Attachment 839000 Details for Bug 1045044 – Crash report of sage

Crash report of sage

Sage_crash_report.txt (text/plain), 12.59 KB, created by maldun.finsterschreck on 2013-12-19 14:15:03 UTC

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Creator: maldun.finsterschreck

Created: 2013-12-19 14:15:03 UTC

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patch

obsolete

>***************************************************************************
>
>IPython post-mortem report
>
>{'commit_hash': '858d539',
> 'commit_source': 'installation',
> 'default_encoding': 'UTF-8',
> 'ipython_path': '/usr/lib/python2.7/site-packages/IPython',
> 'ipython_version': '0.13.2',
> 'os_name': 'posix',
> 'platform': 'Linux-3.11.9-200.fc19.x86_64-x86_64-with-fedora-19-Schr\xc3\xb6dinger\xe2\x80\x99s_Cat',
> 'sys_executable': '/usr/bin/python',
> 'sys_platform': 'linux2',
> 'sys_version': '2.7.5 (default, Nov 12 2013, 16:18:42) \n[GCC 4.8.2 20131017 (Red Hat 4.8.2-1)]'}
>
>***************************************************************************
>
>
>
>***************************************************************************
>
>Crash traceback:
>
>---------------------------------------------------------------------------
>ImportError                                   Python 2.7.5: /usr/bin/python
>                                                   Thu Dec 19 15:12:49 2013
>A problem occured executing Python code.  Here is the sequence of function
>calls leading up to the error, with the most recent (innermost) call last.
>/usr/lib64/sagemath/local/bin/sage-ipython in <module>()
>      1 #!/usr/bin/env python
>      2 # -*- coding: utf-8 -*-
>      3 """
>      4 Sage IPython startup script.
>      5 """
>      6 from sage.misc.interpreter import SageTerminalApp
>      7 
>      8 # Make sure we're using the Sage profile if one isn't specified.
>      9 import sys
>     10 if '--profile' not in sys.argv:
>     11     sys.argv.extend(['--profile', 'sage'])
>     12 
>     13 app = SageTerminalApp.instance()
>---> 14 app.initialize()
>        global app.initialize = <bound method SageTerminalApp.initialize of <sage.misc.interpreter.SageTerminalApp object at 0x7f6bc2096210>>
>     15 app.start()
>
>/usr/lib/python2.7/site-packages/IPython/frontend/terminal/ipapp.pyc in initialize(self=<sage.misc.interpreter.SageTerminalApp object>, argv=None)
>
>/usr/lib/python2.7/site-packages/IPython/config/application.pyc in catch_config_error(method=<function initialize>, app=<sage.misc.interpreter.SageTerminalApp object>, *args=(None,), **kwargs={})
>     69 
>     70 #-----------------------------------------------------------------------------
>     71 # Application class
>     72 #-----------------------------------------------------------------------------
>     73 
>     74 @decorator
>     75 def catch_config_error(method, app, *args, **kwargs):
>     76     """Method decorator for catching invalid config (Trait/ArgumentErrors) during init.
>     77 
>     78     On a TraitError (generally caused by bad config), this will print the trait's
>     79     message, and exit the app.
>     80     
>     81     For use on init methods, to prevent invoking excepthook on invalid input.
>     82     """
>     83     try:
>---> 84         return method(app, *args, **kwargs)
>        method = <function initialize at 0x7f6bb54aaf50>
>        app = <sage.misc.interpreter.SageTerminalApp object at 0x7f6bc2096210>
>        args = (None,)
>        kwargs = {}
>     85     except (TraitError, ArgumentError) as e:
>     86         app.print_description()
>     87         app.print_help()
>     88         app.print_examples()
>     89         app.log.fatal("Bad config encountered during initialization:")
>     90         app.log.fatal(str(e))
>     91         app.log.debug("Config at the time: %s", app.config)
>     92         app.exit(1)
>     93 
>     94 
>     95 class ApplicationError(Exception):
>     96     pass
>     97 
>     98 
>     99 class Application(SingletonConfigurable):
>
>/usr/lib/python2.7/site-packages/IPython/frontend/terminal/ipapp.pyc in initialize(self=<sage.misc.interpreter.SageTerminalApp object>, argv=None)
>    309     
>    310     @catch_config_error
>    311     def initialize(self, argv=None):
>    312         """Do actions after construct, but before starting the app."""
>    313         super(TerminalIPythonApp, self).initialize(argv)
>    314         if self.subapp is not None:
>    315             # don't bother initializing further, starting subapp
>    316             return
>    317         if not self.ignore_old_config:
>    318             check_for_old_config(self.ipython_dir)
>    319         # print self.extra_args
>    320         if self.extra_args and not self.something_to_run:
>    321             self.file_to_run = self.extra_args[0]
>    322         self.init_path()
>    323         # create the shell
>--> 324         self.init_shell()
>        self.init_shell = <bound method SageTerminalApp.init_shell of <sage.misc.interpreter.SageTerminalApp object at 0x7f6bc2096210>>
>    325         # and draw the banner
>    326         self.init_banner()
>    327         # Now a variety of things that happen after the banner is printed.
>    328         self.init_gui_pylab()
>    329         self.init_extensions()
>    330         self.init_code()
>    331 
>    332     def init_shell(self):
>    333         """initialize the InteractiveShell instance"""
>    334         # Create an InteractiveShell instance.
>    335         # shell.display_banner should always be False for the terminal
>    336         # based app, because we call shell.show_banner() by hand below
>    337         # so the banner shows *before* all extension loading stuff.
>    338         self.shell = TerminalInteractiveShell.instance(config=self.config,
>    339                         display_banner=False, profile_dir=self.profile_dir,
>
>/usr/lib64/python2.7/site-packages/sage/misc/interpreter.pyc in init_shell(self=<sage.misc.interpreter.SageTerminalApp object>)
>    721             sage: from sage.misc.interpreter import SageTerminalApp, DEFAULT_SAGE_CONFIG
>    722             sage: app = SageTerminalApp(config=DEFAULT_SAGE_CONFIG)
>    723             sage: app.initialize(argv=[])  # indirect doctest
>    724             sage: app.shell
>    725             <sage.misc.interpreter.SageInteractiveShell object at 0x...>
>    726         """
>    727         # We need verbose crashes for the Sage crash handler.  We set it here
>    728         # so that we don't overwrite the traitlet attribute
>    729         self.verbose_crash = True
>    730 
>    731         # Shell initialization
>    732         self.shell = SageInteractiveShell.instance(config=self.config,
>    733                         display_banner=False, profile_dir=self.profile_dir,
>    734                         ipython_dir=self.ipython_dir)
>    735         self.shell.configurables.append(self)
>--> 736         self.shell.extension_manager.load_extension('sage.misc.sage_extension')
>        self.shell.extension_manager.load_extension = <bound method ExtensionManager.load_extension of <IPython.core.extensions.ExtensionManager object at 0x7f6bb505c9d0>>
>
>/usr/lib/python2.7/site-packages/IPython/core/extensions.pyc in load_extension(self=<IPython.core.extensions.ExtensionManager object>, module_str='sage.misc.sage_extension')
>     75 
>     76     def _on_ipython_dir_changed(self):
>     77         if not os.path.isdir(self.ipython_extension_dir):
>     78             os.makedirs(self.ipython_extension_dir, mode = 0777)
>     79 
>     80     def load_extension(self, module_str):
>     81         """Load an IPython extension by its module name.
>     82 
>     83         If :func:`load_ipython_extension` returns anything, this function
>     84         will return that object.
>     85         """
>     86         from IPython.utils.syspathcontext import prepended_to_syspath
>     87 
>     88         if module_str not in sys.modules:
>     89             with prepended_to_syspath(self.ipython_extension_dir):
>---> 90                 __import__(module_str)
>        global __import__ = undefined
>        module_str = 'sage.misc.sage_extension'
>     91         mod = sys.modules[module_str]
>     92         return self._call_load_ipython_extension(mod)
>     93 
>     94     def unload_extension(self, module_str):
>     95         """Unload an IPython extension by its module name.
>     96 
>     97         This function looks up the extension's name in ``sys.modules`` and
>     98         simply calls ``mod.unload_ipython_extension(self)``.
>     99         """
>    100         if module_str in sys.modules:
>    101             mod = sys.modules[module_str]
>    102             self._call_unload_ipython_extension(mod)
>    103 
>    104     def reload_extension(self, module_str):
>    105         """Reload an IPython extension by calling reload.
>
>/usr/lib64/python2.7/site-packages/sage/misc/sage_extension.py in <module>()
>     35     2
>     36 
>     37 In contrast, input to the ``%time`` magic command is preparsed::
>     38 
>     39     sage: shell.run_cell('%time 594.factor()')
>     40     CPU times: user ...
>     41     Wall time: ...
>     42     2 * 3^3 * 11
>     43 """
>     44 
>     45 from IPython.core.hooks import TryNext
>     46 from IPython.core.magic import Magics, magics_class, line_magic
>     47 import os
>     48 import sys
>     49 import sage
>---> 50 import sage.all
>        global sage.all = undefined
>     51 from sage.misc.interpreter import preparser
>     52 from sage.misc.preparser import preparse
>     53 
>     54 @magics_class
>     55 class SageMagics(Magics):
>     56 
>     57     @line_magic
>     58     def runfile(self, s):
>     59         r"""     
>     60         Loads the code contained in the file ``s``. This is designed
>     61         to be used from the command line as ``%runfile /path/to/file``.
>     62 
>     63         :param s: file to be loaded
>     64         :type s: string
>     65 
>
>/usr/lib64/python2.7/site-packages/sage/all.py in <module>()
>     75 import sage.ext.c_lib
>     76 sage.ext.c_lib._init_csage()
>     77 sig_on_count = sage.ext.c_lib._sig_on_reset
>     78 
>     79 from time                import sleep
>     80 
>     81 import sage.misc.lazy_import
>     82 from sage.misc.all       import *         # takes a while
>     83 
>     84 from sage.misc.sh import sh
>     85 
>     86 from sage.libs.all       import *
>     87 from sage.doctest.all    import *
>     88 
>     89 from sage.rings.all      import *
>---> 90 from sage.matrix.all     import *
>        global sage.matrix.all = undefined
>     91 
>     92 # This must come before Calculus -- it initializes the Pynac library.
>     93 import sage.symbolic.pynac
>     94 
>     95 from sage.modules.all    import *
>     96 from sage.monoids.all    import *
>     97 from sage.algebras.all   import *
>     98 from sage.modular.all    import *
>     99 from sage.schemes.all    import *
>    100 from sage.graphs.all     import *
>    101 from sage.groups.all     import *
>    102 from sage.databases.all  import *
>    103 from sage.structure.all  import *
>    104 from sage.categories.all import *
>    105 from sage.sets.all       import *
>
>/usr/lib64/python2.7/site-packages/sage/matrix/all.py in <module>()
>----> 1 from matrix_space import MatrixSpace, is_MatrixSpace
>        global matrix_space = undefined
>        global MatrixSpace = undefined
>        global is_MatrixSpace = undefined
>      2 from constructor import matrix, Matrix, column_matrix, random_matrix, diagonal_matrix, identity_matrix, block_matrix, block_diagonal_matrix, jordan_block, zero_matrix, ones_matrix, elementary_matrix, companion_matrix
>      3 from matrix import is_Matrix
>      4 from berlekamp_massey import berlekamp_massey
>      5 
>      6 
>      7 Mat = MatrixSpace
>      8 
>
>/usr/lib64/python2.7/site-packages/sage/matrix/matrix_space.pyc in <module>()
>     22     sage: matrix(GF(11),2,2,sparse=True)
>     23     [0 0]
>     24     [0 0]
>     25 """
>     26 
>     27 # System imports
>     28 import types
>     29 import weakref
>     30 import operator
>     31 
>     32 # Sage matrix imports
>     33 import matrix
>     34 import matrix_generic_dense
>     35 import matrix_generic_sparse
>     36 
>---> 37 import matrix_modn_dense
>        global matrix_modn_dense = undefined
>     38 import matrix_modn_sparse
>     39 
>     40 import matrix_mod2_dense
>     41 import matrix_mod2e_dense
>     42 
>     43 import matrix_integer_dense
>     44 import matrix_integer_sparse
>     45 
>     46 import matrix_rational_dense
>     47 import matrix_rational_sparse
>     48 
>     49 import matrix_mpolynomial_dense
>     50 
>     51 #import padics.matrix_padic_capped_relative_dense
>     52 
>
>/home/reiteres/sage/sage-5.11/matrix_modn_dense_template_header.pxi in init sage.matrix.matrix_modn_dense (sage/matrix/matrix_modn_dense.c:13937)()
>
>/home/reiteres/sage/sage-5.11/matrix_integer_dense.pxd in init sage.matrix.matrix_modn_dense_float (sage/matrix/matrix_modn_dense_float.cpp:17222)()
>
>/home/reiteres/sage/sage-5.11/linbox.pxd in init sage.matrix.matrix_integer_dense (sage/matrix/matrix_integer_dense.c:42562)()
>
>ImportError: /lib64/liblinboxsage.so.0: undefined symbol: clapack_dgetrf
>
>***************************************************************************
>
>History of session input:
>*** Last line of input (may not be in above history):

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Attachments on bug 1045044: 839000