Attachment 903333 Details for Bug 1105911 – build.log

build.log

<fdopen> (text/plain), 21.88 KB, created by Dennis Gilmore on 2014-06-09 02:04:19 UTC

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Creator: Dennis Gilmore

Created: 2014-06-09 02:04:19 UTC

Size: 21.88 KB

patch

obsolete

>Mock Version: 1.1.39
>Mock Version: 1.1.39
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/BEDTools.spec'], False, '/var/lib/mock/f21-build-2108433-392781/root/', None, 86400, True, False, 1000, 425, None, False, {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n "<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}, logger=<mockbuild.trace_decorator.getLog object at 0x1588b90>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/BEDTools.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n "<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}
>warning: Could not canonicalize hostname: buildvm-03.phx2.fedoraproject.org
>Building target platforms: i686
>Building for target i686
>Wrote: /builddir/build/SRPMS/BEDTools-2.19.1-3.fc21.src.rpm
>Child return code was: 0
>LEAVE do --> 
>
>ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps  builddir/build/SPECS/BEDTools.spec'], False, '/var/lib/mock/f21-build-2108433-392781/root/', None, 86400, True, False, 1000, 425, None, False, {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n "<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}, logger=<mockbuild.trace_decorator.getLog object at 0x1588b90>)
>Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps  builddir/build/SPECS/BEDTools.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n "<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}
>Building target platforms: i686
>Building for target i686
>Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DOfp0P
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd /builddir/build/BUILD
>+ rm -rf bedtools2-2.19.1
>+ /usr/bin/gzip -dc /builddir/build/SOURCES/bedtools-2.19.1.tar.gz
>+ /usr/bin/tar -xf -
>+ STATUS=0
>+ '[' 0 -ne 0 ']'
>+ cd bedtools2-2.19.1
>+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
>+ echo 'Patch #0 (bedtools-gzstream-path.patch):'
>Patch #0 (bedtools-gzstream-path.patch):
>+ /usr/bin/cat /builddir/build/SOURCES/bedtools-gzstream-path.patch
>+ /usr/bin/patch -p1 -b --suffix .BEDTools.path --fuzz=0
>patching file src/utils/gzstream/Makefile
>+ rm -rf src/utils/curl
>+ cp -p /builddir/build/SOURCES/BEDTools-User-Manual.v4.pdf .
>+ exit 0
>Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DNGypY
>+ umask 022
>+ cd /builddir/build/BUILD
>+ cd bedtools2-2.19.1
>+ make -j4 'CXXFLAGS=-I. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables'
>Building BEDTools:
>=========================================================
> * Creating BamTools API
>DETECTED_VERSION = v2.19.1
>CURRENT_VERSION  = v2.19.0-15-g733c84b
>Updating version file.
>- Building in src/utils/bedFile
>- Building in src/utils/BinTree
>- Building in src/utils/version
>- Building in src/utils/bedGraphFile
>  * compiling version.cpp
>  * compiling bedFile.cpp
>  * compiling BinTree.cpp
>  * compiling bedGraphFile.cpp
>- Building in src/utils/chromsweep
>  * compiling chromsweep.cpp
>- Building in src/utils/Contexts
>  * compiling ContextBase.cpp
>- Building in src/utils/FileRecordTools
>- Building in FileReaders
>  * compiling FileReader.cpp
>  * compiling SingleLineDelimTransferBuffer.cpp
>  * compiling SingleLineDelimTextFileReader.cpp
>  * compiling BamFileReader.cpp
>  * compiling ContextIntersect.cpp
>  * compiling BufferedStreamMgr.cpp
>  * compiling InputStreamMgr.cpp
>  * compiling ContextMap.cpp
>- Building in Records
>  * compiling RecordMgr.cpp
>  * compiling ContextSample.cpp
>- Building in src/utils/general
>  * compiling QuickString.cpp
>  * compiling Record.cpp
>  * compiling ParseTools.cpp
>- Building in src/utils/gzstream
>g++ -I. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c -o ../../../obj/gzstream.o gzstream.C -I.
>  * compiling Bed3Interval.cpp
>  * compiling PushBackStreamBuf.cpp
>- Building in src/utils/fileType
>  * compiling fileType.cpp
>  * compiling Bed4Interval.cpp
>  * compiling CompressionTools.cpp
>  * compiling FileRecordTypeChecker.cpp
>- Building in src/utils/bedFilePE
>  * compiling bedFilePE.cpp
>  * compiling BedGraphInterval.cpp
>  * compiling Bed5Interval.cpp
>  * compiling Bed6Interval.cpp
>  * compiling BedPlusInterval.cpp
>  * compiling Bed12Interval.cpp
>- Building in src/utils/KeyListOps
>  * compiling KeyListOps.cpp
>  * compiling BamRecord.cpp
>  * compiling KeyListOpsMethods.cpp
>  * compiling VcfRecord.cpp
>  * compiling GffRecord.cpp
>- Building in src/utils/NewChromsweep
>  * compiling NewChromsweep.cpp
>- Building in src/utils/sequenceUtilities
>  * compiling sequenceUtils.cpp
>- Building in src/utils/tabFile
>  * compiling tabFile.cpp
>- Building in src/utils/BamTools
> * compiling BamAlignment.cpp
>  * compiling RecordKeyList.cpp
>- Building in src/utils/BamTools-Ancillary
>  * compiling BamAncillary.cpp
>  * compiling BlockMgr.cpp
>- Building in src/utils/BlockedIntervals
>  * compiling BlockedIntervals.cpp
> * compiling BamMultiReader.cpp
>  * compiling FileRecordMgr.cpp
> * compiling BamReader.cpp
>- Building in src/utils/Fasta
>  * compiling Fasta.cpp
> * compiling BamWriter.cpp
>Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
>Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
>     length = NULL;
>            ^
>Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
>     line_blen = NULL;
>               ^
>Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
>     line_len  = NULL;
>               ^
>Fasta.cpp: In member function 'std::string FastaReference::getSequence(std::string)':
>Fasta.cpp:283:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
>         fread(seq, sizeof(char), seqlen, file);
>                                               ^
>Fasta.cpp: In member function 'std::string FastaReference::getSubSequence(std::string, int, int)':
>Fasta.cpp:325:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
>         fread(seq, sizeof(char), (off_t) seqlen, file);
>                                                       ^
> * compiling SamHeader.cpp
>  * compiling BamAncillary.cpp
>- Building in src/utils/VectorOps
>  * compiling VectorOps.cpp
> * compiling SamProgram.cpp
> * compiling SamProgramChain.cpp
> * compiling SamReadGroup.cpp
> * compiling SamReadGroupDictionary.cpp
>  * compiling split.cpp
>- Building in src/utils/GenomeFile
>  * compiling GenomeFile.cpp
> * compiling SamSequence.cpp
>GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
>GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
>                     long c2;
>                          ^
>- Building in src/utils/RecordOutputMgr
>  * compiling RecordOutputMgr.cpp
>- Building in src/annotateBed
>  * compiling annotateMain.cpp
> * compiling SamSequenceDictionary.cpp
>annotateMain.cpp: In function 'int annotate_main(int, char**)':
>annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
>     bool haveTitles     = false;
>          ^
>  * compiling NewGenomeFile.cpp
>  * compiling annotateBed.cpp
>- Building in src/bamToBed
>  * compiling bamToBed.cpp
> * compiling BamHeader_p.cpp
>bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
>bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
>     bool useAlignmentScore = false;
>          ^
>- Building in src/bamToFastq
>  * compiling bamToFastqMain.cpp
> * compiling BamMultiReader_p.cpp
>bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
>bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
>     bool haveFastq2    = false;
>          ^
>  * compiling bamToFastq.cpp
>- Building in src/bedToBam
>  * compiling bedToBam.cpp
>bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
>bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
>     bool haveMapQual     = false;
>          ^
>- Building in src/bedpeToBam
>  * compiling bedpeToBam.cpp
>- Building in src/bedToIgv
>  * compiling bedToIgv.cpp
>bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
>bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
>     bool haveMapQual     = false;
>          ^
>- Building in src/bed12ToBed6
>  * compiling bed12ToBed6.cpp
> * compiling BamRandomAccessController_p.cpp
>- Building in src/closestBed
>  * compiling closestMain.cpp
>- Building in src/clusterBed
>  * compiling clusterMain.cpp
>- Building in src/complementBed
>  * compiling complementMain.cpp
> * compiling BamReader_p.cpp
>  * compiling closestBed.cpp
>clusterMain.cpp: In function 'int cluster_main(int, char**)':
>clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
>     bool haveMaxDistance = false;
>          ^
>  * compiling clusterBed.cpp
>  * compiling complementBed.cpp
> * compiling BamWriter_p.cpp
>- Building in src/coverageBed
>  * compiling coverageMain.cpp
>- Building in src/expand
>  * compiling expand.cpp
> * compiling BamIndexFactory_p.cpp
>  * compiling coverageBed.cpp
>- Building in src/fastaFromBed
>  * compiling fastaFromBedMain.cpp
> * compiling BamStandardIndex_p.cpp
>  * compiling fastaFromBed.cpp
>- Building in src/flankBed
>  * compiling flankBedMain.cpp
>- Building in src/genomeCoverageBed
>  * compiling genomeCoverageMain.cpp
>  * compiling flankBed.cpp
>- Building in src/getOverlap
>  * compiling getOverlap.cpp
>getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
>getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
>     bool haveColumns = false;
>          ^
>  * compiling genomeCoverageBed.cpp
>- Building in src/groupBy
>  * compiling groupBy.cpp
> * compiling BamToolsIndex_p.cpp
>- Building in src/intersectFile
>  * compiling intersectMain.cpp
>groupBy.cpp: In function 'int groupby_main(int, char**)':
>groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
>     bool haveOps           = true;
>          ^
>  * compiling intersectFile.cpp
>- Building in src/jaccard
>  * compiling jaccardMain.cpp
> * compiling BamDeviceFactory_p.cpp
> * compiling BamFile_p.cpp
>- Building in src/linksBed
>  * compiling linksMain.cpp
>  * compiling linksBed.cpp
>  * compiling jaccard.cpp
> * compiling BamFtp_p.cpp
>- Building in src/maskFastaFromBed
>  * compiling maskFastaFromBedMain.cpp
>  * compiling maskFastaFromBed.cpp
>- Building in src/mapFile
>  * compiling mapMain.cpp
>- Building in src/mergeBed
>  * compiling mergeMain.cpp
>mergeMain.cpp: In function 'int merge_main(int, char**)':
>mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
>     bool haveMaxDistance = false;
>          ^
> * compiling BamHttp_p.cpp
>  * compiling mapFile.cpp
>  * compiling mergeBed.cpp
>- Building in src/multiBamCov
>  * compiling multiBamCovMain.cpp
> * compiling BamPipe_p.cpp
>multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
>multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
>     bool haveBed           = false;
>          ^
>multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
>     bool haveBams          = false;
>          ^
>multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
>     bool haveFraction       = false;
>          ^
> * compiling BgzfStream_p.cpp
>- Building in src/multiIntersectBed
>  * compiling multiBamCov.cpp
>- Building in src/nekSandbox1
>  * compiling multiIntersectBedMain.cpp
>  * compiling nekSandboxMain.cpp
>multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
>multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
>     bool haveFiles         = false;
>          ^
>multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
>     bool haveGenome        = false;
>          ^
>multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
>     bool haveFiller        = true;
>          ^
>- Building in src/nucBed
>  * compiling nucBedMain.cpp
>  * compiling multiIntersectBed.cpp
> * compiling ByteArray_p.cpp
>  * compiling nucBed.cpp
>- Building in src/pairToBed
>  * compiling pairToBedMain.cpp
> * compiling HostAddress_p.cpp
>pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
>pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
>     bool haveFraction       = false;
>          ^
>- Building in src/pairToPair
>  * compiling pairToPairMain.cpp
>pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
>pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
>     bool haveFraction = false;
>          ^
> * compiling HostInfo_p.cpp
>  * compiling pairToBed.cpp
>  * compiling pairToPair.cpp
>pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
>pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
>         bool found1 = false;
>              ^
>pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
>         bool found2 = false;
>              ^
>pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
>pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
>     CHRPOS spanLength = 0;
>            ^
>pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
>pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
>     int spanLength = 0;
>         ^
>- Building in src/randomBed
>  * compiling randomBedMain.cpp
> * compiling HttpHeader_p.cpp
>  * compiling randomBed.cpp
>- Building in src/regressTest
>compiling RegressTest.cpp
>RegressTest.cpp: In member function 'bool RegressTest::executeAndCompareCorrectness(const fileListType&)':
>RegressTest.cpp:431:25: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
>  system(diffCmd.c_str());
>                         ^
>RegressTest.cpp: In member function 'bool RegressTest::startMemoryProfile(bool)':
>RegressTest.cpp:573:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
>  fgets(sLine, 4192, fp);
>                        ^
>RegressTest.cpp: In member function 'bool RegressTest::calcMemoryStats()':
>RegressTest.cpp:622:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
>   fgets(sLine, 4192, fp);
>                         ^
> * compiling ILocalIODevice_p.cpp
> * compiling RollingBuffer_p.cpp
> * compiling TcpSocketEngine_p.cpp
>- Building in src/reldist
>  * compiling reldistMain.cpp
> * compiling TcpSocketEngine_unix_p.cpp
>  * compiling reldist.cpp
> * compiling TcpSocket_p.cpp
>compiling regressTestMain.cpp
>- Building in src/sampleFile
>  * compiling sampleMain.cpp
>- Building in src/shuffleBed
>reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
>reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
>                (float) freqItr->second / (float) _tot_queries);
>                                                              ^
>reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
>  * compiling shuffleBedMain.cpp
>  * compiling SampleFile.cpp
> * compiling SamFormatParser_p.cpp
>  * compiling shuffleBed.cpp
>- Building in src/slopBed
>  * compiling slopBedMain.cpp
>- Building in src/sortBed
>  * compiling sortMain.cpp
> * compiling SamFormatPrinter_p.cpp
>  * compiling sortBed.cpp
>  * compiling slopBed.cpp
>- Building in src/subtractBed
>  * compiling subtractMain.cpp
> * compiling SamHeaderValidator_p.cpp
>  * compiling subtractBed.cpp
>- Building in src/tagBam
>  * compiling tagBamMain.cpp
>tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
>tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
>     bool haveFraction     = false;
>          ^
> * compiling BamException_p.cpp
> * linking lib/libbamtools.a
>ar cr lib/libbamtools.a src/api/BamAlignment.o src/api/BamMultiReader.o src/api/BamReader.o src/api/BamWriter.o src/api/SamHeader.o src/api/SamProgram.o src/api/SamProgramChain.o src/api/SamReadGroup.o src/api/SamReadGroupDictionary.o src/api/SamSequence.o src/api/SamSequenceDictionary.o src/api/internal/bam/BamHeader_p.o src/api/internal/bam/BamMultiReader_p.o src/api/internal/bam/BamRandomAccessController_p.o src/api/internal/bam/BamReader_p.o src/api/internal/bam/BamWriter_p.o src/api/internal/index/BamIndexFactory_p.o src/api/internal/index/BamStandardIndex_p.o src/api/internal/index/BamToolsIndex_p.o src/api/internal/io/BamDeviceFactory_p.o src/api/internal/io/BamFile_p.o src/api/internal/io/BamFtp_p.o src/api/internal/io/BamHttp_p.o src/api/internal/io/BamPipe_p.o src/api/internal/io/BgzfStream_p.o src/api/internal/io/ByteArray_p.o src/api/internal/io/HostAddress_p.o src/api/internal/io/HostInfo_p.o src/api/internal/io/HttpHeader_p.o src/api/internal/io/ILocalIODevice_p.o src/api/internal/io/RollingBuffer_p.o src/api/internal/io/TcpSocketEngine_p.o src/api/internal/io/TcpSocketEngine_unix_p.o src/api/internal/io/TcpSocket_p.o src/api/internal/sam/SamFormatParser_p.o src/api/internal/sam/SamFormatPrinter_p.o src/api/internal/sam/SamHeaderValidator_p.o src/api/internal/utils/BamException_p.o
>  * compiling tagBam.cpp
>- Building in src/unionBedGraphs
>  * compiling unionBedGraphsMain.cpp
>unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
>unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
>     bool haveFiles         = false;
>          ^
>unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
>     bool haveGenome        = false;
>          ^
>unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
>     bool haveFiller        = true;
>          ^
>ranlib lib/libbamtools.a
>  * compiling unionBedGraphs.cpp
>- Building in src/windowBed
>  * compiling windowMain.cpp
>- Building in src/windowMaker
>  * compiling windowMakerMain.cpp
>  * compiling windowBed.cpp
>  * compiling windowMaker.cpp
>- Building main bedtools binary.
>done.
>- Creating executables for old CLI.
>done.
>+ exit 0
>Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.tarf3P
>+ umask 022
>+ cd /builddir/build/BUILD
>+ '[' /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386 '!=' / ']'
>+ rm -rf /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386
>++ dirname /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386
>+ mkdir -p /builddir/build/BUILDROOT
>+ mkdir /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386
>+ cd bedtools2-2.19.1
>+ rm -rf /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386
>+ mkdir -p /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/bin
>+ install -m 0755 bin/annotateBed bin/bamToBed bin/bamToFastq bin/bed12ToBed6 bin/bedToBam bin/bedToIgv bin/bedpeToBam bin/bedtools bin/closestBed bin/clusterBed bin/complementBed bin/coverageBed bin/expandCols bin/fastaFromBed bin/flankBed bin/genomeCoverageBed bin/getOverlap bin/groupBy bin/intersectBed bin/linksBed bin/mapBed bin/maskFastaFromBed bin/mergeBed bin/multiBamCov bin/multiIntersectBed bin/nucBed bin/pairToBed bin/pairToPair bin/randomBed bin/shuffleBed bin/slopBed bin/sortBed bin/subtractBed bin/tagBam bin/unionBedGraphs bin/windowBed bin/windowMaker /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/bin
>+ mkdir -p /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/share/BEDTools
>+ cp -a genomes/ /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/share/BEDTools
>+ cp -a data/ /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/share/BEDTools
>+ find /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/share/BEDTools -type f -exec chmod 0644 '{}' ';'
>+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/bedtools2-2.19.1
>extracting debug info from /builddir/build/BUILDROOT/BEDTools-2.19.1-3.fc21.i386/usr/bin/bedtools
>/usr/lib/rpm/debugedit: canonicalization unexpectedly shrank by one character
>error: Bad exit status from /var/tmp/rpm-tmp.tarf3P (%install)
>RPM build errors:
>    Bad exit status from /var/tmp/rpm-tmp.tarf3P (%install)
>Child return code was: 1
>EXCEPTION: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps  builddir/build/SPECS/BEDTools.spec']
>Traceback (most recent call last):
>  File "/usr/lib/python2.7/site-packages/mockbuild/trace_decorator.py", line 70, in trace
>    result = func(*args, **kw)
>  File "/usr/lib/python2.7/site-packages/mockbuild/util.py", line 376, in do
>    raise mockbuild.exception.Error, ("Command failed. See logs for output.\n # %s" % (command,), child.returncode)
>Error: Command failed. See logs for output.
> # ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps  builddir/build/SPECS/BEDTools.spec']
>LEAVE do --> EXCEPTION RAISED
>

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Attachments on bug 1105911: 903333 | 903334 | 903335