Bug 1120983

Summary: Review Request: sambada - Landscape genomic analysis software of large datasets
Product: [Fedora] Fedora Reporter: Christopher Meng <i>
Component: Package ReviewAssignee: Nobody's working on this, feel free to take it <nobody>
Status: NEW --- QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: medium Docs Contact:
Priority: medium    
Version: rawhideCC: package-review
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Hardware: All   
OS: Linux   
Whiteboard: NotReady
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Bug Depends On: 1120982    
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Description Christopher Meng 2014-07-18 05:32:56 UTC
Spec URL: http://us-la.cicku.me/sambada.spec
SRPM URL: http://us-la.cicku.me/sambada-0.4.2-1.fc22.src.rpm
Description: Samβada is an integrated software for landscape genomic analysis of large datasets. The key features are the study of local adaptation in relation-
ship with environment and the measure of spatial autocorrelation in en-
vironmental and molecular datasets. On one hand, Samβada uses logistic
regressions to estimate the probability that an individual carries a specific
genetic marker given the habitat that characterises its sampling site. One
the other hand, spatial autocorrelation is measured with Moran’s I and lo-
cal indicators of spatial association, in order to assess whether the observed
data in each location depends on the values in the neighbouring locations.
Underlying models are kept simple to put emphasis on process efficiency and
user-available options.
Fedora Account System Username: cicku