Bug 1094513

Summary: openbabel testsuite is failing on ppc64, ppc64le, aarch64
Product: [Fedora] Fedora EPEL Reporter: Dominik 'Rathann' Mierzejewski <dominik>
Component: openbabelAssignee: Dominik 'Rathann' Mierzejewski <dominik>
Status: CLOSED ERRATA QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: epel7CC: dominik, mjuszkie, normand
Target Milestone: ---   
Target Release: ---   
Hardware: ppc64   
OS: Linux   
Fixed In Version: openbabel-2.3.2-11.fc21 Doc Type: Bug Fix
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2015-02-23 08:03:34 UTC Type: Bug
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Bug Depends On:    
Bug Blocks: 1071880, 1051573    
Description Flags
ppc64 build.log from https://koji.fedoraproject.org/koji/taskinfo?taskID=6803057 none

Description Dominik 'Rathann' Mierzejewski 2014-05-05 21:27:20 UTC
Created attachment 892707 [details]
ppc64 build.log from https://koji.fedoraproject.org/koji/taskinfo?taskID=6803057

Description of problem:
Three tests from the openbabel testsuite are failing on the ppc64 builders:

The following tests FAILED:
	 10 - rotor_Test (Failed)
	 23 - inchiSteffen_PubChem.smi_Test (Timeout)
	 54 - pytest_sym (Timeout)

Version-Release number of selected component (if applicable):

How reproducible:

Steps to Reproduce:
1. Try building git://pkgs.fedoraproject.org/openbabel?#07c567d5b32a1e4166b0a95863ceffdf5df001b3

Actual results:
Three tests fail.

Expected results:
%check should complete successfully on ppc64 as well.

Additional info:
Full koji build log from ppc64 builder attached.

Comment 1 Marcin Juszkiewicz 2014-05-13 12:31:13 UTC
Same ones fail on AArch64.

Comment 2 Marcin Juszkiewicz 2014-05-15 20:04:08 UTC
I suspect OBRotor::CalcTorsion() function or data it uses.

Basically this part:

    if ((v2x*c3x + v2y*c3y + v2z*c3z) > 0.0)
      ang = -acos(costheta);
      ang = acos(costheta);

As on AArch64 (and probably PPC64 as well) "if" case is true in second part of test so it fails.

Comment 3 Fedora Update System 2015-02-05 08:44:21 UTC
openbabel-2.3.2-11.fc21 has been submitted as an update for Fedora 21.

Comment 4 Fedora Update System 2015-02-06 04:00:57 UTC
Package openbabel-2.3.2-11.fc21:
* should fix your issue,
* was pushed to the Fedora 21 testing repository,
* should be available at your local mirror within two days.
Update it with:
# su -c 'yum update --enablerepo=updates-testing openbabel-2.3.2-11.fc21'
as soon as you are able to.
Please go to the following url:
then log in and leave karma (feedback).

Comment 5 Fedora Update System 2015-02-23 08:03:34 UTC
openbabel-2.3.2-11.fc21 has been pushed to the Fedora 21 stable repository.  If problems still persist, please make note of it in this bug report.