Attachment 897043 Details for Bug 1098958 – File: backtrace

File: backtrace

backtrace (text/plain), 91.12 KB, created by Piraeus on 2014-05-19 08:44:28 UTC

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Creator: Piraeus

Created: 2014-05-19 08:44:28 UTC

Size: 91.12 KB

patch

obsolete

>warning: core file may not match specified executable file.
>[New LWP 5159]
>[New LWP 5160]
>[Thread debugging using libthread_db enabled]
>Using host libthread_db library "/lib64/libthread_db.so.1".
>Core was generated by `/usr/bin/python /usr/lib64/python2.7/site-packages/pymol/__init__.py'.
>Program terminated with signal 6, Aborted.
>#0  0x000000384b6359e9 in __GI_raise (sig=sig@entry=6) at ../nptl/sysdeps/unix/sysv/linux/raise.c:56
>56	  return INLINE_SYSCALL (tgkill, 3, pid, selftid, sig);
>
>Thread 2 (Thread 0x7f58f7b2e700 (LWP 5160)):
>#0  0x000000384b6ed553 in select () at ../sysdeps/unix/syscall-template.S:81
>No locals.
>#1  0x00007f58f83ee694 in Sleep (milli=<optimized out>) at /usr/src/debug/Python-2.7.5/Modules/_tkinter.c:313
>        t = {tv_sec = 0, tv_usec = 5523}
>#2  0x00007f58f83ee883 in Tkapp_MainLoop (selfptr=<tkapp at remote 0x26a3098>, args=<optimized out>) at /usr/src/debug/Python-2.7.5/Modules/_tkinter.c:2651
>        _save = 0x25c66a0
>        result = 0
>        threshold = 0
>        self = 0x26a3098
>        tstate = 0x25c66a0
>#3  0x000000385deddcee in call_function (oparg=<optimized out>, pp_stack=0x7f58f7b2d0f0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4098
>        flags = <optimized out>
>        tstate = 0x25c66a0
>        func = <built-in method mainloop of tkapp object at remote 0x26a3098>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x7f58f063f328
>        x = <optimized out>
>#4  PyEval_EvalFrameEx (f=f@entry=Frame 0x7f58f063f1a0, for file /usr/lib64/python2.7/lib-tk/Tkinter.py, line 1068, in mainloop (self=<Tk(_tclCommands=['tkerror', 'exit', '39918400destroy', '140019963565952trace_w', '140019963566192trace_w', '140019964609872trace_w', '140019964610192trace_w', '140019964610432trace_w', '140019964610672trace_w', '140019964610912trace_w', '140019964611152trace_w', '140019964611392trace_w', '140019964611712trace_w', '140019964611952trace_w', '140019964622400trace_w', '140019964624080trace_w', '140019964640624trace_w', '140019964640864trace_w', '140019964648416trace_w', '140019964648656trace_w', '140019964648896trace_w', '140019964649136trace_w', '140019964649376trace_w', '140019964657904trace_w', '140019964658144trace_w', '140019964658384trace_w', '140019964658624trace_w', '140019964658864trace_w', '140019964679744trace_w', '140019964680144trace_w', '140019964680384trace_w', '140019964680624trace_w', '140019964680864trace_w', '140019964681104trace_w', '140019964681344trace_w', '140019964681584trace_w', '140019964...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x7f58f063f330
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7f58f063f318
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#5  0x000000385dedec7d in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=1, kws=0x7f58f063ec00, kwcount=0, defs=0x263e528, defcount=1, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x7f58f063f1a0, for file /usr/lib64/python2.7/lib-tk/Tkinter.py, line 1068, in mainloop (self=<Tk(_tclCommands=['tkerror', 'exit', '39918400destroy', '140019963565952trace_w', '140019963566192trace_w', '140019964609872trace_w', '140019964610192trace_w', '140019964610432trace_w', '140019964610672trace_w', '140019964610912trace_w', '140019964611152trace_w', '140019964611392trace_w', '140019964611712trace_w', '140019964611952trace_w', '140019964622400trace_w', '140019964624080trace_w', '140019964640624trace_w', '140019964640864trace_w', '140019964648416trace_w', '140019964648656trace_w', '140019964648896trace_w', '140019964649136trace_w', '140019964649376trace_w', '140019964657904trace_w', '140019964658144trace_w', '140019964658384trace_w', '140019964658624trace_w', '140019964658864trace_w', '140019964679744trace_w', '140019964680144trace_w', '140019964680384trace_w', '140019964680624trace_w', '140019964680864trace_w', '140019964681104trace_w', '140019964681344trace_w', '140019964681584trace_w', '140019964...(truncated)
>        retval = 0x0
>        fastlocals = 0x7f58f063f318
>        freevars = 0x7f58f063f328
>        tstate = 0x25c66a0
>        x = <optimized out>
>        u = <optimized out>
>#6  0x000000385dedd769 in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0x7f58f7b2d2f0, func=<function at remote 0x26417d0>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#7  call_function (oparg=<optimized out>, pp_stack=0x7f58f7b2d2f0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4119
>        func = <function at remote 0x26417d0>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0x7f58f063ebf8
>        x = <optimized out>
>#8  PyEval_EvalFrameEx (f=f@entry=Frame 0x7f58f063ea60, for file /usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py, line 195, in run (self=<PMGApp(_MegaArchetype__componentAliases={}, initializePlugins=<instancemethod at remote 0x26111e0>, _dynamicGroups=(), frameHeight=168, skinNameList=['demo', 'normal'], menuBar=<MenuBar(_MegaArchetype__componentAliases={}, _dynamicGroups=('Menu', 'Button'), _MegaArchetype__componentInfo={'Program-menu': (<Menu(widgetName='menu', _w='.140019963332008.140019963571376.140019963571880.140019963589984', _tclCommands=['140019963587312_resetHelpmessage'], _name='140019963589984', master=<Menu(widgetName='menu', _w='.140019963332008.140019963571376.140019963571880', _tclCommands=['140019963585952_resetHelpmessage', '140019963593344<lambda>', '140019963593504<lambda>', '140019964608592<lambda>', '140019964611552<lambda>'], _name='140019963571880', master=<Menubutton(widgetName='menubutton', _w='.140019963332008.140019963571376', _tclCommands=['140019963565792<lambda>', '140019963585072<lambda>', '140019963585232...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x7f58f063ec00
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7f58f063ebd8
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#9  0x000000385dedec7d in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=2, kws=0x7f58f0001090, kwcount=0, defs=0x2657628, defcount=1, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x7f58f063ea60, for file /usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py, line 195, in run (self=<PMGApp(_MegaArchetype__componentAliases={}, initializePlugins=<instancemethod at remote 0x26111e0>, _dynamicGroups=(), frameHeight=168, skinNameList=['demo', 'normal'], menuBar=<MenuBar(_MegaArchetype__componentAliases={}, _dynamicGroups=('Menu', 'Button'), _MegaArchetype__componentInfo={'Program-menu': (<Menu(widgetName='menu', _w='.140019963332008.140019963571376.140019963571880.140019963589984', _tclCommands=['140019963587312_resetHelpmessage'], _name='140019963589984', master=<Menu(widgetName='menu', _w='.140019963332008.140019963571376.140019963571880', _tclCommands=['140019963585952_resetHelpmessage', '140019963593344<lambda>', '140019963593504<lambda>', '140019964608592<lambda>', '140019964611552<lambda>'], _name='140019963571880', master=<Menubutton(widgetName='menubutton', _w='.140019963332008.140019963571376', _tclCommands=['140019963565792<lambda>', '140019963585072<lambda>', '140019963585232...(truncated)
>        retval = 0x0
>        fastlocals = 0x7f58f063ebd8
>        freevars = 0x7f58f063ebf8
>        tstate = 0x25c66a0
>        x = <optimized out>
>        u = <optimized out>
>#10 0x000000385dedd769 in fast_function (nk=<optimized out>, na=2, n=2, pp_stack=0x7f58f7b2d4f0, func=<function at remote 0x26a4140>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#11 call_function (oparg=<optimized out>, pp_stack=0x7f58f7b2d4f0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4119
>        func = <function at remote 0x26a4140>
>        w = <optimized out>
>        na = 2
>        nk = <optimized out>
>        n = 2
>        pfunc = 0x7f58f0001080
>        x = <optimized out>
>#12 PyEval_EvalFrameEx (f=f@entry=Frame 0x7f58f0000ef0, for file /usr/lib64/python2.7/site-packages/pmg_tk/__init__.py, line 35, in run (pymol_instance=<module at remote 0x7f58fcbd4910>, poll=0, skin='normal'), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x7f58f0001090
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7f58f0001068
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#13 0x000000385dedec7d in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=args@entry=0x24f5518, argcount=3, kws=kws@entry=0x7f5903288068, kwcount=kwcount@entry=0, defs=defs@entry=0x2653068, defcount=defcount@entry=2, closure=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x7f58f0000ef0, for file /usr/lib64/python2.7/site-packages/pmg_tk/__init__.py, line 35, in run (pymol_instance=<module at remote 0x7f58fcbd4910>, poll=0, skin='normal')
>        retval = 0x0
>        fastlocals = 0x7f58f0001068
>        freevars = 0x7f58f0001080
>        tstate = 0x25c66a0
>        x = <optimized out>
>        u = <optimized out>
>#14 0x000000385de6dd7d in function_call (func=<function at remote 0x26a2938>, arg=(<module at remote 0x7f58fcbd4910>, 0, 'normal'), kw={}) at /usr/src/debug/Python-2.7.5/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = ()
>        d = 0x2653068
>        k = 0x7f5903288068
>        nk = 0
>        nd = 2
>#15 0x000000385de49dd3 in PyObject_Call (func=func@entry=<function at remote 0x26a2938>, arg=arg@entry=(<module at remote 0x7f58fcbd4910>, 0, 'normal'), kw=kw@entry={}) at /usr/src/debug/Python-2.7.5/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x385de6dc10 <function_call>
>#16 0x000000385ded9f1d in ext_do_call (nk=<optimized out>, na=<optimized out>, flags=<optimized out>, pp_stack=0x7f58f7b2d7b0, func=<function at remote 0x26a2938>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4411
>        kwdict = {}
>        nstar = <optimized out>
>        callargs = <optimized out>
>        stararg = (<module at remote 0x7f58fcbd4910>, 0, 'normal')
>        result = 0x0
>#17 PyEval_EvalFrameEx (f=f@entry=Frame 0x7f58f0000d20, for file /usr/lib64/python2.7/threading.py, line 764, in run (self=<Thread(_Thread__ident=140020089546496, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f59032493d0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f59032493d0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f59032493d0>) at remote 0x26a03d0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f5903249230>, acquire=<built-in method acquire of thread.lock object at remote 0x7f5903249230>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f5903249230>) at remote 0x26a0310>) at remote 0x2657e10>, _Thread__stderr=<module at remote 0x19a3590>, _Thread__target=<function at remote 0x26a2938>, _Thread__kwargs={}, _Verbos...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2779
>        flags = <optimized out>
>        func = <function at remote 0x26a2938>
>        na = <optimized out>
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x7f58f0000ea0
>        sp = 0x7f58f0000ea8
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7f58f0000e98
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#18 0x000000385dedd80c in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0x7f58f7b2d910, func=<function at remote 0x7f58fcbdf2a8>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4184
>        retval = 0x0
>        fastlocals = 0x7f58f0000e98
>        i = <optimized out>
>        f = Frame 0x7f58f0000d20, for file /usr/lib64/python2.7/threading.py, line 764, in run (self=<Thread(_Thread__ident=140020089546496, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f59032493d0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f59032493d0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f59032493d0>) at remote 0x26a03d0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f5903249230>, acquire=<built-in method acquire of thread.lock object at remote 0x7f5903249230>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f5903249230>) at remote 0x26a0310>) at remote 0x2657e10>, _Thread__stderr=<module at remote 0x19a3590>, _Thread__target=<function at remote 0x26a2938>, _Thread__kwargs={}, _Verbos...(truncated)
>        tstate = 0x25c66a0
>        stack = <optimized out>
>        co = <optimized out>
>        nd = 0
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = 0x0
>#19 call_function (oparg=<optimized out>, pp_stack=0x7f58f7b2d910) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4119
>        func = <function at remote 0x7f58fcbdf2a8>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0x7f58f0000c78
>        x = <optimized out>
>#20 PyEval_EvalFrameEx (f=f@entry=Frame 0x7f58f0000ae0, for file /usr/lib64/python2.7/threading.py, line 811, in __bootstrap_inner (self=<Thread(_Thread__ident=140020089546496, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f59032493d0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f59032493d0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f59032493d0>) at remote 0x26a03d0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f5903249230>, acquire=<built-in method acquire of thread.lock object at remote 0x7f5903249230>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f5903249230>) at remote 0x26a0310>) at remote 0x2657e10>, _Thread__stderr=<module at remote 0x19a3590>, _Thread__target=<function at remote 0x26a2938>, _Thread__kwar...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x7f58f0000c80
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7f58f0000c58
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#21 0x000000385dedd80c in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0x7f58f7b2da70, func=<function at remote 0x7f58fcbdf410>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4184
>        retval = 0x0
>        fastlocals = 0x7f58f0000c58
>        i = <optimized out>
>        f = Frame 0x7f58f0000ae0, for file /usr/lib64/python2.7/threading.py, line 811, in __bootstrap_inner (self=<Thread(_Thread__ident=140020089546496, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f59032493d0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f59032493d0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f59032493d0>) at remote 0x26a03d0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f5903249230>, acquire=<built-in method acquire of thread.lock object at remote 0x7f5903249230>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f5903249230>) at remote 0x26a0310>) at remote 0x2657e10>, _Thread__stderr=<module at remote 0x19a3590>, _Thread__target=<function at remote 0x26a2938>, _Thread__kwar...(truncated)
>        tstate = 0x25c66a0
>        stack = <optimized out>
>        co = <optimized out>
>        nd = 0
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = 0x0
>#22 call_function (oparg=<optimized out>, pp_stack=0x7f58f7b2da70) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4119
>        func = <function at remote 0x7f58fcbdf410>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0x7f58f0000a90
>        x = <optimized out>
>#23 PyEval_EvalFrameEx (f=f@entry=Frame 0x7f58f0000910, for file /usr/lib64/python2.7/threading.py, line 784, in __bootstrap (self=<Thread(_Thread__ident=140020089546496, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f59032493d0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f59032493d0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f59032493d0>) at remote 0x26a03d0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f5903249230>, acquire=<built-in method acquire of thread.lock object at remote 0x7f5903249230>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f5903249230>) at remote 0x26a0310>) at remote 0x2657e10>, _Thread__stderr=<module at remote 0x19a3590>, _Thread__target=<function at remote 0x26a2938>, _Thread__kwargs={},...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x7f58f0000a98
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7f58f0000a88
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#24 0x000000385dedec7d in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=args@entry=0x24ae7a8, argcount=1, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x7f58f0000910, for file /usr/lib64/python2.7/threading.py, line 784, in __bootstrap (self=<Thread(_Thread__ident=140020089546496, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f59032493d0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f59032493d0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f59032493d0>) at remote 0x26a03d0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f5903249230>, acquire=<built-in method acquire of thread.lock object at remote 0x7f5903249230>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f5903249230>) at remote 0x26a0310>) at remote 0x2657e10>, _Thread__stderr=<module at remote 0x19a3590>, _Thread__target=<function at remote 0x26a2938>, _Thread__kwargs={},...(truncated)
>        retval = 0x0
>        fastlocals = 0x7f58f0000a88
>        freevars = 0x7f58f0000a90
>        tstate = 0x25c66a0
>        x = <optimized out>
>        u = <optimized out>
>#25 0x000000385de6dca0 in function_call (func=<function at remote 0x7f58fcbdf320>, arg=(<Thread(_Thread__ident=140020089546496, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f59032493d0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f59032493d0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f59032493d0>) at remote 0x26a03d0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f5903249230>, acquire=<built-in method acquire of thread.lock object at remote 0x7f5903249230>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f5903249230>) at remote 0x26a0310>) at remote 0x2657e10>, _Thread__stderr=<module at remote 0x19a3590>, _Thread__target=<function at remote 0x26a2938>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0x7f58fcbd4910>, 0, 'normal'), _Threa...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.5/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = 0x0
>        d = 0x0
>        k = 0x0
>        nk = 0
>        nd = 0
>#26 0x000000385de49dd3 in PyObject_Call (func=func@entry=<function at remote 0x7f58fcbdf320>, arg=arg@entry=(<Thread(_Thread__ident=140020089546496, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f59032493d0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f59032493d0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f59032493d0>) at remote 0x26a03d0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f5903249230>, acquire=<built-in method acquire of thread.lock object at remote 0x7f5903249230>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f5903249230>) at remote 0x26a0310>) at remote 0x2657e10>, _Thread__stderr=<module at remote 0x19a3590>, _Thread__target=<function at remote 0x26a2938>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0x7f58fcbd4910>, 0, 'normal'), _Threa...(truncated), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.5/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x385de6dc10 <function_call>
>#27 0x000000385de58555 in instancemethod_call (func=<function at remote 0x7f58fcbdf320>, arg=(<Thread(_Thread__ident=140020089546496, _Thread__block=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f59032493d0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f59032493d0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f59032493d0>) at remote 0x26a03d0>, _Thread__name='Thread-1', _Thread__daemonic=1, _Thread__started=<_Event(_Verbose__verbose=False, _Event__flag=True, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f5903249230>, acquire=<built-in method acquire of thread.lock object at remote 0x7f5903249230>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f5903249230>) at remote 0x26a0310>) at remote 0x2657e10>, _Thread__stderr=<module at remote 0x19a3590>, _Thread__target=<function at remote 0x26a2938>, _Thread__kwargs={}, _Verbose__verbose=False, _Thread__args=(<module at remote 0x7f58fcbd4910>, 0, 'normal'), _Threa...(truncated), kw=0x0) at /usr/src/debug/Python-2.7.5/Objects/classobject.c:2602
>        self = <optimized out>
>        klass = <optimized out>
>        result = <optimized out>
>#28 0x000000385de49dd3 in PyObject_Call (func=func@entry=<instancemethod at remote 0x260fc30>, arg=arg@entry=(), kw=<optimized out>) at /usr/src/debug/Python-2.7.5/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x385de584b0 <instancemethod_call>
>#29 0x000000385ded8af7 in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0x260fc30>, arg=(), kw=<optimized out>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3967
>        result = <optimized out>
>#30 0x000000385df0c282 in t_bootstrap (boot_raw=0x25db510) at /usr/src/debug/Python-2.7.5/Modules/threadmodule.c:614
>        boot = 0x25db510
>        tstate = 0x25c66a0
>        res = <optimized out>
>#31 0x000000384be07c53 in start_thread (arg=0x7f58f7b2e700) at pthread_create.c:308
>        __res = <optimized out>
>        pd = 0x7f58f7b2e700
>        now = <optimized out>
>        unwind_buf = {cancel_jmp_buf = {{jmp_buf = {140020089546496, 3428294600635872238, 0, 140020089547200, 140020089546496, 140020281012851, -3377048108523686930, 3450645747751482350}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}}
>        not_first_call = <optimized out>
>        pagesize_m1 = <optimized out>
>        sp = <optimized out>
>        freesize = <optimized out>
>#32 0x000000384b6f5dbd in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:113
>No locals.
>
>Thread 1 (Thread 0x7f59032c8740 (LWP 5159)):
>#0  0x000000384b6359e9 in __GI_raise (sig=sig@entry=6) at ../nptl/sysdeps/unix/sysv/linux/raise.c:56
>        resultvar = 0
>        pid = 5159
>        selftid = 5159
>#1  0x000000384b6370f8 in __GI_abort () at abort.c:90
>        save_stage = 2
>        act = {__sigaction_handler = {sa_handler = 0x0, sa_sigaction = 0x0}, sa_mask = {__val = {241783237971, 41262880, 45, 241786663392, 241838058352, 45, 241783239919, 22406448, 241786663392, 1, 45, 45, 41255768, 1, 241783197261, 41255768}}, sa_flags = 0, sa_restorer = 0x2774cb8}
>        sigs = {__val = {32, 0 <repeats 15 times>}}
>#2  0x000000384ea60565 in __gnu_cxx::__verbose_terminate_handler () at ../../../../libstdc++-v3/libsupc++/vterminate.cc:95
>        terminating = true
>        t = <optimized out>
>#3  0x000000384ea5e6c6 in __cxxabiv1::__terminate (handler=<optimized out>) at ../../../../libstdc++-v3/libsupc++/eh_terminate.cc:38
>No locals.
>#4  0x000000384ea5e6f3 in std::terminate () at ../../../../libstdc++-v3/libsupc++/eh_terminate.cc:48
>No locals.
>#5  0x000000384ea5f1df in __cxxabiv1::__cxa_pure_virtual () at ../../../../libstdc++-v3/libsupc++/pure.cc:50
>No locals.
>#6  0x000000380eecef71 in llvm::BumpPtrAllocator::DeallocateSlabs (this=0x2774cb8, Slab=<optimized out>) at Allocator.cpp:72
>        NextSlab = 0x0
>#7  0x000000380f16c362 in ~ScalarEvolution (this=0x2774b60, __in_chrg=<optimized out>) at /usr/src/debug/llvm-3.3.src/include/llvm/Analysis/ScalarEvolution.h:172
>No locals.
>#8  llvm::ScalarEvolution::~ScalarEvolution (this=0x2774b60, __in_chrg=<optimized out>) at /usr/src/debug/llvm-3.3.src/include/llvm/Analysis/ScalarEvolution.h:172
>No locals.
>#9  0x000000380f595a96 in llvm::PMDataManager::~PMDataManager (this=0x2759f20, __in_chrg=<optimized out>) at PassManager.cpp:1261
>        I = 0x2788908
>#10 0x000000380f59d845 in ~FPPassManager (this=0x2759f00, __in_chrg=<optimized out>) at /usr/src/debug/llvm-3.3.src/include/llvm/PassManagers.h:408
>No locals.
>#11 llvm::FPPassManager::~FPPassManager (this=0x2759f00, __in_chrg=<optimized out>) at /usr/src/debug/llvm-3.3.src/include/llvm/PassManagers.h:408
>No locals.
>#12 0x000000380f595dae in llvm::PMTopLevelManager::~PMTopLevelManager (this=0x2759d78, __in_chrg=<optimized out>) at PassManager.cpp:798
>        I = 0x2759db0
>#13 0x000000380f59df49 in ~FunctionPassManagerImpl (this=0x2759c00, __in_chrg=<optimized out>) at PassManager.cpp:217
>No locals.
>#14 llvm::FunctionPassManagerImpl::~FunctionPassManagerImpl (this=0x2759c00, __in_chrg=<optimized out>) at PassManager.cpp:217
>No locals.
>#15 0x000000380f5959c1 in llvm::FunctionPassManager::~FunctionPassManager (this=0x2567f70, __in_chrg=<optimized out>) at PassManager.cpp:1377
>No locals.
>#16 0x000000380f6df856 in ~JITState (this=0x2567f70, __in_chrg=<optimized out>) at JIT.h:30
>No locals.
>#17 llvm::JIT::removeModule (this=0x2758290, M=0x161c450) at JIT.cpp:365
>        result = true
>        locked = {M = @0x2758358}
>#18 0x000000380f3b3442 in LLVMRemoveModule (EE=<optimized out>, M=0x161c450, OutMod=OutMod@entry=0x7fff04254820, OutError=OutError@entry=0x7fff04254828) at ExecutionEngineBindings.cpp:294
>No locals.
>#19 0x000000380f3b3455 in LLVMRemoveModuleProvider (EE=<optimized out>, MP=<optimized out>, OutMod=OutMod@entry=0x7fff04254820, OutError=OutError@entry=0x7fff04254828) at ExecutionEngineBindings.cpp:304
>No locals.
>#20 0x00007f58f987b357 in free_gallivm_state (gallivm=gallivm@entry=0x25676d0) at gallivm/lp_bld_init.c:200
>        mod = 0x1afaad0
>        error = 0x274e750 "\260\224\257\001"
>#21 0x00007f58f987b6b9 in gallivm_destroy (gallivm=0x25676d0) at gallivm/lp_bld_init.c:554
>No locals.
>#22 0x00007f58f989776f in draw_llvm_destroy_variant (variant=0x2721320) at draw/draw_llvm.c:1974
>        llvm = 0x1afaad0
>#23 0x00007f58f9897f4f in vs_llvm_delete (dvs=0x274e750) at draw/draw_vs_llvm.c:73
>        next = 0x274ef40
>        shader = 0x274e750
>        li = <optimized out>
>#24 0x00007f58f97149d8 in delete_vp_variant (vpv=0x2568730, st=0x1ae1290, st=0x1ae1290) at ../../src/mesa/state_tracker/st_program.c:69
>No locals.
>#25 0x00007f58f97151a5 in st_release_vp_variants (st=0x1ae1290, stvp=stvp@entry=0x273c0d0) at ../../src/mesa/state_tracker/st_program.c:90
>        next = 0x0
>        vpv = <optimized out>
>#26 0x00007f58f96ed4d5 in st_delete_program (ctx=0x1aa0820, prog=0x273c0d0) at ../../src/mesa/state_tracker/st_cb_program.c:131
>        stvp = 0x273c0d0
>        st = <optimized out>
>#27 0x00007f58f9792c2e in _mesa_reference_program_ (ctx=ctx@entry=0x1aa0820, ptr=ptr@entry=0x2575ab0, prog=prog@entry=0x0) at ../../../src/mesa/program/program.c:421
>        deleteFlag = <optimized out>
>#28 0x00007f58f97846d5 in _mesa_reference_program (prog=0x0, ptr=0x2575ab0, ctx=0x1aa0820) at ../../../src/mesa/program/program.h:102
>No locals.
>#29 clear_cache (ctx=ctx@entry=0x1aa0820, cache=cache@entry=0x1a508c0, shader=shader@entry=0 '\000') at ../../../src/mesa/program/prog_cache.c:126
>        c = 0x2575aa0
>        next = 0x25754f0
>        i = 6
>#30 0x00007f58f978486b in _mesa_delete_program_cache (ctx=ctx@entry=0x1aa0820, cache=0x1a508c0) at ../../../src/mesa/program/prog_cache.c:159
>No locals.
>#31 0x00007f58f9792ddb in _mesa_free_program_data (ctx=ctx@entry=0x1aa0820) at ../../../src/mesa/program/program.c:119
>No locals.
>#32 0x00007f58f9608fea in _mesa_free_context_data (ctx=ctx@entry=0x1aa0820) at ../../src/mesa/main/context.c:1166
>No locals.
>#33 0x00007f58f96f2ed6 in st_destroy_context (st=0x1ae1290) at ../../src/mesa/state_tracker/st_context.c:310
>        pipe = 0x1a63e40
>        cso = 0x1af83d0
>        ctx = 0x1aa0820
>        i = 4
>#34 0x00007f58f989b1e8 in dri_destroy_context (cPriv=<optimized out>) at dri_context.c:203
>        ctx = 0x14e6b10
>#35 0x00007f58f95e88b3 in driDestroyContext (pcp=0x14e6ad0) at ../../../../src/mesa/drivers/dri/common/dri_util.c:329
>No locals.
>#36 0x000000341aa3f8df in dri2_destroy_context (context=0x14e6930) at dri2_glx.c:150
>        pcp = 0x14e6930
>        psc = 0x1a3c560
>#37 0x000000341aa1c2a1 in glx_display_free (priv=priv@entry=0x150f560) at glxext.c:227
>        gc = <optimized out>
>#38 0x000000341aa1c325 in __glXCloseDisplay (dpy=0x1a2a3a0, codes=<optimized out>) at glxext.c:272
>        priv = <optimized out>
>        prev = <optimized out>
>#39 0x000000384e21fc22 in XCloseDisplay (dpy=0x1a2a3a0) at ClDisplay.c:65
>        ext = 0x150f5d0
>        i = <optimized out>
>#40 0x00000032e921fb97 in fgDeinitialize () at freeglut_init.c:524
>        timer = 0x0
>#41 0x000000384b639279 in __run_exit_handlers (status=status@entry=0, listp=0x384b9ba6e8 <__exit_funcs>, run_list_atexit=run_list_atexit@entry=true) at exit.c:77
>        atfct = <optimized out>
>        onfct = <optimized out>
>        cxafct = <optimized out>
>        f = <optimized out>
>#42 0x000000384b6392c5 in __GI_exit (status=status@entry=0) at exit.c:99
>No locals.
>#43 0x00007f58fb4b0575 in PExit (G=G@entry=0x150f3f0, code=0) at layer1/P.c:2504
>No locals.
>#44 0x00007f58fb61a8e5 in CmdQuit (self=<PyCObject at remote 0x7f58fcbe8d00>, args=<optimized out>) at layer4/Cmd.c:6775
>        G = 0x150f3f0
>        ok = 1
>        code = 0
>#45 0x000000385deddcee in call_function (oparg=<optimized out>, pp_stack=0x7fff04254c50) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4098
>        flags = <optimized out>
>        tstate = 0x13db0a0
>        func = <built-in method quit of PyCObject object at remote 0x7f58fcbe8df0>
>        w = <optimized out>
>        na = 2
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x27ef0e8
>        x = <optimized out>
>#46 PyEval_EvalFrameEx (f=f@entry=Frame 0x27eef50, for file /usr/lib64/python2.7/site-packages/pymol/internal.py, line 529, in _quit (code=0, _self=<module at remote 0x151eec0>, pymol=<module at remote 0x7f58fcbd4910>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x27ef0f0
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x27ef0c8
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#47 0x000000385dedec7d in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=1, kws=0x2939508, kwcount=0, defs=0x15dabf0, defcount=2, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x27eef50, for file /usr/lib64/python2.7/site-packages/pymol/internal.py, line 529, in _quit (code=0, _self=<module at remote 0x151eec0>, pymol=<module at remote 0x7f58fcbd4910>)
>        retval = 0x0
>        fastlocals = 0x27ef0c8
>        freevars = 0x27ef0e8
>        tstate = 0x13db0a0
>        x = <optimized out>
>        u = <optimized out>
>#48 0x000000385dedd769 in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0x7fff04254e50, func=<function at remote 0x165b6e0>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#49 call_function (oparg=<optimized out>, pp_stack=0x7fff04254e50) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4119
>        func = <function at remote 0x165b6e0>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0x29394f8
>        x = <optimized out>
>#50 PyEval_EvalFrameEx (f=f@entry=Frame 0x2939380, for file <string>, line 1, in <module> (), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x2939508
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x29394f8
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#51 0x000000385dedec7d in PyEval_EvalCodeEx (co=co@entry=0x7f58f02b64b0, globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated), args=args@entry=0x0, argcount=argcount@entry=0, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x2939380, for file <string>, line 1, in <module> ()
>        retval = 0x0
>        fastlocals = 0x29394f8
>        freevars = 0x29394f8
>        tstate = 0x13db0a0
>        x = <optimized out>
>        u = <optimized out>
>#52 0x000000385deded82 in PyEval_EvalCode (co=co@entry=0x7f58f02b64b0, globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated)) at /usr/src/debug/Python-2.7.5/Python/ceval.c:689
>No locals.
>#53 0x000000385def78af in run_mod (mod=<optimized out>, filename=filename@entry=0x385df204cd "<string>", globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated), flags=flags@entry=0x0, arena=arena@entry=0x27f85f0) at /usr/src/debug/Python-2.7.5/Python/pythonrun.c:1373
>        co = 0x7f58f02b64b0
>        v = <optimized out>
>#54 0x000000385def86c5 in PyRun_StringFlags (str=<optimized out>, start=start@entry=257, globals=globals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated), locals=locals@entry={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated), flags=0x0) at /usr/src/debug/Python-2.7.5/Python/pythonrun.c:1336
>        ret = 0x0
>        mod = <optimized out>
>        arena = 0x27f85f0
>#55 0x000000385dedcd09 in exec_statement (locals={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated), globals={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, 'CD': 14, 'CG1': 15,...(truncated), prog='cmd._quit(0)\n', f=Frame 0x7f58f083b5e0, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 464, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8,...(truncated)) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4831
>        tmp = 0x0
>        str = 0x7f58f071dc24 "cmd._quit(0)\n"
>        cf = {cf_flags = 0}
>        n = <optimized out>
>        v = <optimized out>
>        plain = 0
>#56 PyEval_EvalFrameEx (f=f@entry=Frame 0x7f58f083b5e0, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 464, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8,...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:1954
>        stack_pointer = 0x7f58f083b828
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = <optimized out>
>        x = None
>        v = None
>        w = None
>        u = ('cmd._quit(0)\n', {'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG2': 9, '2HD1': 3, 'HG11': 8, 'HG12': 4, 'HG13': 8, 'HA2': 18, '1HT': 2, 'CB': 13, 'CA': 12, '1HG1': 8, '...(truncated)
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x7f58f083b758
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#57 0x000000385dedec7d in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=3, kws=0x2567c20, kwcount=0, defs=0x0, defcount=0, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x7f58f083b5e0, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 464, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8,...(truncated)
>        retval = 0x0
>        fastlocals = 0x7f58f083b758
>        freevars = 0x7f58f083b828
>        tstate = 0x13db0a0
>        x = <optimized out>
>        u = <optimized out>
>#58 0x000000385dedd769 in fast_function (nk=<optimized out>, na=3, n=3, pp_stack=0x7fff042552f0, func=<function at remote 0x17f1ed8>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#59 call_function (oparg=<optimized out>, pp_stack=0x7fff042552f0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4119
>        func = <function at remote 0x17f1ed8>
>        w = <optimized out>
>        na = 3
>        nk = <optimized out>
>        n = 3
>        pfunc = 0x2567c08
>        x = <optimized out>
>#60 PyEval_EvalFrameEx (f=f@entry=Frame 0x25679c0, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 476, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x2567c20
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x2567b38
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#61 0x000000385dedec7d in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=3, kws=0x2567988, kwcount=0, defs=0x0, defcount=0, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x25679c0, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 476, in parse (self=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14, '1H': 2, 'O2': 22, 'O1': 21, '3HG1': 8, '3HG...(truncated)
>        retval = 0x0
>        fastlocals = 0x2567b38
>        freevars = 0x2567c08
>        tstate = 0x13db0a0
>        x = <optimized out>
>        u = <optimized out>
>#62 0x000000385dedd769 in fast_function (nk=<optimized out>, na=3, n=3, pp_stack=0x7fff042554f0, func=<function at remote 0x17f1ed8>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#63 call_function (oparg=<optimized out>, pp_stack=0x7fff042554f0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4119
>        func = <function at remote 0x17f1ed8>
>        w = <optimized out>
>        na = 3
>        nk = <optimized out>
>        n = 3
>        pfunc = 0x2567970
>        x = <optimized out>
>#64 PyEval_EvalFrameEx (f=f@entry=Frame 0x25677e0, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 596, in <lambda> (s='time.sleep(0.100);cmd._quit(0)', secure=0, p=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14...(truncated), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x2567988
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x2567958
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#65 0x000000385dedec7d in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=args@entry=0x7f58f0786a88, argcount=2, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x24ae828, defcount=defcount@entry=1, closure=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x25677e0, for file /usr/lib64/python2.7/site-packages/pymol/parser.py, line 596, in <lambda> (s='time.sleep(0.100);cmd._quit(0)', secure=0, p=<Parser(pymol_names={'lock_api_status': <_RLock(_Verbose__verbose=False, _RLock__owner=None, _RLock__block=<thread.lock at remote 0x7f59032491f0>, _RLock__count=0) at remote 0x1512890>, '_stdin_reader_thread': None, '__path__': ['/usr/lib64/python2.7/site-packages/pymol'], 'stored': <Scratch_Storage() at remote 0x1511ef0>, 'keyboard': <module at remote 0x19a30f8>, 'keywords': <module at remote 0x190b9f0>, 'start_pymol': <function at remote 0x1519320>, 'm4x': <module at remote 0x17d1360>, 'copy': <module at remote 0x7f58fcbc59f0>, 'feedingback': <module at remote 0x15f0718>, 'menu': <module at remote 0x24b5210>, 'wizard': <module at remote 0x7f58f02697f8>, 'shortcut': <module at remote 0x15245c8>, 'setting': <module at remote 0x1668398>, 'invocation': <module at remote 0x1517360>, 'string': <module at remote 0x7f58fcbd49f0>, 'bonds': {'ILE': [{'1HD1': 0, 'CD1': 14...(truncated)
>        retval = 0x0
>        fastlocals = 0x2567958
>        freevars = 0x2567970
>        tstate = 0x13db0a0
>        x = <optimized out>
>        u = <optimized out>
>#66 0x000000385de6dca0 in function_call (func=<function at remote 0x24e8320>, arg=('time.sleep(0.100);cmd._quit(0)', 0), kw=0x0) at /usr/src/debug/Python-2.7.5/Objects/funcobject.c:526
>        result = <optimized out>
>        argdefs = <optimized out>
>        kwtuple = 0x0
>        d = 0x24ae828
>        k = 0x0
>        nk = 0
>        nd = 1
>#67 0x000000385de49dd3 in PyObject_Call (func=func@entry=<function at remote 0x24e8320>, arg=arg@entry=('time.sleep(0.100);cmd._quit(0)', 0), kw=kw@entry=0x0) at /usr/src/debug/Python-2.7.5/Objects/abstract.c:2529
>        result = <optimized out>
>        call = 0x385de6dc10 <function_call>
>#68 0x000000385de49eb5 in call_function_tail (callable=<function at remote 0x24e8320>, args=('time.sleep(0.100);cmd._quit(0)', 0)) at /usr/src/debug/Python-2.7.5/Objects/abstract.c:2561
>        retval = <optimized out>
>#69 0x000000385de49f8e in PyObject_CallFunction (callable=<function at remote 0x24e8320>, format=format@entry=0x7f58fb6cbfa3 "si") at /usr/src/debug/Python-2.7.5/Objects/abstract.c:2585
>        va = {{gp_offset = 16, fp_offset = 48, overflow_arg_area = 0x7fff042557b0, reg_save_area = 0x7fff042556f0}}
>        args = <optimized out>
>#70 0x00007f58fb4b12fa in PFlush (G=G@entry=0x150f3f0) at layer1/P.c:2631
>        buffer = 0x2804408 "time.sleep(0.100);cmd._quit(0)"
>        size = 31
>        curSize = 31
>        err = <optimized out>
>        did_work = 1
>#71 0x00007f58fb6437e8 in PyMOL_Idle (I=0x1551f40) at layer5/PyMOL.c:4024
>        G = 0x150f3f0
>        did_work = 0
>#72 0x00007f58fb645215 in MainBusyIdle () at layer5/main.c:1283
>        G = 0x150f3f0
>        I = 0x1aeaba0
>#73 0x00000032e9222bfe in glutMainLoop () at freeglut_main.c:1592
>        window = <optimized out>
>        action = <optimized out>
>#74 0x00007f58fb64609f in launch (own_the_options=1, options=0x150ef60) at layer5/main.c:1773
>        I = 0x1aeaba0
>        multisample_mask = <optimized out>
>        theWindow = 1
>        G = 0x150f3f0
>#75 main_common () at layer5/main.c:1840
>        options = 0x150ef60
>#76 0x00007f58fb646acb in main_shared (block_input_hook=<optimized out>) at layer5/main.c:1827
>No locals.
>#77 0x00007f58fb616bd4 in CmdRunPyMOL (self=<PyCObject at remote 0x7f58fcbe8dc8>, args=<optimized out>) at layer4/Cmd.c:4434
>        block_input_hook = 0
>#78 0x000000385deddcee in call_function (oparg=<optimized out>, pp_stack=0x7fff04255ca0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4098
>        flags = <optimized out>
>        tstate = 0x13db0a0
>        func = <built-in method runpymol of PyCObject object at remote 0x7f58fcbe8df0>
>        w = <optimized out>
>        na = 2
>        nk = <optimized out>
>        n = <optimized out>
>        pfunc = 0x1593978
>        x = <optimized out>
>#79 PyEval_EvalFrameEx (f=f@entry=Frame 0x15937f0, for file /usr/lib64/python2.7/site-packages/pymol/__init__.py, line 484, in start_pymol (block_input_hook=0, _COb=<PyCObject at remote 0x7f58fcbe8dc8>), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x1593980
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x1593968
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#80 0x000000385dedec7d in PyEval_EvalCodeEx (co=<optimized out>, globals=<optimized out>, locals=locals@entry=0x0, args=<optimized out>, argcount=argcount@entry=1, kws=0x14a2318, kwcount=0, defs=0x1512328, defcount=1, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x15937f0, for file /usr/lib64/python2.7/site-packages/pymol/__init__.py, line 484, in start_pymol (block_input_hook=0, _COb=<PyCObject at remote 0x7f58fcbe8dc8>)
>        retval = 0x0
>        fastlocals = 0x1593968
>        freevars = 0x1593978
>        tstate = 0x13db0a0
>        x = <optimized out>
>        u = <optimized out>
>#81 0x000000385dedd769 in fast_function (nk=<optimized out>, na=1, n=1, pp_stack=0x7fff04255ea0, func=<function at remote 0x19a6de8>) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4194
>        co = <optimized out>
>        nd = <optimized out>
>        globals = <optimized out>
>        argdefs = <optimized out>
>        d = <optimized out>
>#82 call_function (oparg=<optimized out>, pp_stack=0x7fff04255ea0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:4119
>        func = <function at remote 0x19a6de8>
>        w = <optimized out>
>        na = 1
>        nk = <optimized out>
>        n = 1
>        pfunc = 0x14a2308
>        x = <optimized out>
>#83 PyEval_EvalFrameEx (f=f@entry=Frame 0x14a2190, for file /usr/lib64/python2.7/site-packages/pymol/__init__.py, line 511, in <module> (), throwflag=throwflag@entry=0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:2740
>        sp = 0x14a2318
>        stack_pointer = <optimized out>
>        next_instr = <optimized out>
>        opcode = <optimized out>
>        oparg = <optimized out>
>        why = 1
>        err = 0
>        x = <optimized out>
>        v = <optimized out>
>        w = <optimized out>
>        u = <optimized out>
>        t = <optimized out>
>        stream = 0x0
>        fastlocals = 0x14a2308
>        freevars = <optimized out>
>        retval = <optimized out>
>        tstate = <optimized out>
>        co = <optimized out>
>        instr_ub = -1
>        instr_lb = 0
>        instr_prev = -1
>        first_instr = <optimized out>
>        names = <optimized out>
>        consts = <optimized out>
>#84 0x000000385dedec7d in PyEval_EvalCodeEx (co=co@entry=0x7f59031ba330, globals=globals@entry={'cmd': <module at remote 0x151eec0>, '__main__': <module at remote 0x7f59032bcc58>, 'pymol_base': '/usr/lib64/python2.7/site-packages/pymol', 'start_pymol': <function at remote 0x19a6de8>, '_cmd': <module at remote 0x1517670>, '__package__': None, 're': <module at remote 0x7f5903200558>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0x1517360>, 'site_packages': '/usr/lib64/python2.7/site-packages', 'math': <module at remote 0x7f58fcbb6558>, 'string': <module at remote 0x7f58fcbd49f0>, '__builtins__': <module at remote 0x7f5903288b08>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'sys': <module at remote 0x7f5903288bb0>, '_init_internals': <function at remote 0x7f59031d1aa0>, 'copy': <module at remote 0x7f58fcbc59f0>, 'glutThread': 140020282066752, 'pymol_launch': 1, 'thread': <module at remote 0x7f59031d0088>, 'thread_launch': <function at remote 0x19a6e60>, '__name__': '__main__', 'traceback': <module at remote 0x7f59031f26a8>,...(truncated), locals=locals@entry={'cmd': <module at remote 0x151eec0>, '__main__': <module at remote 0x7f59032bcc58>, 'pymol_base': '/usr/lib64/python2.7/site-packages/pymol', 'start_pymol': <function at remote 0x19a6de8>, '_cmd': <module at remote 0x1517670>, '__package__': None, 're': <module at remote 0x7f5903200558>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0x1517360>, 'site_packages': '/usr/lib64/python2.7/site-packages', 'math': <module at remote 0x7f58fcbb6558>, 'string': <module at remote 0x7f58fcbd49f0>, '__builtins__': <module at remote 0x7f5903288b08>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'sys': <module at remote 0x7f5903288bb0>, '_init_internals': <function at remote 0x7f59031d1aa0>, 'copy': <module at remote 0x7f58fcbc59f0>, 'glutThread': 140020282066752, 'pymol_launch': 1, 'thread': <module at remote 0x7f59031d0088>, 'thread_launch': <function at remote 0x19a6e60>, '__name__': '__main__', 'traceback': <module at remote 0x7f59031f26a8>,...(truncated), args=args@entry=0x0, argcount=argcount@entry=0, kws=kws@entry=0x0, kwcount=kwcount@entry=0, defs=defs@entry=0x0, defcount=defcount@entry=0, closure=closure@entry=0x0) at /usr/src/debug/Python-2.7.5/Python/ceval.c:3330
>        f = Frame 0x14a2190, for file /usr/lib64/python2.7/site-packages/pymol/__init__.py, line 511, in <module> ()
>        retval = 0x0
>        fastlocals = 0x14a2308
>        freevars = 0x14a2308
>        tstate = 0x13db0a0
>        x = <optimized out>
>        u = <optimized out>
>#85 0x000000385deded82 in PyEval_EvalCode (co=co@entry=0x7f59031ba330, globals=globals@entry={'cmd': <module at remote 0x151eec0>, '__main__': <module at remote 0x7f59032bcc58>, 'pymol_base': '/usr/lib64/python2.7/site-packages/pymol', 'start_pymol': <function at remote 0x19a6de8>, '_cmd': <module at remote 0x1517670>, '__package__': None, 're': <module at remote 0x7f5903200558>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0x1517360>, 'site_packages': '/usr/lib64/python2.7/site-packages', 'math': <module at remote 0x7f58fcbb6558>, 'string': <module at remote 0x7f58fcbd49f0>, '__builtins__': <module at remote 0x7f5903288b08>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'sys': <module at remote 0x7f5903288bb0>, '_init_internals': <function at remote 0x7f59031d1aa0>, 'copy': <module at remote 0x7f58fcbc59f0>, 'glutThread': 140020282066752, 'pymol_launch': 1, 'thread': <module at remote 0x7f59031d0088>, 'thread_launch': <function at remote 0x19a6e60>, '__name__': '__main__', 'traceback': <module at remote 0x7f59031f26a8>,...(truncated), locals=locals@entry={'cmd': <module at remote 0x151eec0>, '__main__': <module at remote 0x7f59032bcc58>, 'pymol_base': '/usr/lib64/python2.7/site-packages/pymol', 'start_pymol': <function at remote 0x19a6de8>, '_cmd': <module at remote 0x1517670>, '__package__': None, 're': <module at remote 0x7f5903200558>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0x1517360>, 'site_packages': '/usr/lib64/python2.7/site-packages', 'math': <module at remote 0x7f58fcbb6558>, 'string': <module at remote 0x7f58fcbd49f0>, '__builtins__': <module at remote 0x7f5903288b08>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'sys': <module at remote 0x7f5903288bb0>, '_init_internals': <function at remote 0x7f59031d1aa0>, 'copy': <module at remote 0x7f58fcbc59f0>, 'glutThread': 140020282066752, 'pymol_launch': 1, 'thread': <module at remote 0x7f59031d0088>, 'thread_launch': <function at remote 0x19a6e60>, '__name__': '__main__', 'traceback': <module at remote 0x7f59031f26a8>,...(truncated)) at /usr/src/debug/Python-2.7.5/Python/ceval.c:689
>No locals.
>#86 0x000000385def78af in run_mod (mod=<optimized out>, filename=filename@entry=0x7fff04257807 "/usr/lib64/python2.7/site-packages/pymol/__init__.py", globals=globals@entry={'cmd': <module at remote 0x151eec0>, '__main__': <module at remote 0x7f59032bcc58>, 'pymol_base': '/usr/lib64/python2.7/site-packages/pymol', 'start_pymol': <function at remote 0x19a6de8>, '_cmd': <module at remote 0x1517670>, '__package__': None, 're': <module at remote 0x7f5903200558>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0x1517360>, 'site_packages': '/usr/lib64/python2.7/site-packages', 'math': <module at remote 0x7f58fcbb6558>, 'string': <module at remote 0x7f58fcbd49f0>, '__builtins__': <module at remote 0x7f5903288b08>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'sys': <module at remote 0x7f5903288bb0>, '_init_internals': <function at remote 0x7f59031d1aa0>, 'copy': <module at remote 0x7f58fcbc59f0>, 'glutThread': 140020282066752, 'pymol_launch': 1, 'thread': <module at remote 0x7f59031d0088>, 'thread_launch': <function at remote 0x19a6e60>, '__name__': '__main__', 'traceback': <module at remote 0x7f59031f26a8>,...(truncated), locals=locals@entry={'cmd': <module at remote 0x151eec0>, '__main__': <module at remote 0x7f59032bcc58>, 'pymol_base': '/usr/lib64/python2.7/site-packages/pymol', 'start_pymol': <function at remote 0x19a6de8>, '_cmd': <module at remote 0x1517670>, '__package__': None, 're': <module at remote 0x7f5903200558>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0x1517360>, 'site_packages': '/usr/lib64/python2.7/site-packages', 'math': <module at remote 0x7f58fcbb6558>, 'string': <module at remote 0x7f58fcbd49f0>, '__builtins__': <module at remote 0x7f5903288b08>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'sys': <module at remote 0x7f5903288bb0>, '_init_internals': <function at remote 0x7f59031d1aa0>, 'copy': <module at remote 0x7f58fcbc59f0>, 'glutThread': 140020282066752, 'pymol_launch': 1, 'thread': <module at remote 0x7f59031d0088>, 'thread_launch': <function at remote 0x19a6e60>, '__name__': '__main__', 'traceback': <module at remote 0x7f59031f26a8>,...(truncated), flags=flags@entry=0x7fff04256100, arena=arena@entry=0x14484e0) at /usr/src/debug/Python-2.7.5/Python/pythonrun.c:1373
>        co = 0x7f59031ba330
>        v = <optimized out>
>#87 0x000000385def89ce in PyRun_FileExFlags (fp=fp@entry=0x14b8ef0, filename=filename@entry=0x7fff04257807 "/usr/lib64/python2.7/site-packages/pymol/__init__.py", start=start@entry=257, globals=globals@entry={'cmd': <module at remote 0x151eec0>, '__main__': <module at remote 0x7f59032bcc58>, 'pymol_base': '/usr/lib64/python2.7/site-packages/pymol', 'start_pymol': <function at remote 0x19a6de8>, '_cmd': <module at remote 0x1517670>, '__package__': None, 're': <module at remote 0x7f5903200558>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0x1517360>, 'site_packages': '/usr/lib64/python2.7/site-packages', 'math': <module at remote 0x7f58fcbb6558>, 'string': <module at remote 0x7f58fcbd49f0>, '__builtins__': <module at remote 0x7f5903288b08>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'sys': <module at remote 0x7f5903288bb0>, '_init_internals': <function at remote 0x7f59031d1aa0>, 'copy': <module at remote 0x7f58fcbc59f0>, 'glutThread': 140020282066752, 'pymol_launch': 1, 'thread': <module at remote 0x7f59031d0088>, 'thread_launch': <function at remote 0x19a6e60>, '__name__': '__main__', 'traceback': <module at remote 0x7f59031f26a8>,...(truncated), locals=locals@entry={'cmd': <module at remote 0x151eec0>, '__main__': <module at remote 0x7f59032bcc58>, 'pymol_base': '/usr/lib64/python2.7/site-packages/pymol', 'start_pymol': <function at remote 0x19a6de8>, '_cmd': <module at remote 0x1517670>, '__package__': None, 're': <module at remote 0x7f5903200558>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0x1517360>, 'site_packages': '/usr/lib64/python2.7/site-packages', 'math': <module at remote 0x7f58fcbb6558>, 'string': <module at remote 0x7f58fcbd49f0>, '__builtins__': <module at remote 0x7f5903288b08>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'sys': <module at remote 0x7f5903288bb0>, '_init_internals': <function at remote 0x7f59031d1aa0>, 'copy': <module at remote 0x7f58fcbc59f0>, 'glutThread': 140020282066752, 'pymol_launch': 1, 'thread': <module at remote 0x7f59031d0088>, 'thread_launch': <function at remote 0x19a6e60>, '__name__': '__main__', 'traceback': <module at remote 0x7f59031f26a8>,...(truncated), closeit=closeit@entry=1, flags=flags@entry=0x7fff04256100) at /usr/src/debug/Python-2.7.5/Python/pythonrun.c:1359
>        ret = <optimized out>
>        mod = <optimized out>
>        arena = 0x14484e0
>#88 0x000000385def9b39 in PyRun_SimpleFileExFlags (fp=fp@entry=0x14b8ef0, filename=filename@entry=0x7fff04257807 "/usr/lib64/python2.7/site-packages/pymol/__init__.py", closeit=closeit@entry=1, flags=flags@entry=0x7fff04256100) at /usr/src/debug/Python-2.7.5/Python/pythonrun.c:951
>        m = <module at remote 0x7f59032bcc58>
>        d = {'cmd': <module at remote 0x151eec0>, '__main__': <module at remote 0x7f59032bcc58>, 'pymol_base': '/usr/lib64/python2.7/site-packages/pymol', 'start_pymol': <function at remote 0x19a6de8>, '_cmd': <module at remote 0x1517670>, '__package__': None, 're': <module at remote 0x7f5903200558>, 'pymol_argv': ['/usr/lib64/python2.7/site-packages/pymol/__init__.py'], 'invocation': <module at remote 0x1517360>, 'site_packages': '/usr/lib64/python2.7/site-packages', 'math': <module at remote 0x7f58fcbb6558>, 'string': <module at remote 0x7f58fcbd49f0>, '__builtins__': <module at remote 0x7f5903288b08>, '__file__': '/usr/lib64/python2.7/site-packages/pymol/__init__.py', 'sys': <module at remote 0x7f5903288bb0>, '_init_internals': <function at remote 0x7f59031d1aa0>, 'copy': <module at remote 0x7f58fcbc59f0>, 'glutThread': 140020282066752, 'pymol_launch': 1, 'thread': <module at remote 0x7f59031d0088>, 'thread_launch': <function at remote 0x19a6e60>, '__name__': '__main__', 'traceback': <module at remote 0x7f59031f26a8>,...(truncated)
>        v = <optimized out>
>        ext = 0x7fff04257837 "_.py"
>        set_file_name = 1
>        len = <optimized out>
>        ret = -1
>#89 0x000000385defa043 in PyRun_AnyFileExFlags (fp=fp@entry=0x14b8ef0, filename=filename@entry=0x7fff04257807 "/usr/lib64/python2.7/site-packages/pymol/__init__.py", closeit=closeit@entry=1, flags=flags@entry=0x7fff04256100) at /usr/src/debug/Python-2.7.5/Python/pythonrun.c:755
>No locals.
>#90 0x000000385df0a66f in Py_Main (argc=<optimized out>, argv=<optimized out>) at /usr/src/debug/Python-2.7.5/Modules/main.c:640
>        c = <optimized out>
>        sts = -1
>        command = 0x0
>        filename = 0x7fff04257807 "/usr/lib64/python2.7/site-packages/pymol/__init__.py"
>        module = 0x0
>        fp = 0x14b8ef0
>        p = <optimized out>
>        unbuffered = 0
>        skipfirstline = 0
>        stdin_is_interactive = 0
>        help = <optimized out>
>        version = <optimized out>
>        saw_unbuffered_flag = <optimized out>
>        cf = {cf_flags = 0}
>#91 0x000000384b621b45 in __libc_start_main (main=0x4006f0 <main>, argc=2, ubp_av=0x7fff042562b8, init=<optimized out>, fini=<optimized out>, rtld_fini=<optimized out>, stack_end=0x7fff042562a8) at libc-start.c:274
>        result = <optimized out>
>        unwind_buf = {cancel_jmp_buf = {{jmp_buf = {0, 3428294600635872238, 4196088, 140733262946992, 0, 0, -3427881928302627858, 3450646831110845422}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x384b20f4f3 <_dl_init+275>, 0x384b422208}, data = {prev = 0x0, cleanup = 0x0, canceltype = 1260451059}}}
>        not_first_call = <optimized out>
>#92 0x0000000000400721 in _start ()
>No symbol table info available.
>From                To                  Syms Read   Shared Object Library
>0x000000385de3f370  0x000000385df20330  Yes         /lib64/libpython2.7.so.1.0
>0x000000384be05790  0x000000384be103b4  Yes         /lib64/libpthread.so.0
>0x000000384ba00ed0  0x000000384ba019d0  Yes         /lib64/libdl.so.2
>0x000000386e000f10  0x000000386e001804  Yes         /lib64/libutil.so.1
>0x000000384c2054b0  0x000000384c26fbb8  Yes         /lib64/libm.so.6
>0x000000384b61f410  0x000000384b762740  Yes         /lib64/libc.so.6
>0x000000384b200ae0  0x000000384b21ac0a  Yes         /lib64/ld-linux-x86-64.so.2
>0x00007f58fc9a54b0  0x00007f58fc9a7b4c  Yes         /usr/lib64/python2.7/lib-dynload/_collectionsmodule.so
>0x00007f58fc79d070  0x00007f58fc79eb44  Yes         /usr/lib64/python2.7/lib-dynload/operator.so
>0x00007f58fc58cf10  0x00007f58fc591a48  Yes         /usr/lib64/python2.7/lib-dynload/itertoolsmodule.so
>0x00007f58fc385de0  0x00007f58fc386e64  Yes         /usr/lib64/python2.7/lib-dynload/_heapq.so
>0x00007f58fc180b20  0x00007f58fc181ba8  Yes         /usr/lib64/python2.7/lib-dynload/timemodule.so
>0x00007f58fbf79750  0x00007f58fbf7bec4  Yes         /usr/lib64/python2.7/lib-dynload/stropmodule.so
>0x00007f58fbd71500  0x00007f58fbd7473c  Yes         /usr/lib64/python2.7/lib-dynload/math.so
>0x00007f58fb416610  0x00007f58fb6afeec  Yes         /usr/lib64/python2.7/site-packages/pymol/_cmd.so
>0x0000003851604f50  0x00000038516200b0  Yes         /lib64/libpng15.so.15
>0x0000003851e0cec0  0x0000003851e75db0  Yes         /lib64/libfreetype.so.6
>0x00000034188385d0  0x000000341886ab10  Yes         /lib64/libGLEW.so.1.9
>0x000000341aa17100  0x000000341aa48db4  Yes         /lib64/libGL.so.1
>0x000000341e404830  0x000000341e45eb5c  Yes         /lib64/libGLU.so.1
>0x00000032e9217a50  0x00000032e92288cc  Yes         /lib64/libglut.so.3
>0x000000384ea5b510  0x000000384eabe50a  Yes         /lib64/libstdc++.so.6
>0x000000384ca02af0  0x000000384ca12218  Yes         /lib64/libgcc_s.so.1
>0x000000384c602170  0x000000384c60e5f0  Yes         /lib64/libz.so.1
>0x000000384e21df60  0x000000384e2a15ac  Yes         /lib64/libX11.so.6
>0x000000341ae08e20  0x000000341ae118d0  Yes         /lib64/libglapi.so.0
>0x000000384f203760  0x000000384f20ce70  Yes         /lib64/libXext.so.6
>0x000000385ae00bd0  0x000000385ae014ec  Yes         /lib64/libXdamage.so.1
>0x0000003850a01580  0x0000003850a037c8  Yes         /lib64/libXfixes.so.3
>0x0000003856e00600  0x0000003856e0070c  Yes         /lib64/libX11-xcb.so.1
>0x000000385c409fb0  0x000000385c40fec8  Yes         /lib64/libxcb-glx.so.0
>0x000000385c8018b0  0x000000385c8025c8  Yes         /lib64/libxcb-dri2.so.0
>0x000000384de09a00  0x000000384de150a8  Yes         /lib64/libxcb.so.1
>0x0000003859e00fa0  0x0000003859e03748  Yes         /lib64/libXxf86vm.so.1
>0x000000385b203210  0x000000385b208014  Yes         /lib64/libdrm.so.2
>0x0000003418006260  0x0000003418017e9c  Yes         /lib64/libselinux.so.1
>0x0000003852a02230  0x0000003852a0bf54  Yes         /lib64/libXi.so.6
>0x000000384da00ec0  0x000000384da01b3c  Yes         /lib64/libXau.so.6
>0x00000034184015f0  0x00000034184461f8  Yes         /lib64/libpcre.so.1
>0x00007f58fb1ac900  0x00007f58fb1af16c  Yes         /usr/lib64/python2.7/lib-dynload/_struct.so
>0x00007f58fafa51d0  0x00007f58fafa724c  Yes         /usr/lib64/python2.7/lib-dynload/binascii.so
>0x00007f58fad9fb80  0x00007f58fada0b2c  Yes         /usr/lib64/python2.7/lib-dynload/cStringIO.so
>0x00007f58fab8ea30  0x00007f58fab99b70  Yes         /usr/lib64/python2.7/lib-dynload/cPickle.so
>0x00007f58fa8c7910  0x00007f58fa8c8468  Yes         /usr/lib64/python2.7/lib-dynload/_hashlib.so
>0x00000030c6a18290  0x00000030c6a51820  Yes         /lib64/libssl.so.10
>0x00000030c6667e00  0x00000030c6754c48  Yes         /lib64/libcrypto.so.10
>0x0000003d26c0bbe0  0x0000003d26c3bcc4  Yes         /lib64/libgssapi_krb5.so.2
>0x0000003d25c24530  0x0000003d25c8541c  Yes         /lib64/libkrb5.so.3
>0x0000003853601510  0x00000038536020d4  Yes         /lib64/libcom_err.so.2
>0x0000003d26004750  0x0000003d26024678  Yes         /lib64/libk5crypto.so.3
>0x0000003d264035e0  0x0000003d26409f4c  Yes         /lib64/libkrb5support.so.0
>0x0000003855e015b0  0x0000003855e021ac  Yes         /lib64/libkeyutils.so.1
>0x000000384ee03a40  0x000000384ee1271c  Yes         /lib64/libresolv.so.2
>0x00007f58fa6c32a0  0x00007f58fa6c3ef8  Yes         /usr/lib64/python2.7/lib-dynload/_randommodule.so
>0x00007f58fa3fc5c0  0x00007f58fa3fe110  Yes         /usr/lib64/python2.7/lib-dynload/zlibmodule.so
>0x00007f58fa1dcd20  0x00007f58fa1ebc6c  Yes         /usr/lib64/python2.7/lib-dynload/_io.so
>0x00007f58f9fd1e60  0x00007f58f9fd2b74  Yes         /usr/lib64/python2.7/lib-dynload/fcntlmodule.so
>0x00007f58f95e6280  0x00007f58f9991e8c  Yes         /usr/lib64/dri/nouveau_dri.so
>0x000000384fa01870  0x000000384fa05f58  Yes         /lib64/libffi.so.6
>0x0000003851a03e00  0x0000003851a1cc1c  Yes         /lib64/libexpat.so.1
>0x00007f58f93838d0  0x00007f58f93862c0  Yes         /lib64/libdrm_nouveau.so.2
>0x000000380ee901a0  0x000000380fb4bf20  Yes         /usr/lib64/llvm/libLLVM-3.3.so
>0x00007f58f83edfe0  0x00007f58f83f350c  Yes         /usr/lib64/python2.7/lib-dynload/_tkinter.so
>0x00007f58f81ac2b0  0x00007f58f81d5740  Yes         /usr/lib64/tcl8.5/libTix.so
>0x00007f58f7e86600  0x00007f58f7f4d3ec  Yes         /lib64/libtk8.5.so
>0x00007f58f7b52ca0  0x00007f58f7c12868  Yes         /lib64/libtcl8.5.so
>0x000000385a6041e0  0x000000385a610f08  Yes         /lib64/libXft.so.2
>0x0000003852606ae0  0x000000385262313c  Yes         /lib64/libfontconfig.so.1
>0x0000003852e01b00  0x0000003852e077c8  Yes         /lib64/libXrender.so.1
>0x00007f58f71231e0  0x00007f58f712a3cc  Yes         /lib64/libnss_files.so.2
>0x00007f58f6f11150  0x00007f58f6f17ed8  Yes         /usr/lib64/python2.7/lib-dynload/_socketmodule.so
>0x00007f58f6d0a110  0x00007f58f6d0abac  Yes         /usr/lib64/python2.7/lib-dynload/_functoolsmodule.so
>0x00007f58f6b034d0  0x00007f58f6b06194  Yes         /usr/lib64/python2.7/lib-dynload/_ssl.so
>0x0000003854602ab0  0x00000038546074b0  Yes         /lib64/libXcursor.so.1
>0x00007f58f671dd40  0x00007f58f671f588  Yes         /usr/lib64/python2.7/lib-dynload/selectmodule.so
>$1 = 0x0
>No symbol "__glib_assert_msg" in current context.
>rax            0x0	0
>rbx            0x0	0
>rcx            0xffffffffffffffff	-1
>rdx            0x6	6
>rsi            0x1427	5159
>rdi            0x1427	5159
>rbp            0x2774cb8	0x2774cb8
>rsp            0x7fff042544a8	0x7fff042544a8
>r8             0x384b9bca20	241786669600
>r9             0x384eabeb70	241838058352
>r10            0x8	8
>r11            0x206	518
>r12            0x2759f20	41262880
>r13            0x2759d78	41262456
>r14            0x2758358	41255768
>r15            0x1	1
>rip            0x384b6359e9	0x384b6359e9 <__GI_raise+57>
>eflags         0x206	[ PF IF ]
>cs             0x33	51
>ss             0x2b	43
>ds             0x0	0
>es             0x0	0
>fs             0x0	0
>gs             0x0	0
>st0            *value not available*
>st1            *value not available*
>st2            *value not available*
>st3            *value not available*
>st4            *value not available*
>st5            *value not available*
>st6            *value not available*
>st7            *value not available*
>fctrl          *value not available*
>fstat          *value not available*
>ftag           *value not available*
>fiseg          *value not available*
>fioff          *value not available*
>foseg          *value not available*
>fooff          *value not available*
>fop            *value not available*
>mxcsr          *value not available*
>ymm0           *value not available*
>ymm1           *value not available*
>ymm2           *value not available*
>ymm3           *value not available*
>ymm4           *value not available*
>ymm5           *value not available*
>ymm6           *value not available*
>ymm7           *value not available*
>ymm8           *value not available*
>ymm9           *value not available*
>ymm10          *value not available*
>ymm11          *value not available*
>ymm12          *value not available*
>ymm13          *value not available*
>ymm14          *value not available*
>ymm15          *value not available*
>Dump of assembler code for function __GI_raise:
>   0x000000384b6359b0 <+0>:	mov    %fs:0x2d4,%eax
>   0x000000384b6359b8 <+8>:	mov    %eax,%ecx
>   0x000000384b6359ba <+10>:	mov    %fs:0x2d0,%esi
>   0x000000384b6359c2 <+18>:	test   %esi,%esi
>   0x000000384b6359c4 <+20>:	jne    0x384b6359f8 <__GI_raise+72>
>   0x000000384b6359c6 <+22>:	mov    $0xba,%eax
>   0x000000384b6359cb <+27>:	syscall 
>   0x000000384b6359cd <+29>:	mov    %eax,%ecx
>   0x000000384b6359cf <+31>:	mov    %eax,%fs:0x2d0
>   0x000000384b6359d7 <+39>:	mov    %eax,%esi
>   0x000000384b6359d9 <+41>:	movslq %edi,%rdx
>   0x000000384b6359dc <+44>:	movslq %esi,%rsi
>   0x000000384b6359df <+47>:	movslq %ecx,%rdi
>   0x000000384b6359e2 <+50>:	mov    $0xea,%eax
>   0x000000384b6359e7 <+55>:	syscall 
>=> 0x000000384b6359e9 <+57>:	cmp    $0xfffffffffffff000,%rax
>   0x000000384b6359ef <+63>:	ja     0x384b635a0a <__GI_raise+90>
>   0x000000384b6359f1 <+65>:	repz retq 
>   0x000000384b6359f3 <+67>:	nopl   0x0(%rax,%rax,1)
>   0x000000384b6359f8 <+72>:	test   %eax,%eax
>   0x000000384b6359fa <+74>:	jg     0x384b6359d9 <__GI_raise+41>
>   0x000000384b6359fc <+76>:	mov    %eax,%ecx
>   0x000000384b6359fe <+78>:	neg    %ecx
>   0x000000384b635a00 <+80>:	test   $0x7fffffff,%eax
>   0x000000384b635a05 <+85>:	cmove  %esi,%ecx
>   0x000000384b635a08 <+88>:	jmp    0x384b6359d9 <__GI_raise+41>
>   0x000000384b635a0a <+90>:	mov    0x38444f(%rip),%rdx        # 0x384b9b9e60
>   0x000000384b635a11 <+97>:	neg    %eax
>   0x000000384b635a13 <+99>:	mov    %eax,%fs:(%rdx)
>   0x000000384b635a16 <+102>:	or     $0xffffffffffffffff,%rax
>   0x000000384b635a1a <+106>:	retq   
>End of assembler dump.

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Attachments on bug 1098958: 897043 | 897044 | 897045 | 897046 | 897047 | 897048 | 897049 | 897050 | 897051