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Red Hat Bugzilla – Attachment 903333 Details for
Bug 1105911
BEDTools: FTBFS in rawhide
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build.log
<fdopen> (text/plain), 21.88 KB, created by
Dennis Gilmore
on 2014-06-09 02:04:19 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
Dennis Gilmore
Created:
2014-06-09 02:04:19 UTC
Size:
21.88 KB
patch
obsolete
>Mock Version: 1.1.39 >Mock Version: 1.1.39 >ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/BEDTools.spec'], False, '/var/lib/mock/f21-build-2108433-392781/root/', None, 86400, True, False, 1000, 425, None, False, {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n "<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}, logger=<mockbuild.trace_decorator.getLog object at 0x1588b90>) >Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/BEDTools.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n "<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} >warning: Could not canonicalize hostname: buildvm-03.phx2.fedoraproject.org >Building target platforms: i686 >Building for target i686 >Wrote: /builddir/build/SRPMS/BEDTools-2.19.1-3.fc21.src.rpm >Child return code was: 0 >LEAVE do --> > >ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/BEDTools.spec'], False, '/var/lib/mock/f21-build-2108433-392781/root/', None, 86400, True, False, 1000, 425, None, False, {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n "<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}, logger=<mockbuild.trace_decorator.getLog object at 0x1588b90>) >Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/BEDTools.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n "<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} >Building target platforms: i686 >Building for target i686 >Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DOfp0P >+ umask 022 >+ cd /builddir/build/BUILD >+ cd /builddir/build/BUILD >+ rm -rf bedtools2-2.19.1 >+ /usr/bin/gzip -dc /builddir/build/SOURCES/bedtools-2.19.1.tar.gz >+ /usr/bin/tar -xf - >+ STATUS=0 >+ '[' 0 -ne 0 ']' >+ cd bedtools2-2.19.1 >+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . >+ echo 'Patch #0 (bedtools-gzstream-path.patch):' >Patch #0 (bedtools-gzstream-path.patch): >+ /usr/bin/cat /builddir/build/SOURCES/bedtools-gzstream-path.patch >+ /usr/bin/patch -p1 -b --suffix .BEDTools.path --fuzz=0 >patching file src/utils/gzstream/Makefile >+ rm -rf src/utils/curl >+ cp -p /builddir/build/SOURCES/BEDTools-User-Manual.v4.pdf . >+ exit 0 >Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DNGypY >+ umask 022 >+ cd /builddir/build/BUILD >+ cd bedtools2-2.19.1 >+ make -j4 'CXXFLAGS=-I. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables' >Building BEDTools: >========================================================= > * Creating BamTools API >DETECTED_VERSION = v2.19.1 >CURRENT_VERSION = v2.19.0-15-g733c84b >Updating version file. >- Building in src/utils/bedFile >- Building in src/utils/BinTree >- Building in src/utils/version >- Building in src/utils/bedGraphFile > * compiling version.cpp > * compiling bedFile.cpp > * compiling BinTree.cpp > * compiling bedGraphFile.cpp >- Building in src/utils/chromsweep > * compiling chromsweep.cpp >- Building in src/utils/Contexts > * compiling ContextBase.cpp >- Building in src/utils/FileRecordTools >- Building in FileReaders > * compiling FileReader.cpp > * compiling SingleLineDelimTransferBuffer.cpp > * compiling SingleLineDelimTextFileReader.cpp > * compiling BamFileReader.cpp > * compiling ContextIntersect.cpp > * compiling BufferedStreamMgr.cpp > * compiling InputStreamMgr.cpp > * compiling ContextMap.cpp >- Building in Records > * compiling RecordMgr.cpp > * compiling ContextSample.cpp >- Building in src/utils/general > * compiling QuickString.cpp > * compiling Record.cpp > * compiling ParseTools.cpp >- Building in src/utils/gzstream >g++ -I. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c -o ../../../obj/gzstream.o gzstream.C -I. > * compiling Bed3Interval.cpp > * compiling PushBackStreamBuf.cpp >- Building in src/utils/fileType > * compiling fileType.cpp > * compiling Bed4Interval.cpp > * compiling CompressionTools.cpp > * compiling FileRecordTypeChecker.cpp >- Building in src/utils/bedFilePE > * compiling bedFilePE.cpp > * compiling BedGraphInterval.cpp > * compiling Bed5Interval.cpp > * compiling Bed6Interval.cpp > * compiling BedPlusInterval.cpp > * compiling Bed12Interval.cpp >- Building in src/utils/KeyListOps > * compiling KeyListOps.cpp > * compiling BamRecord.cpp > * compiling KeyListOpsMethods.cpp > * compiling VcfRecord.cpp > * compiling GffRecord.cpp >- Building in src/utils/NewChromsweep > * compiling NewChromsweep.cpp >- Building in src/utils/sequenceUtilities > * compiling sequenceUtils.cpp >- Building in src/utils/tabFile > * compiling tabFile.cpp >- Building in src/utils/BamTools > * compiling BamAlignment.cpp > * compiling RecordKeyList.cpp >- Building in src/utils/BamTools-Ancillary > * compiling BamAncillary.cpp > * compiling BlockMgr.cpp >- Building in src/utils/BlockedIntervals > * compiling BlockedIntervals.cpp > * compiling BamMultiReader.cpp > * compiling FileRecordMgr.cpp > * compiling BamReader.cpp >- Building in src/utils/Fasta > * compiling Fasta.cpp > * compiling BamWriter.cpp >Fasta.cpp: In member function 'void FastaIndexEntry::clear()': >Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null] > length = NULL; > ^ >Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null] > line_blen = NULL; > ^ >Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null] > line_len = NULL; > ^ >Fasta.cpp: In member function 'std::string FastaReference::getSequence(std::string)': >Fasta.cpp:283:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] > fread(seq, sizeof(char), seqlen, file); > ^ >Fasta.cpp: In member function 'std::string FastaReference::getSubSequence(std::string, int, int)': >Fasta.cpp:325:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] > fread(seq, sizeof(char), (off_t) seqlen, file); > ^ > * compiling SamHeader.cpp > * compiling BamAncillary.cpp >- Building in src/utils/VectorOps > * compiling VectorOps.cpp > * compiling SamProgram.cpp > * compiling SamProgramChain.cpp > * compiling SamReadGroup.cpp > * compiling SamReadGroupDictionary.cpp > * compiling split.cpp >- Building in src/utils/GenomeFile > * compiling GenomeFile.cpp > * compiling SamSequence.cpp >GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()': >GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable] > long c2; > ^ >- Building in src/utils/RecordOutputMgr > * compiling RecordOutputMgr.cpp >- Building in src/annotateBed > * compiling annotateMain.cpp > * compiling SamSequenceDictionary.cpp >annotateMain.cpp: In function 'int annotate_main(int, char**)': >annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable] > bool haveTitles = false; > ^ > * compiling NewGenomeFile.cpp > * compiling annotateBed.cpp >- Building in src/bamToBed > * compiling bamToBed.cpp > * compiling BamHeader_p.cpp >bamToBed.cpp: In function 'int bamtobed_main(int, char**)': >bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable] > bool useAlignmentScore = false; > ^ >- Building in src/bamToFastq > * compiling bamToFastqMain.cpp > * compiling BamMultiReader_p.cpp >bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)': >bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable] > bool haveFastq2 = false; > ^ > * compiling bamToFastq.cpp >- Building in src/bedToBam > * compiling bedToBam.cpp >bedToBam.cpp: In function 'int bedtobam_main(int, char**)': >bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable] > bool haveMapQual = false; > ^ >- Building in src/bedpeToBam > * compiling bedpeToBam.cpp >- Building in src/bedToIgv > * compiling bedToIgv.cpp >bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)': >bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable] > bool haveMapQual = false; > ^ >- Building in src/bed12ToBed6 > * compiling bed12ToBed6.cpp > * compiling BamRandomAccessController_p.cpp >- Building in src/closestBed > * compiling closestMain.cpp >- Building in src/clusterBed > * compiling clusterMain.cpp >- Building in src/complementBed > * compiling complementMain.cpp > * compiling BamReader_p.cpp > * compiling closestBed.cpp >clusterMain.cpp: In function 'int cluster_main(int, char**)': >clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable] > bool haveMaxDistance = false; > ^ > * compiling clusterBed.cpp > * compiling complementBed.cpp > * compiling BamWriter_p.cpp >- Building in src/coverageBed > * compiling coverageMain.cpp >- Building in src/expand > * compiling expand.cpp > * compiling BamIndexFactory_p.cpp > * compiling coverageBed.cpp >- Building in src/fastaFromBed > * compiling fastaFromBedMain.cpp > * compiling BamStandardIndex_p.cpp > * compiling fastaFromBed.cpp >- Building in src/flankBed > * compiling flankBedMain.cpp >- Building in src/genomeCoverageBed > * compiling genomeCoverageMain.cpp > * compiling flankBed.cpp >- Building in src/getOverlap > * compiling getOverlap.cpp >getOverlap.cpp: In function 'int getoverlap_main(int, char**)': >getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable] > bool haveColumns = false; > ^ > * compiling genomeCoverageBed.cpp >- Building in src/groupBy > * compiling groupBy.cpp > * compiling BamToolsIndex_p.cpp >- Building in src/intersectFile > * compiling intersectMain.cpp >groupBy.cpp: In function 'int groupby_main(int, char**)': >groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable] > bool haveOps = true; > ^ > * compiling intersectFile.cpp >- Building in src/jaccard > * compiling jaccardMain.cpp > * compiling BamDeviceFactory_p.cpp > * compiling BamFile_p.cpp >- Building in src/linksBed > * compiling linksMain.cpp > * compiling linksBed.cpp > * compiling jaccard.cpp > * compiling BamFtp_p.cpp >- Building in src/maskFastaFromBed > * compiling maskFastaFromBedMain.cpp > * compiling maskFastaFromBed.cpp >- Building in src/mapFile > * compiling mapMain.cpp >- Building in src/mergeBed > * compiling mergeMain.cpp >mergeMain.cpp: In function 'int merge_main(int, char**)': >mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable] > bool haveMaxDistance = false; > ^ > * compiling BamHttp_p.cpp > * compiling mapFile.cpp > * compiling mergeBed.cpp >- Building in src/multiBamCov > * compiling multiBamCovMain.cpp > * compiling BamPipe_p.cpp >multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)': >multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable] > bool haveBed = false; > ^ >multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable] > bool haveBams = false; > ^ >multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable] > bool haveFraction = false; > ^ > * compiling BgzfStream_p.cpp >- Building in src/multiIntersectBed > * compiling multiBamCov.cpp >- Building in src/nekSandbox1 > * compiling multiIntersectBedMain.cpp > * compiling nekSandboxMain.cpp >multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)': >multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable] > bool haveFiles = false; > ^ >multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable] > bool haveGenome = false; > ^ >multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable] > bool haveFiller = true; > ^ >- Building in src/nucBed > * compiling nucBedMain.cpp > * compiling multiIntersectBed.cpp > * compiling ByteArray_p.cpp > * compiling nucBed.cpp >- Building in src/pairToBed > * compiling pairToBedMain.cpp > * compiling HostAddress_p.cpp >pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)': >pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable] > bool haveFraction = false; > ^ >- Building in src/pairToPair > * compiling pairToPairMain.cpp >pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)': >pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable] > bool haveFraction = false; > ^ > * compiling HostInfo_p.cpp > * compiling pairToBed.cpp > * compiling pairToPair.cpp >pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)': >pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable] > bool found1 = false; > ^ >pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable] > bool found2 = false; > ^ >pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)': >pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable] > CHRPOS spanLength = 0; > ^ >pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)': >pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable] > int spanLength = 0; > ^ >- Building in src/randomBed > * compiling randomBedMain.cpp > * compiling HttpHeader_p.cpp > * compiling randomBed.cpp >- Building in src/regressTest >compiling RegressTest.cpp >RegressTest.cpp: In member function 'bool RegressTest::executeAndCompareCorrectness(const fileListType&)': >RegressTest.cpp:431:25: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] > system(diffCmd.c_str()); > ^ >RegressTest.cpp: In member function 'bool RegressTest::startMemoryProfile(bool)': >RegressTest.cpp:573:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] > fgets(sLine, 4192, fp); > ^ >RegressTest.cpp: In member function 'bool RegressTest::calcMemoryStats()': >RegressTest.cpp:622:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] > fgets(sLine, 4192, fp); > ^ > * compiling ILocalIODevice_p.cpp > * compiling RollingBuffer_p.cpp > * compiling TcpSocketEngine_p.cpp >- Building in src/reldist > * compiling reldistMain.cpp > * compiling TcpSocketEngine_unix_p.cpp > * compiling reldist.cpp > * compiling TcpSocket_p.cpp >compiling regressTestMain.cpp >- Building in src/sampleFile > * compiling sampleMain.cpp >- Building in src/shuffleBed >reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()': >reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] > (float) freqItr->second / (float) _tot_queries); > ^ >reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=] > * compiling shuffleBedMain.cpp > * compiling SampleFile.cpp > * compiling SamFormatParser_p.cpp > * compiling shuffleBed.cpp >- Building in src/slopBed > * compiling slopBedMain.cpp >- Building in src/sortBed > * compiling sortMain.cpp > * compiling SamFormatPrinter_p.cpp > * compiling sortBed.cpp > * compiling slopBed.cpp >- Building in src/subtractBed > * compiling subtractMain.cpp > * compiling SamHeaderValidator_p.cpp > * compiling subtractBed.cpp >- Building in src/tagBam > * compiling tagBamMain.cpp >tagBamMain.cpp: In function 'int tagbam_main(int, char**)': >tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable] > bool haveFraction = false; > ^ > * compiling BamException_p.cpp > * linking lib/libbamtools.a >ar cr lib/libbamtools.a src/api/BamAlignment.o src/api/BamMultiReader.o src/api/BamReader.o src/api/BamWriter.o src/api/SamHeader.o src/api/SamProgram.o src/api/SamProgramChain.o src/api/SamReadGroup.o src/api/SamReadGroupDictionary.o src/api/SamSequence.o src/api/SamSequenceDictionary.o src/api/internal/bam/BamHeader_p.o src/api/internal/bam/BamMultiReader_p.o src/api/internal/bam/BamRandomAccessController_p.o src/api/internal/bam/BamReader_p.o src/api/internal/bam/BamWriter_p.o src/api/internal/index/BamIndexFactory_p.o src/api/internal/index/BamStandardIndex_p.o src/api/internal/index/BamToolsIndex_p.o src/api/internal/io/BamDeviceFactory_p.o src/api/internal/io/BamFile_p.o src/api/internal/io/BamFtp_p.o src/api/internal/io/BamHttp_p.o src/api/internal/io/BamPipe_p.o src/api/internal/io/BgzfStream_p.o src/api/internal/io/ByteArray_p.o src/api/internal/io/HostAddress_p.o src/api/internal/io/HostInfo_p.o src/api/internal/io/HttpHeader_p.o src/api/internal/io/ILocalIODevice_p.o src/api/internal/io/RollingBuffer_p.o src/api/internal/io/TcpSocketEngine_p.o src/api/internal/io/TcpSocketEngine_unix_p.o src/api/internal/io/TcpSocket_p.o src/api/internal/sam/SamFormatParser_p.o src/api/internal/sam/SamFormatPrinter_p.o src/api/internal/sam/SamHeaderValidator_p.o src/api/internal/utils/BamException_p.o > * compiling tagBam.cpp >- Building in src/unionBedGraphs > * compiling unionBedGraphsMain.cpp >unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)': >unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable] > bool haveFiles = false; > ^ >unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable] > bool haveGenome = false; > ^ >unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable] > bool haveFiller = true; > ^ >ranlib lib/libbamtools.a > * compiling unionBedGraphs.cpp >- Building in src/windowBed > * compiling windowMain.cpp >- Building in src/windowMaker > * compiling windowMakerMain.cpp > * compiling windowBed.cpp > * compiling windowMaker.cpp >- Building main bedtools binary. >done. >- Creating executables for old CLI. >done. >+ exit 0 >Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.tarf3P >+ umask 022 >+ cd /builddir/build/BUILD >+ '[' /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386 '!=' / ']' >+ rm -rf /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386 >++ dirname /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386 >+ mkdir -p /builddir/build/BUILDROOT >+ mkdir /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386 >+ cd bedtools2-2.19.1 >+ rm -rf /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386 >+ mkdir -p /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/bin >+ install -m 0755 bin/annotateBed bin/bamToBed bin/bamToFastq bin/bed12ToBed6 bin/bedToBam bin/bedToIgv bin/bedpeToBam bin/bedtools bin/closestBed bin/clusterBed bin/complementBed bin/coverageBed bin/expandCols bin/fastaFromBed bin/flankBed bin/genomeCoverageBed bin/getOverlap bin/groupBy bin/intersectBed bin/linksBed bin/mapBed bin/maskFastaFromBed bin/mergeBed bin/multiBamCov bin/multiIntersectBed bin/nucBed bin/pairToBed bin/pairToPair bin/randomBed bin/shuffleBed bin/slopBed bin/sortBed bin/subtractBed bin/tagBam bin/unionBedGraphs bin/windowBed bin/windowMaker /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/bin >+ mkdir -p /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/share/BEDTools >+ cp -a genomes/ /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/share/BEDTools >+ cp -a data/ /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/share/BEDTools >+ find /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/share/BEDTools -type f -exec chmod 0644 '{}' ';' >+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/bedtools2-2.19.1 >extracting debug info from /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/bin/bedtools >/usr/lib/rpm/debugedit: canonicalization unexpectedly shrank by one character >error: Bad exit status from /var/tmp/rpm-tmp.tarf3P (%install) >RPM build errors: > Bad exit status from /var/tmp/rpm-tmp.tarf3P (%install) >Child return code was: 1 >EXCEPTION: Command failed. See logs for output. > # ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/BEDTools.spec'] >Traceback (most recent call last): > File "/usr/lib/python2.7/site-packages/mockbuild/trace_decorator.py", line 70, in trace > result = func(*args, **kw) > File "/usr/lib/python2.7/site-packages/mockbuild/util.py", line 376, in do > raise mockbuild.exception.Error, ("Command failed. See logs for output.\n # %s" % (command,), child.returncode) >Error: Command failed. See logs for output. > # ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/BEDTools.spec'] >LEAVE do --> EXCEPTION RAISED >
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903335