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Red Hat Bugzilla – Attachment 921906 Details for
Bug 1123988
Unable to install scipy requirement in Python 2.7 cartridge
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GIt push output
scipy.txt (text/plain), 22.36 KB, created by
Dawid Drechny
on 2014-07-28 19:13:23 UTC
(
hide
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Description:
GIt push output
Filename:
MIME Type:
Creator:
Dawid Drechny
Created:
2014-07-28 19:13:23 UTC
Size:
22.36 KB
patch
obsolete
>$ git push >Counting objects: 3, done. >Delta compression using up to 2 threads. >Compressing objects: 100% (3/3), done. >Writing objects: 100% (3/3), 304 bytes | 0 bytes/s, done. >Total 3 (delta 2), reused 0 (delta 0) >remote: Stopping Python 2.7 cartridge >remote: Waiting for stop to finish >remote: Waiting for stop to finish >remote: Waiting for stop to finish >remote: Building git ref 'master', commit 8570b1d >remote: Activating virtenv >remote: Checking for pip dependency listed in requirements.txt file.. >remote: You must give at least one requirement to install (see "pip help install") >remote: Running setup.py script.. >remote: running develop >remote: running egg_info >remote: creating YourAppName.egg-info >remote: writing requirements to YourAppName.egg-info/requires.txt >remote: writing YourAppName.egg-info/PKG-INFO >remote: writing top-level names to YourAppName.egg-info/top_level.txt >remote: writing dependency_links to YourAppName.egg-info/dependency_links.txt >remote: writing manifest file 'YourAppName.egg-info/SOURCES.txt' >remote: reading manifest file 'YourAppName.egg-info/SOURCES.txt' >remote: writing manifest file 'YourAppName.egg-info/SOURCES.txt' >remote: running build_ext >remote: Creating /var/lib/openshift/53d69e5e4382ec1ab90003bf/app-root/runtime/dependencies/python/virtenv/lib/python2.7/site-packages/YourAppName.egg-link (link to .) >remote: Adding YourAppName 1.0 to easy-install.pth file >remote: >remote: Installed /var/lib/openshift/53d69e5e4382ec1ab90003bf/app-root/runtime/repo >remote: Processing dependencies for YourAppName==1.0 >remote: Searching for scipy >remote: Reading http://mirror1.ops.rhcloud.com/mirror/python/web/simple/scipy/ >remote: Best match: scipy 0.14.0 >remote: Downloading http://mirror1.ops.rhcloud.com/mirror/python/web/packages/source/s/scipy/scipy-0.14.0.zip#md5=7ee4fa9e756bab6b46b79f77c821cb68 >remote: Processing scipy-0.14.0.zip >remote: Writing /tmp/easy_install-M9Ha6A/scipy-0.14.0/setup.cfg >remote: Running scipy-0.14.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-M9Ha6A/scipy-0.14.0/egg-dist-tmp-T9T2Ac >remote: Warning: distutils distribution has been initialized, it may be too late to add an extension _vqWarning: distutils distribution has been initialized, it may be too late to add an extension _hierarchy_wrapWarning: distutils distribution has been initialized, it may be too late to add a subpackage clusterWarning: distutils distribution has been initialized, it may be too late to add a subpackage constantsWarning: distutils distribution has been initialized, it may be too late to add a library dfftpackWarning: distutils distribution has been initialized, it may be too late to add a library fftpackWarning: distutils distribution has been initialized, it may be too late to add an extension _fftpackWarning: distutils distribution has been initialized, it may be too late to add an extension convolveWarning: distutils distribution has been initialized, it may be too late to add a subpackage fftpackFound executable /usr/bin/gfortran >remote: ATLAS version 3.8.4 built by mockbuild on Thu Feb 9 08:22:21 EST 2012: >remote: UNAME : Linux x86-010.build.bos.redhat.com 2.6.18-274.17.1.el5 #1 SMP Wed Jan 4 22:45:44 EST 2012 x86_64 x86_64 x86_64 GNU/Linux >remote: INSTFLG : -1 0 -a 1 >remote: ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_P4E -DATL_CPUMHZ=3600 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 >remote: F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle >remote: CACHEEDGE: 524288 >remote: F77 : gfortran, version GNU Fortran (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) >remote: F77FLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -g -Wa,--noexecstack -fPIC -m64 >remote: SMC : gcc, version gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) >remote: SMCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -g -Wa,--noexecstack -fPIC -m64 >remote: SKC : gcc, version gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) >remote: SKCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -g -Wa,--noexecstack -fPIC -m64 >remote: Warning: distutils distribution has been initialized, it may be too late to add a library linpack_liteWarning: distutils distribution has been initialized, it may be too late to add a library machWarning: distutils distribution has been initialized, it may be too late to add a library quadpackWarning: distutils distribution has been initialized, it may be too late to add a library odepackWarning: distutils distribution has been initialized, it may be too late to add a library dopWarning: distutils distribution has been initialized, it may be too late to add an extension _quadpackWarning: distutils distribution has been initialized, it may be too late to add an extension _odepackWarning: distutils distribution has been initialized, it may be too late to add an extension vodeWarning: distutils distribution has been initialized, it may be too late to add an extension lsodaWarning: distutils distribution has been initialized, it may be too late to add an extension _dopWarning: distutils distribution has been initialized, it may be too late to add a subpackage integrateWarning: distutils distribution has been initialized, it may be too late to add a library fitpackWarning: distutils distribution has been initialized, it may be too late to add an extension interpndWarning: distutils distribution has been initialized, it may be too late to add an extension _ppolyWarning: distutils distribution has been initialized, it may be too late to add an extension _fitpackWarning: distutils distribution has been initialized, it may be too late to add an extension dfitpackWarning: distutils distribution has been initialized, it may be too late to add an extension _interpolateWarning: distutils distribution has been initialized, it may be too late to add a subpackage interpolateWarning: distutils distribution has been initialized, it may be too late to add an extension streamsWarning: distutils distribution has been initialized, it may be too late to add an extension mio_utilsWarning: distutils distribution has been initialized, it may be too late to add an extension mio5_utilsWarning: distutils distribution has been initialized, it may be too late to add a subpackage matlabWarning: distutils distribution has been initialized, it may be too late to add a subpackage arffWarning: distutils distribution has been initialized, it may be too late to add a subpackage harwell_boeingWarning: distutils distribution has been initialized, it may be too late to add a subpackage ioRunning from scipy source directory. >remote: Warning: distutils distribution has been initialized, it may be too late to add an extension fblasWarning: distutils distribution has been initialized, it may be too late to add an extension cblasWarning: distutils distribution has been initialized, it may be too late to add a subpackage blasWarning: distutils distribution has been initialized, it may be too late to add an extension flapackWarning: distutils distribution has been initialized, it may be too late to add an extension clapackWarning: distutils distribution has been initialized, it may be too late to add an extension calc_lworkWarning: distutils distribution has been initialized, it may be too late to add a subpackage lapackWarning: distutils distribution has been initialized, it may be too late to add a subpackage libWarning: distutils distribution has been initialized, it may be too late to add an extension _fblasWarning: distutils distribution has been initialized, it may be too late to add an extension _flapackWarning: distutils distribution has been initialized, it may be too late to add an extension _cblasWarning: distutils distribution has been initialized, it may be too late to add an extension _clapackWarning: distutils distribution has been initialized, it may be too late to add an extension _flinalgWarning: distutils distribution has been initialized, it may be too late to add an extension calc_lworkWarning: distutils distribution has been initialized, it may be too late to add an extension _interpolativeWarning: distutils distribution has been initialized, it may be too late to add a subpackage linalgWarning: distutils distribution has been initialized, it may be too late to add a subpackage miscWarning: distutils distribution has been initialized, it may be too late to add a library odrpackWarning: distutils distribution has been initialized, it may be too late to add an extension __odrpackWarning: distutils distribution has been initialized, it may be too late to add a subpackage odrWarning: distutils distribution has been initialized, it may be too late to add a library minpackWarning: distutils distribution has been initialized, it may be too late to add an extension _minpackWarning: distutils distribution has been initialized, it may be too late to add a library rootfindWarning: distutils distribution has been initialized, it may be too late to add an extension _zerosWarning: distutils distribution has been initialized, it may be too late to add an extension _lbfgsbWarning: distutils distribution has been initialized, it may be too late to add an extension moduleTNCWarning: distutils distribution has been initialized, it may be too late to add an extension _cobylaWarning: distutils distribution has been initialized, it may be too late to add an extension minpack2Warning: distutils distribution has been initialized, it may be too late to add an extension _slsqpWarning: distutils distribution has been initialized, it may be too late to add an extension _nnlsWarning: distutils distribution has been initialized, it may be too late to add a subpackage optimizeWarning: distutils distribution has been initialized, it may be too late to add an extension sigtoolsWarning: distutils distribution has been initialized, it may be too late to add an extension _spectralWarning: distutils distribution has been initialized, it may be too late to add an extension splineWarning: distutils distribution has been initialized, it may be too late to add a subpackage signalWarning: distutils distribution has been initialized, it may be too late to add an extension _iterativeWarning: distutils distribution has been initialized, it may be too late to add a subpackage isolveWarning: distutils distribution has been initialized, it may be too late to add a library superlu_srcWarning: distutils distribution has been initialized, it may be too late to add an extension _superluWarning: distutils distribution has been initialized, it may be too late to add a subpackage dsolveWarning: distutils distribution has been initialized, it may be too late to add a library arpack_scipyWarning: distutils distribution has been initialized, it may be too late to add an extension _arpackWarning: distutils distribution has been initialized, it may be too late to add a subpackage arpackWarning: distutils distribution has been initialized, it may be too late to add a subpackage lobpcgWarning: distutils distribution has been initialized, it may be too late to add a subpackage eigenWarning: distutils distribution has been initialized, it may be too late to add a subpackage linalgWarning: distutils distribution has been initialized, it may be too late to add an extension _shortest_pathWarning: distutils distribution has been initialized, it may be too late to add an extension _traversalWarning: distutils distribution has been initialized, it may be too late to add an extension _min_spanning_treeWarning: distutils distribution has been initialized, it may be too late to add an extension _toolsWarning: distutils distribution has been initialized, it may be too late to add a subpackage csgraphWarning: distutils distribution has been initialized, it may be too late to add an extension _csparsetoolsWarning: distutils distribution has been initialized, it may be too late to add an extension _sparsetoolsWarning: distutils distribution has been initialized, it may be too late to add a subpackage sparseWarning: distutils distribution has been initialized, it may be too late to add an extension qhullWarning: distutils distribution has been initialized, it may be too late to add an extension ckdtreeWarning: distutils distribution has been initialized, it may be too late to add an extension _distance_wrapWarning: distutils distribution has been initialized, it may be too late to add a subpackage spatialWarning: distutils distribution has been initialized, it may be too late to add a library sc_c_miscWarning: distutils distribution has been initialized, it may be too late to add a library sc_cephesWarning: distutils distribution has been initialized, it may be too late to add a library sc_machWarning: distutils distribution has been initialized, it may be too late to add a library sc_amosWarning: distutils distribution has been initialized, it may be too late to add a library sc_cdfWarning: distutils distribution has been initialized, it may be too late to add a library sc_specfunWarning: distutils distribution has been initialized, it may be too late to add an extension specfunWarning: distutils distribution has been initialized, it may be too late to add an extension _ufuncsWarning: distutils distribution has been initialized, it may be too late to add an extension _ufuncs_cxxWarning: distutils distribution has been initialized, it may be too late to add a subpackage specialWarning: distutils distribution has been initialized, it may be too late to add a library statlibWarning: distutils distribution has been initialized, it may be too late to add an extension statlibWarning: distutils distribution has been initialized, it may be too late to add an extension vonmises_cythonWarning: distutils distribution has been initialized, it may be too late to add an extension _rankWarning: distutils distribution has been initialized, it may be too late to add an extension futilWarning: distutils distribution has been initialized, it may be too late to add an extension mvnWarning: distutils distribution has been initialized, it may be too late to add a subpackage statsWarning: distutils distribution has been initialized, it may be too late to add an extension _nd_imageWarning: distutils distribution has been initialized, it may be too late to add an extension _ni_labelWarning: distutils distribution has been initialized, it may be too late to add a subpackage ndimageWarning: distutils distribution has been initialized, it may be too late to add a subpackage weaveWarning: distutils distribution has been initialized, it may be too late to add a subpackage _build_utilsWarning: distutils distribution has been initialized, it may be too late to add a subpackage scipyATLAS version: 3.8.4 >remote: ATLAS version: 3.8.4 >remote: ATLAS version: 3.8.4 >remote: Splitting linalg.interpolative Fortran source files >remote: non-existing path in 'scipy/sparse': 'sparsetools/sparsetools_impl.h' >remote: non-existing path in 'scipy/sparse': 'sparsetools/bsr_impl.h' >remote: non-existing path in 'scipy/sparse': 'sparsetools/csc_impl.h' >remote: non-existing path in 'scipy/sparse': 'sparsetools/csr_impl.h' >remote: non-existing path in 'scipy/sparse': 'sparsetools/other_impl.h' >remote: Traceback (most recent call last): >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/app-root/runtime/repo//setup.py", line 9, in <module> >remote: install_requires=['scipy'], >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/core.py", line 152, in setup >remote: dist.run_commands() >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/dist.py", line 953, in run_commands >remote: self.run_command(cmd) >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command >remote: cmd_obj.run() >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/command/develop.py", line 27, in run >remote: self.install_for_development() >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/command/develop.py", line 129, in install_for_development >remote: self.process_distribution(None, self.dist, not self.no_deps) >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 706, in process_distribution >remote: [requirement], self.local_index, self.easy_install >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/pkg_resources.py", line 618, in resolve >remote: dist = best[req.key] = env.best_match(req, self, installer) >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/pkg_resources.py", line 862, in best_match >remote: return self.obtain(req, installer) # try and download/install >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/pkg_resources.py", line 874, in obtain >remote: return installer(requirement) >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 623, in easy_install >remote: return self.install_item(spec, dist.location, tmpdir, deps) >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 653, in install_item >remote: dists = self.install_eggs(spec, download, tmpdir) >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 849, in install_eggs >remote: return self.build_and_install(setup_script, setup_base) >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1130, in build_and_install >remote: self.run_setup(setup_script, setup_base, args) >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1115, in run_setup >remote: run_setup(setup_script, args) >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/sandbox.py", line 69, in run_setup >remote: lambda: execfile( >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/sandbox.py", line 120, in run >remote: return func() >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/sandbox.py", line 71, in <lambda> >remote: {'__file__':setup_script, '__name__':'__main__'} >remote: File "setup.py", line 237, in <module> >remote: >remote: File "setup.py", line 234, in setup_package >remote: >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/site-packages/numpy/distutils/core.py", line 186, in setup >remote: return old_setup(**new_attr) >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/core.py", line 152, in setup >remote: dist.run_commands() >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/dist.py", line 953, in run_commands >remote: self.run_command(cmd) >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command >remote: cmd_obj.run() >remote: File "/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/lib/python2.7/site-packages/setuptools/command/bdist_egg.py", line 177, in run >remote: self.run_command("egg_info") >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/cmd.py", line 326, in run_command >remote: self.distribution.run_command(command) >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command >remote: cmd_obj.run() >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/site-packages/numpy/distutils/command/egg_info.py", line 8, in run >remote: self.run_command("build_src") >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/cmd.py", line 326, in run_command >remote: self.distribution.run_command(command) >from setuptools import setup >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command >Dummy >remote: cmd_obj.run() >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/site-packages/numpy/distutils/command/build_src.py", line 152, in run >remote: self.build_sources() >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/site-packages/numpy/distutils/command/build_src.py", line 169, in build_sources >remote: self.build_extension_sources(ext) >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/site-packages/numpy/distutils/command/build_src.py", line 334, in build_extension_sources >remote: sources = self.f2py_sources(sources, ext) >remote: File "/opt/rh/python27/root/usr/lib64/python2.7/site-packages/numpy/distutils/command/build_src.py", line 571, in f2py_sources >remote: import numpy.f2py >remote: ImportError: No module named f2py >remote: /opt/rh/python27/root/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py:252: RuntimeWarning: Parent module 'numpy.distutils' not found while handling absolute import >remote: from numpy.distutils import log >remote: Script /var/lib/openshift/53d69e5e4382ec1ab90003bf/python//virtenv/bin/activate.fish cannot be made relative (it's not a normal script that starts with #!/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/bin/python) >remote: Script /var/lib/openshift/53d69e5e4382ec1ab90003bf/python//virtenv/bin/activate.csh cannot be made relative (it's not a normal script that starts with #!/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/bin/python) >remote: Preparing build for deployment >remote: Deployment id is 289ed3ed >remote: Activating deployment >remote: Script /var/lib/openshift/53d69e5e4382ec1ab90003bf/python//virtenv/bin/activate.fish cannot be made relative (it's not a normal script that starts with #!/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/bin/python) >remote: Script /var/lib/openshift/53d69e5e4382ec1ab90003bf/python//virtenv/bin/activate.csh cannot be made relative (it's not a normal script that starts with #!/var/lib/openshift/53d69e5e4382ec1ab90003bf/python/virtenv/bin/python) >remote: Starting Python 2.7 cartridge (Apache+mod_wsgi) >remote: Application directory "/" selected as DocumentRoot >remote: Application "wsgi.py" selected as default WSGI entry point >remote: ------------------------- >remote: Git Post-Receive Result: success >remote: Activation status: success >remote: Deployment completed with status: success >To ssh://53d69e5e4382ec1ab90003bf@test-7b.rhcloud.com/~/git/test.git/ > 90266fc..8570b1d master -> master
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bug 1123988
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921907