Bug 1011264

Summary: please update to bwa 0.7.5a
Product: [Fedora] Fedora Reporter: Alex Lancaster <alex>
Component: bwaAssignee: Adam Huffman <bloch>
Status: CLOSED ERRATA QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: rawhideCC: bloch
Target Milestone: ---   
Target Release: ---   
Hardware: Unspecified   
OS: Unspecified   
Whiteboard:
Fixed In Version: bwa-0.7.5a-2.fc20 Doc Type: Bug Fix
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2013-11-06 07:36:51 UTC Type: Bug
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:

Description Alex Lancaster 2013-09-24 00:01:57 UTC
0.6.x is getting a bit long in the tooth and does not have the "bwa mem" feature, please update to the latest:

http://sourceforge.net/projects/bio-bwa/

Comment 1 Adam Huffman 2013-10-04 16:31:27 UTC
I hope to look at updating it this weekend. Thanks for the notification.

Comment 2 Fedora Update System 2013-10-27 23:04:55 UTC
bwa-0.7.5a-2.fc20 has been submitted as an update for Fedora 20.
https://admin.fedoraproject.org/updates/bwa-0.7.5a-2.fc20

Comment 3 Fedora Update System 2013-10-27 23:10:57 UTC
bwa-0.7.5a-2.fc19 has been submitted as an update for Fedora 19.
https://admin.fedoraproject.org/updates/bwa-0.7.5a-2.fc19

Comment 4 Adam Huffman 2013-10-28 07:54:28 UTC
As noted in the update, 0.7.x requires SSE2, so it won't be available for other architectures. Please test this new build.

Also, this makes updating the EPEL branches rather problematic. Are you using those?

Comment 5 Fedora Update System 2013-10-28 19:21:09 UTC
Package bwa-0.7.5a-2.fc20:
* should fix your issue,
* was pushed to the Fedora 20 testing repository,
* should be available at your local mirror within two days.
Update it with:
# su -c 'yum update --enablerepo=updates-testing bwa-0.7.5a-2.fc20'
as soon as you are able to.
Please go to the following url:
https://admin.fedoraproject.org/updates/FEDORA-2013-20142/bwa-0.7.5a-2.fc20
then log in and leave karma (feedback).

Comment 6 Fedora Update System 2013-11-06 07:36:51 UTC
bwa-0.7.5a-2.fc19 has been pushed to the Fedora 19 stable repository.  If problems still persist, please make note of it in this bug report.

Comment 7 Fedora Update System 2013-11-10 06:47:56 UTC
bwa-0.7.5a-2.fc20 has been pushed to the Fedora 20 stable repository.  If problems still persist, please make note of it in this bug report.