Bug 1113404
Summary: | -flto breaks debuginfo | ||
---|---|---|---|
Product: | [Fedora] Fedora | Reporter: | Mattias Ellert <mattias.ellert> |
Component: | R | Assignee: | Tom "spot" Callaway <tcallawa> |
Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
Severity: | unspecified | Docs Contact: | |
Priority: | unspecified | ||
Version: | rawhide | CC: | michel, tcallawa, ville.skytta |
Target Milestone: | --- | ||
Target Release: | --- | ||
Hardware: | Unspecified | ||
OS: | Unspecified | ||
Whiteboard: | |||
Fixed In Version: | rkward-0.6.1-9.fc20 | Doc Type: | Bug Fix |
Doc Text: | Story Points: | --- | |
Clone Of: | Environment: | ||
Last Closed: | 2014-09-06 20:30:24 UTC | Type: | Bug |
Regression: | --- | Mount Type: | --- |
Documentation: | --- | CRM: | |
Verified Versions: | Category: | --- | |
oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
Cloudforms Team: | --- | Target Upstream Version: | |
Embargoed: | |||
Bug Depends On: | |||
Bug Blocks: | 1101935 |
Description
Mattias Ellert
2014-06-26 06:52:03 UTC
Sorry about the empty submission - it was not intentional. Description of problem: I got a report (bug #1101935) broken debuginfo package for an R addon package. I tracked this down to the module having been compiled using the -flto compiler flag and submitted a bug report (bug #1113368) to gcc about that -flto caused broken debuginfo packages. The reply form the maintainer of gcc was: "If you want usable debug info, you can't use -flto, at least for the past few years and likely next few years too." The -flto flag when compiling R modules is picked up from the /usr/lib64/R/etc/Makeconf file installed by R-core. Would it make sense not to use the -flto flag given the above statement? Version-Release number of selected component (if applicable): R-core-3.1.0-9.fc21.x86_64 How reproducible: Always on F21. Steps to Reproduce: 1. Compile the R-qtl package Actual results: Debuginfo package without sources Expected results: Debuginfo package with sources Additional info: See bug #1101935 and bug #1113368 Affected packages at the moment seem to include at least R-GeneR, R-ROC, R-Rsamtools, R-caTools and R-qtl. rkward-0.6.1-9.fc20,rpy-2.3.10-2.fc20,R-3.1.1-1.fc20,R-qtl-1.32.10-4.fc20 has been submitted as an update for Fedora 20. https://admin.fedoraproject.org/updates/rkward-0.6.1-9.fc20,rpy-2.3.10-2.fc20,R-3.1.1-1.fc20,R-qtl-1.32.10-4.fc20 rkward-0.6.1-9.fc19,rpy-2.3.10-2.fc19,R-3.1.1-1.fc19,R-qtl-1.32.10-4.fc19 has been submitted as an update for Fedora 19. https://admin.fedoraproject.org/updates/rkward-0.6.1-9.fc19,rpy-2.3.10-2.fc19,R-3.1.1-1.fc19,R-qtl-1.32.10-4.fc19 R-3.1.1-1.el5,R-qtl-1.32.10-4.el5 has been submitted as an update for Fedora EPEL 5. https://admin.fedoraproject.org/updates/R-3.1.1-1.el5,R-qtl-1.32.10-4.el5 R-3.1.1-1.el6,R-qtl-1.32.10-4.el6 has been submitted as an update for Fedora EPEL 6. https://admin.fedoraproject.org/updates/R-3.1.1-1.el6,R-qtl-1.32.10-4.el6 Package rkward-0.6.1-9.fc19, rpy-2.3.10-2.fc19, R-3.1.1-1.fc19, R-qtl-1.32.10-4.fc19: * should fix your issue, * was pushed to the Fedora 19 testing repository, * should be available at your local mirror within two days. Update it with: # su -c 'yum update --enablerepo=updates-testing rkward-0.6.1-9.fc19 rpy-2.3.10-2.fc19 R-3.1.1-1.fc19 R-qtl-1.32.10-4.fc19' as soon as you are able to. Please go to the following url: https://admin.fedoraproject.org/updates/FEDORA-2014-8532/rkward-0.6.1-9.fc19,rpy-2.3.10-2.fc19,R-3.1.1-1.fc19,R-qtl-1.32.10-4.fc19 then log in and leave karma (feedback). (In reply to Ville Skyttä from comment #2) > Affected packages at the moment seem to include at least R-GeneR, R-ROC, > R-Rsamtools, R-caTools and R-qtl. I've rebuilt R-GeneR, R-ROC, R-Rsamtools, and R-caTools for F-21, assuming Rawhide will inherit them. R-3.1.1-1.el5, R-qtl-1.32.10-4.el5 has been pushed to the Fedora EPEL 5 stable repository. If problems still persist, please make note of it in this bug report. R-3.1.1-1.el6, R-qtl-1.32.10-4.el6 has been pushed to the Fedora EPEL 6 stable repository. If problems still persist, please make note of it in this bug report. rkward-0.6.1-9.fc19, rpy-2.3.10-2.fc19, R-3.1.1-1.fc19, R-qtl-1.32.10-4.fc19 has been pushed to the Fedora 19 stable repository. If problems still persist, please make note of it in this bug report. rkward-0.6.1-9.fc20, rpy-2.3.10-2.fc20, R-3.1.1-1.fc20, R-qtl-1.32.10-4.fc20 has been pushed to the Fedora 20 stable repository. If problems still persist, please make note of it in this bug report. |