function@entry=0xb688dd26 "nv_alloc_instruction") at assert.c:94 > str = 0xa077d28 "PtNOPtNOnv50_pc.h:351: nv_alloc_instruction: Assertion `pc->num_instructions < 2048' failed.\n" > total = 4096 >#4 0x4f360737 in __GI___assert_fail (assertion=assertion@entry=0xb688d6dc "pc->num_instructions < 2048", file=file@entry=0xb688d6ca "nv50_pc.h", line=line@entry=351, function=function@entry=0xb688dd26 "nv_alloc_instruction") at assert.c:103 >No locals. >#5 0xb65a150b in nv_alloc_instruction (opcode=5, pc=<optimized out>) at nv50_pc.h:351 > insn = 0xb37fdfd0 >#6 new_instruction (opcode=5, pc=<optimized out>) at nv50_pc.h:362 >No locals. >#7 bld_insn_1 (opcode=opcode@entry=5, src0=src0@entry=0xb379b060, bld=0xa1f0638) at nv50_tgsi_to_nc.c:535 > insn = 0xb37fdfd0 >#8 0xb65a74ea in bld_instruction (insn=0xa23b0d8, bld=0xa1f0638) at nv50_tgsi_to_nc.c:1602 > dreg = 0xa23b0e8 > src1 = 0xb379b76c > dst0 = {0xb379b60c, 0xb379b6e8, 0x0, 0x0} > prog = 0xa1444c0 > src2 = 0xb379b060 > temp = <optimized out> > src0 = 0xb379b740 > c = <optimized out> > opcode = <optimized out> >#9 nv50_tgsi_to_nc (pc=pc@entry=0xb3780008, ti=ti@entry=0xa204dc0) at nv50_tgsi_to_nc.c:2060 > bld = 0xa1f0638 > c = <optimized out> > ip = <optimized out> >#10 0xb659cdc8 in nv50_generate_code (ti=ti@entry=0xa204dc0) at nv50_pc.c:500 > pc = 0xb3780008 > ret = <optimized out> > i = <optimized out> >#11 0xb659a95b in nv50_program_translate (p=p@entry=0xa1444c0) at nv50_program.c:658 > ti = 0xa204dc0 > ret = <optimized out> > __FUNCTION__ = "nv50_program_translate" >#12 0xb659aee8 in nv50_program_validate (nv50=0x9910b08, prog=0xa1444c0) at nv50_shader_state.c:134 >No locals. >#13 0xb659b585 in nv50_fragprog_validate (nv50=0x9910b08) at nv50_shader_state.c:194 > chan = 0x9900c98 > fp = 0xa1444c0 >#14 0xb6597354 in nv50_state_validate (nv50=nv50@entry=0x9910b08, mask=mask@entry=4294967295, words=words@entry=8) at nv50_state_validate.c:393 > validate = <optimized out> > state_mask = 2064527 > i = <optimized out> >#15 0xb65984e7 in nv50_draw_vbo (pipe=0x9910b08, info=0xbffe3150) at nv50_vbo.c:660 > nv50 = 0x9910b08 > chan = 0x9900c98 > __PRETTY_FUNCTION__ = "nv50_draw_vbo" >#16 0xb66b914a in st_draw_vbo (ctx=0x99855f0, arrays=0x99e2eb0, prims=0xbffe322c, nr_prims=1, ib=0xbffe321c, index_bounds_valid=0 '\000', min_index=4294967295, max_index=4294967295, tfb_vertcount=0x0) at state_tracker/st_draw.c:1128 > st = 0x99dfba0 > pipe = 0x9910b08 > ibuffer = {index_size = 4, offset = 0, buffer = 0x9fdd338} > info = {indexed = 1 '\001', mode = 1, start = 0, count = 3016, start_instance = 0, instance_count = 1, index_bias = 0, min_index = 0, max_index = 4294967295, primitive_restart = 0 '\000', restart_index = 0, count_from_stream_output = 0x0} > i = <optimized out> > num_instances = <optimized out> > max_index_plus_base = <optimized out> > new_array = 0 '\000' >#17 0xb66b1201 in vbo_validated_drawrangeelements (ctx=ctx@entry=0x99855f0, mode=mode@entry=1, index_bounds_valid=index_bounds_valid@entry=0 '\000', start=start@entry=4294967295, end=end@entry=4294967295, count=count@entry=3016, type=type@entry=5125, indices=indices@entry=0x0, basevertex=basevertex@entry=0, numInstances=numInstances@entry=1) at vbo/vbo_exec_array.c:811 > vbo = 0x99e0758 > exec = 0x99e10e0 > ib = {count = 3016, type = 5125, obj = 0xa10c138, ptr = 0x0} > prim = {{mode = 1, indexed = 1, begin = 1, end = 1, weak = 0, no_current_update = 1, pad = 0, start = 0, count = 3016, basevertex = 0, num_instances = 1}} >#18 0xb66b15e5 in vbo_exec_DrawElements (mode=1, count=3016, type=5125, indices=0x0) at vbo/vbo_exec_array.c:937 > ctx = 0x99855f0 >#19 0x42695131 in glDrawElements (mode=mode@entry=1, count=count@entry=3016, type=type@entry=5125, indices=indices@entry=0x0) at ../../../src/mapi/glapi/glapi_mapi_tmp.h:3599 > _tbl = 0x0 > _func = <optimized out> >#20 0xb6d97d88 in CGO_gl_draw_buffers_indexed (I=0x99e68e8, pc=0xbffe33d4) at layer1/CGO.c:5559 > mode = 1 > arrays = <optimized out> > narrays = <optimized out> > nindices = 3016 > nverts = 3016 > bufs = {1, 2, 3, 4, 0} > shaderPrg = 0x99cc998 > attr_a_Vertex = 0 > attr_a_Normal = 1 > attr_a_Color = 2 > attr_a_Accessibility = 3 >#21 0xb6da9ab0 in CGORenderGL (I=0xa109b70, color=color@entry=0x0, set1=set1@entry=0x0, set2=set2@entry=0x0, info=info@entry=0xbffe3610, rep=rep@entry=0xa0ccab0) at layer1/CGO.c:6680 > pc = 0xa25c304 > op = 33 > R = 0x99e68e8 > G = <optimized out> >#22 0xb6ef63e0 in RepWireBondRender (I=0xa0ccab0, info=0xbffe3610) at layer2/RepWireBond.c:967 > shaderPrg = 0x99cc998 > generate_shader_cgo = -18350 > line_as_cylinders = 0 > nvidia_bugs = 0 > use_shader = 1 > use_display_lists = 0 > nvidia_bugs = 1 > G = <optimized out> > ray = <optimized out> > pick = 0x0 > v = <optimized out> > vw = 0x0 > last_width = <optimized out> > c = <optimized out> > i = <optimized out> > j = <optimized out> > p = <optimized out> > line_width = 1.11750007 > line_width_setting = -nan(0x400000) >#23 0xb6e3bd38 in CoordSetRender (I=0xa143fe0, info=0xbffe3610) at layer2/CoordSet.c:1379 > a = 7 > aa = <optimized out> > float_labels = 0 > pass = 0 > ray = 0x0 > pick = 0x0 > r = <optimized out> > sculpt_vdw_vis_mode = <optimized out> > G = 0x95d7b48 >#24 0xb6e62aa1 in ObjectMoleculeRender (I=0xa143ca8, info=0xbffe3610) at layer2/ObjectMolecule.c:12496 > G = 0x95d7b48 > state = <optimized out> > ray = 0x0 > pick = 0x0 > pass = 0 > a = <optimized out> > cs = 0xa143fe0 > pop_matrix = 0 > use_matrices = 0 >#25 0xb6e03fc7 in SceneRenderAll (G=G@entry=0x95d7b48, context=context@entry=0xbffe3868, normal=normal@entry=0xbffe3808, pickVLA=pickVLA@entry=0x0, pass=pass@entry=0, fat=fat@entry=0, width_scale=width_scale@entry=0, grid=grid@entry=0xbffe3880, dynamic_pass=dynamic_pass@entry=0) at layer1/Scene.c:8574 > slot_vla = 0x0 > I = 0x9b829a8 > rec = <optimized out> > vv = {0, 0, 1, 1} > state = 0 > info = {state = 0, ray = 0x0, alpha_cgo = 0x0, pick = 0x0, pass = 0, width_scale_flag = 0, front = 101.719147, back = 156.31781, stereo_front = 101.719147, fog_start = 126.288544, fog_end = 156.31781, view_normal = {0, 0, 1}, width_scale = 0, vertex_scale = 0.0947893262, pmv_matrix = 0x9b82ab0, sampling = 1, ortho = 0, line_lighting = 0, dynamic_width = 1, dynamic_width_factor = 0.0599999987, dynamic_width_min = 0.75, dynamic_width_max = 2.5} >#26 0xb6e0b4b5 in DoRendering (G=G@entry=0x95d7b48, I=I@entry=0x9b829a8, offscreen=offscreen@entry=0, grid=grid@entry=0xbffe3880, times=times@entry=0, curState=curState@entry=0, normal=normal@entry=0xbffe3808, context=context@entry=0xbffe3868, width_scale=0, renderTransparent=renderTransparent@entry=1, onlySelections=onlySelections@entry=0, excludeSelections=excludeSelections@entry=0) at layer1/Scene.c:8925 > slot = <optimized out> > pass = <optimized out> >#27 0xb6e10c3e in SceneRender (G=G@entry=0x95d7b48, pick=0x0, pick@entry=0xdc, x=0, x@entry=220, y=0, y@entry=220, smp=0x0, smp@entry=0xdc, oversize_width=0, oversize_width@entry=220, oversize_height=0, oversize_height@entry=220, click_side=0, click_side@entry=220, force_copy=0) at layer1/Scene.c:9984 > times = 0 > offscreen = 0 > I = <optimized out> > fog = {0, 0, 0, 1} > v = <optimized out> > lowBits = <optimized out> > highBits = <optimized out> > lowBitVLA = 0x0 > highBitVLA = 0x0 > high = <optimized out> > low = <optimized out> > zAxis = {0, 0, 1, 0} > normal = {0, 0, 1, 0} > aspRat = 1.328125 > height = <optimized out> > width = <optimized out> > start_time = 0 > view_save = {0, 0, 860, 498} > pickVLA = <optimized out> > pik = <optimized out> > lastIndex = 0 > lastPtr = 0x0 > index = <optimized out> > curState = 0 > nPick = <optimized out> > nHighBits = <optimized out> > nLowBits = <optimized out> > fov = 20 > must_render_stereo = <optimized out> > mono_as_quad_stereo = <optimized out> > stereo_using_mono_matrix = 0 > debug_pick = 0 > render_buffer = 1029 > context = {unit_left = -0.166666672, unit_right = 1.16666663, unit_top = 0, unit_bottom = 1, unit_front = -0.5, unit_back = 0.5} > width_scale = 0 > stereo_mode = 0 > stereo = 0 > grid = {n_col = 0, n_row = 0, first_slot = 0, last_slot = 0, asp_adjust = 0, active = 0, size = 0, slot = 0, mode = 0, cur_view = {0, 0, 0, 0}, context = {unit_left = 0, unit_right = 0, unit_top = 0, unit_bottom = 0, unit_front = 0, unit_back = 0}} > grid_mode = <optimized out> > fog_active = 1 >#28 0xb6dca1ef in OrthoDoDraw (G=G@entry=0x95d7b48, render_mode=render_mode@entry=0) at layer1/Ortho.c:1606 > I = 0xb4ea4008 > x = <optimized out> > y = <optimized out> > l = <optimized out> > lcount = <optimized out> > str = <optimized out> > v = <optimized out> > showLines = <optimized out> > height = <optimized out> > overlay = 0 > text = 0 > rightSceneMargin = 220 > internal_feedback = 1 > times = 1 > double_pump = 0 > bg_color = <optimized out> > skip_prompt = 0 > render = <optimized out> > internal_gui_mode = 0 >#29 0xb6f1668c in ExecutiveDrawNow (G=G@entry=0x95d7b48) at layer3/Executive.c:12109 > stereo_mode = 2 > stereo = 0 > I = 0x9b9be08 >#30 0xb6f9721a in PyMOL_Draw (I=0x98cbbd8) at layer5/PyMOL.c:3917 > G = 0x95d7b48 >#31 0xb6f98ab6 in MainDrawLocked () at layer5/main.c:831 > G = 0x95d7b48 > I = 0x99e6bd8 >#32 0xb6f99c6f in MainDraw () at layer5/main.c:1081 > skip = 0 > I = 0x99e6bd8 > usec_sleep_after_draw = 0 > G = 0x95d7b48 >#33 0xb6d00754 in fghRedrawWindow (window=0x98cd110) at freeglut_main.c:207 > current_window = 0x98cd110 >#34 fghcbDisplayWindow (window=0x98cd110, enumerator=0xbffe3cd4) at freeglut_main.c:224 >No locals. >#35 0xb6d04337 in fgEnumWindows (enumCallback=enumCallback@entry=0xb6d006c0 <fghcbDisplayWindow>, enumerator=enumerator@entry=0xbffe3cd4) at freeglut_structure.c:396 > window = 0x98cd110 >#36 0xb6d00c78 in fghDisplayAll () at freeglut_main.c:247 > enumerator = {found = 0 '\000', data = 0x0} >#37 glutMainLoopEvent () at freeglut_main.c:1485 > window = <optimized out> > event = {type = -1225028333, xany = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612}, xkey = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, root = 157121352, subwindow = 161377240, time = 0, x = -1227024267, y = 157121352, x_root = -1224987083, y_root = 0, state = 12684288, keycode = 3070234612, same_screen = 157121352}, xbutton = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, root = 157121352, subwindow = 161377240, time = 0, x = -1227024267, y = 157121352, x_root = -1224987083, y_root = 0, state = 12684288, button = 3070234612, same_screen = 157121352}, xmotion = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, root = 157121352, subwindow = 161377240, time = 0, x = -1227024267, y = 157121352, x_root = -1224987083, y_root = 0, state = 12684288, is_hint = -12 '\364', same_screen = 157121352}, xcrossing = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, root = 157121352, subwindow = 161377240, time = 0, x = -1227024267, y = 157121352, x_root = -1224987083, y_root = 0, mode = 12684288, detail = -1224732684, same_screen = 157121352, focus = 161377240, state = 3069808511}, xfocus = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, mode = 157121352, detail = 161377240}, xexpose = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, x = 157121352, y = 161377240, width = 0, height = -1227024267, count = 157121352}, xgraphicsexpose = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, drawable = 3070234612, x = 157121352, y = 161377240, width = 0, height = -1227024267, count = 157121352, major_code = -1224987083, minor_code = 0}, xnoexpose = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, drawable = 3070234612, major_code = 157121352, minor_code = 161377240}, xvisibility = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, state = 157121352}, xcreatewindow = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, parent = 3070234612, window = 157121352, x = 161377240, y = 0, width = -1227024267, height = 157121352, border_width = -1224987083, override_redirect = 0}, xdestroywindow = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, event = 3070234612, window = 157121352}, xunmap = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, event = 3070234612, window = 157121352, from_configure = 161377240}, xmap = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, event = 3070234612, window = 157121352, override_redirect = 161377240}, xmaprequest = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, parent = 3070234612, window = 157121352}, xreparent = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, event = 3070234612, window = 157121352, parent = 161377240, x = 0, y = -1227024267, override_redirect = 157121352}, xconfigure = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, event = 3070234612, window = 157121352, x = 161377240, y = 0, width = -1227024267, height = 157121352, border_width = -1224987083, above = 0, override_redirect = 12684288}, xgravity = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, event = 3070234612, window = 157121352, x = 161377240, y = 0}, xresizerequest = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, width = 157121352, height = 161377240}, xconfigurerequest = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, parent = 3070234612, window = 157121352, x = 161377240, y = 0, width = -1227024267, height = 157121352, border_width = -1224987083, above = 0, detail = 12684288, value_mask = 3070234612}, xcirculate = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, event = 3070234612, window = 157121352, place = 161377240}, xcirculaterequest = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, parent = 3070234612, window = 157121352, place = 161377240}, xproperty = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, atom = 157121352, time = 161377240, state = 0}, xselectionclear = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, selection = 157121352, time = 161377240}, xselectionrequest = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, owner = 3070234612, requestor = 157121352, selection = 161377240, target = 0, property = 3067943029, time = 157121352}, xselection = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, requestor = 3070234612, selection = 157121352, target = 161377240, property = 0, time = 3067943029}, xcolormap = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, colormap = 157121352, new = 161377240, state = 0}, xclient = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, message_type = 157121352, format = 161377240, data = {b = "\000\000\000\000u\030\335\266H{]\t5.\374\266\000\000\000", s = {0, 0, 6261, -18723, 31560, 2397, 11829, -18692, 0, 0}, l = {0, -1227024267, 157121352, -1224987083, 0}}}, xmapping = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, request = 157121352, first_keycode = 161377240, count = 0}, xerror = {type = -1225028333, display = 0x4ffb326c, resourceid = 3069938963, serial = 3067940489, error_code = 244 '\364', request_code = 15 '\017', minor_code = 0 '\000'}, xkeymap = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, window = 3070234612, key_vector = "H{]\t\330k\236\t\000\000\000\000u\030\335\266H{]\t5.\374\266\000\000\000\000\000\214\301"}, xgeneric = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, extension = -1224732684, evtype = 157121352}, xcookie = {type = -1225028333, serial = 1341862508, send_event = -1225028333, display = 0xb6dd0e89, extension = -1224732684, evtype = 157121352, cookie = 161377240, data = 0x0}, pad = {-1225028333, 1341862508, -1225028333, -1227026807, -1224732684, 157121352, 161377240, 0, -1227024267, 157121352, -1224987083, 0, 12684288, -1224732684, 157121352, 161377240, -1225158785, 157121352, 602, -1073857188, 1334817237, -1107296256, 1066525540, 165643208}} >#38 0xb6d01544 in glutMainLoop () at freeglut_main.c:1533 > window = <optimized out> > action = <optimized out> >#39 0xb6f9aeab in launch (options=<optimized out>, own_the_options=<optimized out>) at layer5/main.c:1955 > I = 0x99e6bd8 > multisample_mask = <optimized out> > theWindow = 1 > G = 0x95d7b48 > own_the_options = 1 >#40 was_main () at layer5/main.c:2006 > options = <optimized out> >#41 0xb6f60b6f in CmdRunPyMOL (self=<PyCObject at remote 0xb76e6758>, args=(<PyCObject at remote 0xb76e6758>, 0)) at layer4/Cmd.c:4771 > block_input_hook = 0 >#42 0x4feae01d in PyCFunction_Call (func=func@entry=<built-in method runpymol of PyCObject object at remote 0xb76e67b8>, arg=arg@entry=(<PyCObject at remote 0xb76e6758>, 0), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.3/Objects/methodobject.c:116 > f = 0xb74328ac > meth = 0xb6f60af0 <CmdRunPyMOL> > self = <PyCObject at remote 0xb76e67b8> > size = <optimized out> >#43 0x4ff0d0fb in call_function (oparg=<optimized out>, pp_stack=0xbffe4164) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4098 > callargs = (<PyCObject at remote 0xb76e6758>, 0) > flags = 1 > tstate = <optimized out> > func = <built-in method runpymol of PyCObject object at remote 0xb76e67b8> > w = <optimized out> > na = 2 > nk = <optimized out> > n = 156409936 > pfunc = 0x987338c > x = <optimized out> >#44 PyEval_EvalFrameEx (f=f@entry=Frame 0x987324c, for file /usr/lib/python2.7/site-packages/pymol/__init__.py, line 470, in start_pymol (block_input_hook=0, _COb=<PyCObject at remote 0xb76e6758>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0x9873390 > stack_pointer = <optimized out> > next_instr = 0xb76bdf56 "\001d" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x2> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0x9873384 > freevars = 0x987338c > retval = 0x0 > tstate = 0x952a050 > co = 0xb76b9e78 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0xb76bdf34 "t" > names = ('prime_pymol', '_cmd', '_get_global_C_object', 'runpymol') > consts = (None,) >#45 0x4ff0e049 in PyEval_EvalCodeEx (co=co@entry=0xb76b9e78, globals=globals@entry={'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated), locals=locals@entry=0x0, args=0x95adf90, argcount=argcount@entry=1, kws=0x95adf94, kwcount=0, defs=0xb76ea1f8, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0x987324c, for file /usr/lib/python2.7/site-packages/pymol/__init__.py, line 470, in start_pymol (block_input_hook=0, _COb=<PyCObject at remote 0xb76e6758>) > retval = 0x0 > fastlocals = 0x9873384 > freevars = 0x987338c > tstate = 0x952a050 > x = <optimized out> > u = <optimized out> >#46 0x4ff0c30d in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0xbffe4344, func=<function at remote 0x989510c>) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4194 > co = 0xb76b9e78 > nd = 1 > globals = {'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated) > argdefs = <optimized out> > d = <optimized out> >#47 call_function (oparg=<optimized out>, pp_stack=0xbffe4344) at /usr/src/debug/Python-2.7.3/Python/ceval.c:4119 > func = <function at remote 0x989510c> > w = <optimized out> > na = 1 > nk = <optimized out> > n = 1 > pfunc = 0x95adf8c > x = <optimized out> >#48 PyEval_EvalFrameEx (f=f@entry=Frame 0x95ade54, for file /usr/lib/python2.7/site-packages/pymol/__init__.py, line 491, in <module> (), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:2740 > sp = 0x95adf94 > stack_pointer = <optimized out> > next_instr = 0x95cc0e2 "\001n\250" > opcode = <optimized out> > oparg = <optimized out> > why = WHY_NOT > err = 0 > x = <unknown at remote 0x1> > v = <optimized out> > w = <optimized out> > u = <optimized out> > t = <optimized out> > stream = 0x0 > fastlocals = 0x95adf8c > freevars = 0x95adf8c > retval = 0x0 > tstate = 0x952a050 > co = 0xb76d4068 > instr_ub = -1 > instr_lb = 0 > instr_prev = -1 > first_instr = 0x95cbb0c "d" > names = ('copy', '__main__', '__name__', 'invocation', '_init_internals', 'hasattr', 'pymol_launch', 'thread', 'threading', 'os', 'sys', 're', 'string', 'time', 'traceback', 'math', 'environ', 'has_key', '__file__', 'pymol_file', 'getcwd', 'sub', 'pymol_path', 'path', 'isdir', 'NameError', 'argv', 'pymol_argv', 'try_again', 'pymol', 'ImportError', 'exc_clear', 'insert', 'dirname', 'globals', 'None', '_once', 'CmdException', 'Scratch_Storage', 'Session_Storage', 'modules', 'platform', 'loc2', 'exists', 'loc1', 'setcheckinterval', 'join', 'test_path', 'freemol_libpy', 'append', 'exec_str', 'exec_deferred', 'adapt_to_hardware', 'launch_gui', 'prime_pymol', 'start_pymol', '_cmd', 'cmd', 'thread_launch', '_get_global_C_object', '_COb', 'parse_args', 'xwin', 'finish_launching') > consts = (-1, None, '__main__', <code at remote 0xb76c0cc8>, 'pymol_launch', 2, 3, 'PYMOL_PATH', 0, 1, '\\', '/', ':', '[\\/\\\\][^\\/\\\\]*$', '', '[\\/\\\\]modules[\\/\\\\]pymol[\\/\\\\]__init__\\.py[c]*$', 'pymol_argv', 'pymol', '-q', 4, '_once', 'CmdException', <code at remote 0xb76b99f8>, 'Scratch_Storage', <code at remote 0xb76b9a88>, 'Session_Storage', <code at remote 0xb76b9b18>, 'win32', '/modules', '/modules/numeric', 'FREEMOL', 'freemol', 'libpy', <code at remote 0xb76b9ba8>, <code at remote 0xb76b9c38>, <code at remote 0xb76b9cc8>, <code at remote 0xb76b9d58>, <code at remote 0xb76b9de8>, <code at remote 0xb76b9e78>, <code at remote 0xb76b9f08>, ('invocation',), 'DISPLAY', ('*',), <code at remote 0xb76b9f98>, ('\\', '/'), (), (...), (...)) >#49 0x4ff0e049 in PyEval_EvalCodeEx (co=co@entry=0xb76d4068, globals=globals@entry={'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated), locals=locals@entry={'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated), args=args@entry=0x0, argcount=argcount@entry=0, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.3/Python/ceval.c:3330 > f = Frame 0x95ade54, for file /usr/lib/python2.7/site-packages/pymol/__init__.py, line 491, in <module> () > retval = 0x0 > fastlocals = 0x95adf8c > freevars = 0x95adf8c > tstate = 0x952a050 > x = <optimized out> > u = <optimized out> >#50 0x4ff0e1c4 in PyEval_EvalCode (co=co@entry=0xb76d4068, globals=globals@entry={'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated), locals=locals@entry={'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated)) at /usr/src/debug/Python-2.7.3/Python/ceval.c:689 >No locals. >#51 0x4ff271ab in run_mod (mod=<optimized out>, filename=filename@entry=0xbffe49a4 "/usr/lib/python2.7/site-packages/pymol/__init__.py", globals=globals@entry={'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated), locals=locals@entry={'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated), flags=flags@entry=0xbffe457c, arena=arena@entry=0x9592ec0) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1361 > co = 0xb76d4068 > v = <optimized out> >#52 0x4ff2816c in PyRun_FileExFlags (fp=fp@entry=0x95ade48, filename=filename@entry=0xbffe49a4 "/usr/lib/python2.7/site-packages/pymol/__init__.py", start=start@entry=257, globals=globals@entry={'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated), locals=locals@entry={'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated), closeit=closeit@entry=1, flags=flags@entry=0xbffe457c) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:1347 > ret = <optimized out> > mod = <optimized out> > arena = 0x9592ec0 >#53 0x4ff28d12 in PyRun_SimpleFileExFlags (fp=fp@entry=0x95ade48, filename=filename@entry=0xbffe49a4 "/usr/lib/python2.7/site-packages/pymol/__init__.py", closeit=closeit@entry=1, flags=flags@entry=0xbffe457c) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:951 > m = <optimized out> > d = {'cmd': <module at remote 0x9837524>, '__main__': <module at remote 0xb7730494>, 'start_pymol': <function at remote 0x989510c>, '_cmd': <module at remote 0xb76e6704>, '__package__': None, 're': <module at remote 0xb772332c>, 'pymol_argv': ['/usr/lib/python2.7/site-packages/pymol/__init__.py', '/home/pgannett/Downloads/b_hp_mmp_nwi_best.pdb'], 'invocation': <module at remote 0xb76e69d4>, '__doc__': None, 'math': <module at remote 0xb742d2e4>, 'string': <module at remote 0xb742d5cc>, '__builtins__': <module at remote 0xb773011c>, '__file__': '/usr/lib/python2.7/site-packages/pymol/__init__.py', 'try_again': 0, 'sys': <module at remote 0xb77302e4>, '_init_internals': <function at remote 0xb76d28b4>, 'copy': <module at remote 0xb76c2bcc>, 'glutThread': -1216936256, 'pymol_launch': 1, 'thread': <module at remote 0xb76c2a4c>, 'thread_launch': <function at remote 0x989517c>, '__name__': '__main__', 'traceback': <module at remote 0xb7730a1c>, 'pymol': <module at remote 0xb76e66ec>, 'prime_pymol': <function at remote ...(truncated) > v = <optimized out> > ext = <optimized out> > set_file_name = 1 > ret = <optimized out> > len = <optimized out> >#54 0x4ff299a8 in PyRun_AnyFileExFlags (fp=fp@entry=0x95ade48, filename=filename@entry=0xbffe49a4 "/usr/lib/python2.7/site-packages/pymol/__init__.py", closeit=closeit@entry=1, flags=flags@entry=0xbffe457c) at /usr/src/debug/Python-2.7.3/Python/pythonrun.c:755 >No locals. >#55 0x4ff3b1e2 in Py_Main (argc=argc@entry=3, argv=argv@entry=0xbffe46b4) at /usr/src/debug/Python-2.7.3/Modules/main.c:639 > c = <optimized out> > sts = <optimized out> > command = 0x0 > filename = 0xbffe49a4 "/usr/lib/python2.7/site-packages/pymol/__init__.py" > module = 0x0 > fp = 0x95ade48 > p = <optimized out> > unbuffered = 0 > skipfirstline = 0 > stdin_is_interactive = 0 > help = 1342026268 > version = 1 > saw_unbuffered_flag = 0 > cf = {cf_flags = 0} >#56 0x08048578 in main (argc=3, argv=0xbffe46b4) at /usr/src/debug/Python-2.7.3/Modules/python.c:23 >No locals. >From To Syms Read Shared Object Library >0x4fe66020 0x4ff52154 Yes /lib/libpython2.7.so.1.0 >0x4f4f16a0 0x4f4fce60 Yes /lib/libpthread.so.0 >0x4f509ad0 0x4f50aaec Yes /lib/libdl.so.2 >0x41d0ba90 0x41d0c540 Yes /lib/libutil.so.1 >0x4f51f470 0x4f5396d8 Yes /lib/libm.so.6 >0x4f34ff20 0x4f48ffec Yes /lib/libc.so.6 >0x4f312850 0x4f32ae87 Yes /lib/ld-linux.so.2 >0xb74a80c0 0xb74a92e4 Yes /usr/lib/python2.7/lib-dynload/timemodule.so >0xb749fe30 0xb74a2904 Yes /usr/lib/python2.7/lib-dynload/stropmodule.so >0xb7497480 0xb749a5d0 Yes /usr/lib/python2.7/lib-dynload/math.so >0xb6d54740 0xb6f9b5b4 Yes /usr/lib/python2.7/site-packages/pymol/_cmd.so >0x426608f0 0x426a8054 Yes /lib/libGL.so.1 >0x41d13ea0 0x41d6ffa4 Yes /lib/libGLU.so.1 >0xb6cf4e20 0xb6d07d04 Yes /lib/libglut.so.3 >0x4fa6fd60 0x4fa8ec64 Yes /lib/libpng15.so.15 >0x4f5496e0 0x4f556a7c Yes /lib/libz.so.1 >0x44030610 0x4409f694 Yes /lib/libfreetype.so.6 >0x41025600 0x4104c784 Yes /lib/libGLEW.so.1.6 >0x4fd69600 0x4fddb814 Yes /lib/libstdc++.so.6 >0x4f72b020 0x4f741b64 Yes /lib/libgcc_s.so.1 >0x426e53c0 0x426faa1c Yes /lib/libglapi.so.0 >0x4fa0e880 0x4fa19154 Yes /lib/libXext.so.6 >0x410d5850 0x410d6214 Yes /lib/libXdamage.so.1 >0x4fe3df70 0x4fe403cc Yes /lib/libXfixes.so.3 >0x41f95430 0x41f95584 Yes /lib/libX11-xcb.so.1 >0x4f8e6410 0x4f975984 Yes /lib/libX11.so.6 >0x427820f0 0x4278b8e4 Yes /lib/libxcb-glx.so.0 >0x4f8aff70 0x4f8c0514 Yes /lib/libxcb.so.1 >0x41b89b90 0x41b8c710 Yes /lib/libXxf86vm.so.1 >0x424d3680 0x424d9754 Yes /lib/libdrm.so.2 >0x4fcd88f0 0x4fce2f24 Yes /lib/libXi.so.6 >0x4f5648e0 0x4f576d94 Yes /lib/libselinux.so.1 >0x4f8cca60 0x4f8cd92c Yes /lib/libXau.so.6 >0x4f511920 0x4f51543c Yes /lib/librt.so.1 >0xb77857c0 0xb77885d4 Yes /usr/lib/python2.7/lib-dynload/_struct.so >0xb777daa0 0xb777fe50 Yes /usr/lib/python2.7/lib-dynload/binascii.so >0xb7778fd0 0xb777a020 Yes /usr/lib/python2.7/lib-dynload/cStringIO.so >0xb7485620 0xb7490734 Yes /usr/lib/python2.7/lib-dynload/cPickle.so >0xb747efa0 0xb747fda4 Yes /usr/lib/python2.7/lib-dynload/_hashlib.so >0x41c1e000 0x41c556f4 Yes /lib/libssl.so.10 >0x417a3f80 0x4188d544 Yes /lib/libcrypto.so.10 >0x41bd3e90 0x41c04434 Yes /lib/libgssapi_krb5.so.2 >0x41a3daf0 0x41ac0de4 Yes /lib/libkrb5.so.3 >0x410f5f20 0x410f6ca4 Yes /lib/libcom_err.so.2 >0x41b11b40 0x41b2c224 Yes /lib/libk5crypto.so.3 >0x4f5866b0 0x4f594ea4 Yes /lib/libresolv.so.2 >0x41b3eee0 0x41b44724 Yes /lib/libkrb5support.so.0 >0x4191fd30 0x41920a7c Yes /lib/libkeyutils.so.1 >0xb6ce6c40 0xb6ce7928 Yes /usr/lib/python2.7/lib-dynload/_randommodule.so >0xb6cdf150 0xb6ce1474 Yes /usr/lib/python2.7/lib-dynload/operator.so >0xb6c15d50 0xb6c17a08 Yes /usr/lib/python2.7/lib-dynload/zlibmodule.so >0xb6bf7350 0xb6c071e4 Yes /usr/lib/python2.7/lib-dynload/_io.so >0xb6bef9e0 0xb6bf08d4 Yes /usr/lib/python2.7/lib-dynload/fcntlmodule.so >0xb6540790 0xb68822d4 Yes /usr/lib/dri/nouveau_dri.so >0x4f6cf090 0x4f6d2794 Yes /lib/libffi.so.5 >0x4fc011b0 0x4fc1a434 Yes /lib/libexpat.so.1 >0xb6509290 0xb650bd1c Yes /lib/libdrm_nouveau.so.1 >0xb52e2580 0xb6000d14 Yes /usr/lib/llvm/libLLVM-3.0.so >0xb7478540 0xb747ad34 Yes /usr/lib/python2.7/lib-dynload/_collectionsmodule.so >0xb651d870 0xb652270c Yes /usr/lib/python2.7/lib-dynload/itertoolsmodule.so >0xb7773780 0xb7773eb8 Yes /usr/lib/python2.7/lib-dynload/_bisectmodule.so >0xb74728b0 0xb7473a00 Yes /usr/lib/python2.7/lib-dynload/_heapq.so >0xb65118a0 0xb65178a4 Yes /usr/lib/python2.7/lib-dynload/_tkinter.so >0xb43c2c70 0xb43f252c Yes /usr/lib/tcl8.5/libTix.so >0xb429dec0 0xb437d6f8 Yes /lib/libtk8.5.so >0xb417fbd0 0xb4250c00 Yes /lib/libtcl8.5.so >0xb4158fa0 0xb4167104 Yes /lib/libXft.so.2 >0x440cf0e0 0x440ea7e4 Yes /lib/libfontconfig.so.1 >0x4fa9c3c0 0x4faa2264 Yes /lib/libXrender.so.1 >0xb3949a40 0xb3950e7c Yes /lib/libnss_files.so.2 >0xb3711db0 0xb3718304 Yes /usr/lib/python2.7/lib-dynload/_socketmodule.so >0xb370cb20 0xb370d590 Yes /usr/lib/python2.7/lib-dynload/_functoolsmodule.so >0xb3706280 0xb3709194 Yes /usr/lib/python2.7/lib-dynload/_ssl.so >$1 = 0xb7772000 "" >No symbol "__glib_assert_msg" in current context. >eax 0x0 0 >ecx 0x685b 26715 >edx 0x6 6 >ebx 0x685b 26715 >esp 0xbffe2af4 0xbffe2af4 >ebp 0xa1f063c 0xa1f063c >esi 0xb7772000 -1216929792 >edi 0x4f4e6ff4 1330540532 >eip 0xb778e424 0xb778e424 <__kernel_vsyscall+16> >eflags 0x200202 [ IF ID ] >cs 0x73 115 >ss 0x7b 123 >ds 0x7b 123 >es 0x7b 123 >fs 0x0 0 >gs 0x33 51 >Dump of assembler code for function __kernel_vsyscall: > 0xb778e414 <+0>: push %ecx > 0xb778e415 <+1>: push %edx > 0xb778e416 <+2>: push %ebp > 0xb778e417 <+3>: mov %esp,%ebp > 0xb778e419 <+5>: sysenter > 0xb778e41b <+7>: nop > 0xb778e41c <+8>: nop > 0xb778e41d <+9>: nop > 0xb778e41e <+10>: nop > 0xb778e41f <+11>: nop > 0xb778e420 <+12>: nop > 0xb778e421 <+13>: nop > 0xb778e422 <+14>: int $0x80 >=> 0xb778e424 <+16>: pop %ebp > 0xb778e425 <+17>: pop %edx > 0xb778e426 <+18>: pop %ecx > 0xb778e427 <+19>: ret >End of assembler dump.
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