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Red Hat Bugzilla – Attachment 909829 Details for
Bug 1105923
R-rtracklayer: FTBFS in rawhide
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[patch]
Patch for rawhide
0001-Update-no-zlibbioc-patch-add-missing-BR-1105923.patch (text/plain), 3.44 KB, created by
Yaakov Selkowitz
on 2014-06-18 03:55:16 UTC
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Description:
Patch for rawhide
Filename:
MIME Type:
Creator:
Yaakov Selkowitz
Created:
2014-06-18 03:55:16 UTC
Size:
3.44 KB
patch
obsolete
>From a03750f104b9339b227f0b81a65e1288fef13c1b Mon Sep 17 00:00:00 2001 >From: Yaakov Selkowitz <yselkowitz@users.sourceforge.net> >Date: Tue, 17 Jun 2014 22:20:01 -0500 >Subject: [PATCH] Update no-zlibbioc patch, add missing BR (#1105923) > >--- > R-rtracklayer-1.22.3-no-zlibbioc.patch | 21 +++++++++++++++++++++ > R-rtracklayer.spec | 9 +++++++-- > 2 files changed, 28 insertions(+), 2 deletions(-) > create mode 100644 R-rtracklayer-1.22.3-no-zlibbioc.patch > >diff --git a/R-rtracklayer-1.22.3-no-zlibbioc.patch b/R-rtracklayer-1.22.3-no-zlibbioc.patch >new file mode 100644 >index 0000000..be5dd2f >--- /dev/null >+++ b/R-rtracklayer-1.22.3-no-zlibbioc.patch >@@ -0,0 +1,21 @@ >+--- rtracklayer/rtracklayer/DESCRIPTION >++++ rtracklayer/rtracklayer/DESCRIPTION >+@@ -5,7 +5,7 @@ Author: Michael Lawrence, Vince Carey, Robert Gentleman >+ Depends: R (>= 2.10), methods, GenomicRanges (>= 1.13.3) >+ Imports: XML (>= 1.98-0), BiocGenerics (>= 0.7.7), IRanges (>= >+ 1.19.34), XVector (>= 0.1.3), GenomicRanges (>= 1.13.43), >+- Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), zlibbioc, RCurl >++ Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), RCurl >+ (>= 1.4-2), Rsamtools (>= 1.13.1) >+ Suggests: humanStemCell, microRNA (>= 1.1.1), genefilter, limma, >+ org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19, >+--- rtracklayer/rtracklayer/NAMESPACE >++++ rtracklayer/rtracklayer/NAMESPACE >+@@ -1,7 +1,5 @@ >+ useDynLib(rtracklayer, .registration = TRUE) >+ >+-import(zlibbioc) >+- >+ importFrom("stats", offset) >+ >+ importFrom(utils, count.fields) >diff --git a/R-rtracklayer.spec b/R-rtracklayer.spec >index 60d3d38..e4383f8 100644 >--- a/R-rtracklayer.spec >+++ b/R-rtracklayer.spec >@@ -2,20 +2,21 @@ > > Name: R-%{packname} > Version: 1.22.3 >-Release: 2%{?dist} >+Release: 3%{?dist} > Summary: R interface to genome browsers and their annotation tracks > Group: Applications/Productivity > License: Artistic 2.0 and BSD > URL: http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html > Source0: http://www.bioconductor.org/packages/2.9/bioc/src/contrib/%{packname}_%{version}.tar.gz > Source1: rtracklayer_jimkent_license.txt >-Patch0: R-rtracklayer-1.20.0-no-zlibbioc.patch >+Patch0: R-rtracklayer-1.22.3-no-zlibbioc.patch > Requires: R-core >= 3.0.0, texlive-latex, R-methods, R-RCurl >= 1.4.2, R-XML >= 1.98.0 > Requires: R-IRanges >= 1.19.34, R-GenomicRanges >= 1.13.43, R-Biostrings >= 2.29.18 > Requires: R-BSgenome >= 1.15.17, R-Rsamtools >= 1.13.1, R-XVector >= 0.1.3 > BuildRequires: R-devel >= 3.0.0, R-methods, R-RCurl >= 1.4.2, R-XML >= 1.98.0 > BuildRequires: R-IRanges-devel >= 1.19.34, R-GenomicRanges >= 1.13.43, R-Biostrings-devel >= 2.29.18 > BuildRequires: R-BSgenome >= 1.23.1, R-Rsamtools-devel >= 1.13.1, zlib-devel >+BuildRequires: R-XVector-devel >= 0.1.3 > > %description > Extensible framework for interacting with multiple genome browsers (currently >@@ -70,6 +71,10 @@ rm -rf %{buildroot}%{_libdir}/R/library/%{packname}/tests/quickload/T_species_Oc > %{_libdir}/R/library/%{packname}/unitTests/ > > %changelog >+* Tue Jun 17 2014 Yaakov Selkowitz <yselkowi@redhat.com> - 1.22.3-3 >+- Update no-zlibbioc patch for 1.22.3 (#1105923) >+- Add missing BR >+ > * Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.3-2 > - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild > >-- >1.9.3 >
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Attachments on
bug 1105923
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903369
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903370
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903371
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