Bug 1262015
Summary: | papi_avail segfaults (invalid free) when lustre component runs | ||||||||||
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Product: | Red Hat Enterprise Linux 6 | Reporter: | Dave Love <dave.love> | ||||||||
Component: | papi | Assignee: | William Cohen <wcohen> | ||||||||
Status: | CLOSED WONTFIX | QA Contact: | qe-baseos-tools-bugs | ||||||||
Severity: | unspecified | Docs Contact: | |||||||||
Priority: | unspecified | ||||||||||
Version: | 6.7 | CC: | dave.love, mbenitez, mcermak, ohudlick | ||||||||
Target Milestone: | rc | ||||||||||
Target Release: | --- | ||||||||||
Hardware: | Unspecified | ||||||||||
OS: | Unspecified | ||||||||||
Whiteboard: | |||||||||||
Fixed In Version: | Doc Type: | Bug Fix | |||||||||
Doc Text: | Story Points: | --- | |||||||||
Clone Of: | Environment: | ||||||||||
Last Closed: | 2015-12-09 18:06:55 UTC | Type: | Bug | ||||||||
Regression: | --- | Mount Type: | --- | ||||||||
Documentation: | --- | CRM: | |||||||||
Verified Versions: | Category: | --- | |||||||||
oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |||||||||
Cloudforms Team: | --- | Target Upstream Version: | |||||||||
Embargoed: | |||||||||||
Bug Depends On: | |||||||||||
Bug Blocks: | 1271375 | ||||||||||
Attachments: |
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Description
Dave Love
2015-09-10 15:25:32 UTC
Could you include the output from the run that failed. papi_avail ran without segfaults on a westmere machine: $ uname -a Linux cannondale 2.6.32-573.3.1.el6.x86_64 #1 SMP Mon Aug 10 09:44:54 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux $ MALLOC_CHECK_=1 papi_avail Available events and hardware information. -------------------------------------------------------------------------------- PAPI Version : 5.1.1.0 Vendor string and code : GenuineIntel (1) Model string and code : Intel(R) Core(TM) i7 CPU M 620 @ 2.67GHz (37) CPU Revision : 2.000000 CPUID Info : Family: 6 Model: 37 Stepping: 2 CPU Max Megahertz : 2667 CPU Min Megahertz : 1199 Hdw Threads per core : 2 Cores per Socket : 2 NUMA Nodes : 1 CPUs per Node : 4 Total CPUs : 4 Running in a VM : no Number Hardware Counters : 7 Max Multiplex Counters : 64 -------------------------------------------------------------------------------- Name Code Avail Deriv Description (Note) PAPI_L1_DCM 0x80000000 Yes No Level 1 data cache misses PAPI_L1_ICM 0x80000001 Yes No Level 1 instruction cache misses PAPI_L2_DCM 0x80000002 Yes Yes Level 2 data cache misses PAPI_L2_ICM 0x80000003 Yes No Level 2 instruction cache misses PAPI_L3_DCM 0x80000004 No No Level 3 data cache misses PAPI_L3_ICM 0x80000005 No No Level 3 instruction cache misses PAPI_L1_TCM 0x80000006 Yes Yes Level 1 cache misses PAPI_L2_TCM 0x80000007 Yes No Level 2 cache misses PAPI_L3_TCM 0x80000008 Yes No Level 3 cache misses PAPI_CA_SNP 0x80000009 No No Requests for a snoop PAPI_CA_SHR 0x8000000a No No Requests for exclusive access to shared cache line PAPI_CA_CLN 0x8000000b No No Requests for exclusive access to clean cache line PAPI_CA_INV 0x8000000c No No Requests for cache line invalidation PAPI_CA_ITV 0x8000000d No No Requests for cache line intervention PAPI_L3_LDM 0x8000000e Yes No Level 3 load misses PAPI_L3_STM 0x8000000f No No Level 3 store misses PAPI_BRU_IDL 0x80000010 No No Cycles branch units are idle PAPI_FXU_IDL 0x80000011 No No Cycles integer units are idle PAPI_FPU_IDL 0x80000012 No No Cycles floating point units are idle PAPI_LSU_IDL 0x80000013 No No Cycles load/store units are idle PAPI_TLB_DM 0x80000014 Yes No Data translation lookaside buffer misses PAPI_TLB_IM 0x80000015 Yes No Instruction translation lookaside buffer misses PAPI_TLB_TL 0x80000016 Yes Yes Total translation lookaside buffer misses PAPI_L1_LDM 0x80000017 Yes No Level 1 load misses PAPI_L1_STM 0x80000018 Yes No Level 1 store misses PAPI_L2_LDM 0x80000019 Yes No Level 2 load misses PAPI_L2_STM 0x8000001a Yes No Level 2 store misses PAPI_BTAC_M 0x8000001b No No Branch target address cache misses PAPI_PRF_DM 0x8000001c No No Data prefetch cache misses PAPI_L3_DCH 0x8000001d No No Level 3 data cache hits PAPI_TLB_SD 0x8000001e No No Translation lookaside buffer shootdowns PAPI_CSR_FAL 0x8000001f No No Failed store conditional instructions PAPI_CSR_SUC 0x80000020 No No Successful store conditional instructions PAPI_CSR_TOT 0x80000021 No No Total store conditional instructions PAPI_MEM_SCY 0x80000022 No No Cycles Stalled Waiting for memory accesses PAPI_MEM_RCY 0x80000023 No No Cycles Stalled Waiting for memory Reads PAPI_MEM_WCY 0x80000024 No No Cycles Stalled Waiting for memory writes PAPI_STL_ICY 0x80000025 No No Cycles with no instruction issue PAPI_FUL_ICY 0x80000026 No No Cycles with maximum instruction issue PAPI_STL_CCY 0x80000027 No No Cycles with no instructions completed PAPI_FUL_CCY 0x80000028 No No Cycles with maximum instructions completed PAPI_HW_INT 0x80000029 No No Hardware interrupts PAPI_BR_UCN 0x8000002a Yes No Unconditional branch instructions PAPI_BR_CN 0x8000002b Yes No Conditional branch instructions PAPI_BR_TKN 0x8000002c Yes No Conditional branch instructions taken PAPI_BR_NTK 0x8000002d Yes Yes Conditional branch instructions not taken PAPI_BR_MSP 0x8000002e Yes No Conditional branch instructions mispredicted PAPI_BR_PRC 0x8000002f Yes Yes Conditional branch instructions correctly predicted PAPI_FMA_INS 0x80000030 No No FMA instructions completed PAPI_TOT_IIS 0x80000031 Yes No Instructions issued PAPI_TOT_INS 0x80000032 Yes No Instructions completed PAPI_INT_INS 0x80000033 No No Integer instructions PAPI_FP_INS 0x80000034 Yes No Floating point instructions PAPI_LD_INS 0x80000035 Yes No Load instructions PAPI_SR_INS 0x80000036 Yes No Store instructions PAPI_BR_INS 0x80000037 Yes No Branch instructions PAPI_VEC_INS 0x80000038 No No Vector/SIMD instructions (could include integer) PAPI_RES_STL 0x80000039 Yes No Cycles stalled on any resource PAPI_FP_STAL 0x8000003a No No Cycles the FP unit(s) are stalled PAPI_TOT_CYC 0x8000003b Yes No Total cycles PAPI_LST_INS 0x8000003c Yes Yes Load/store instructions completed PAPI_SYC_INS 0x8000003d No No Synchronization instructions completed PAPI_L1_DCH 0x8000003e No No Level 1 data cache hits PAPI_L2_DCH 0x8000003f Yes Yes Level 2 data cache hits PAPI_L1_DCA 0x80000040 No No Level 1 data cache accesses PAPI_L2_DCA 0x80000041 Yes No Level 2 data cache accesses PAPI_L3_DCA 0x80000042 Yes Yes Level 3 data cache accesses PAPI_L1_DCR 0x80000043 No No Level 1 data cache reads PAPI_L2_DCR 0x80000044 Yes No Level 2 data cache reads PAPI_L3_DCR 0x80000045 Yes No Level 3 data cache reads PAPI_L1_DCW 0x80000046 No No Level 1 data cache writes PAPI_L2_DCW 0x80000047 Yes No Level 2 data cache writes PAPI_L3_DCW 0x80000048 Yes No Level 3 data cache writes PAPI_L1_ICH 0x80000049 Yes No Level 1 instruction cache hits PAPI_L2_ICH 0x8000004a Yes No Level 2 instruction cache hits PAPI_L3_ICH 0x8000004b No No Level 3 instruction cache hits PAPI_L1_ICA 0x8000004c Yes No Level 1 instruction cache accesses PAPI_L2_ICA 0x8000004d Yes No Level 2 instruction cache accesses PAPI_L3_ICA 0x8000004e Yes No Level 3 instruction cache accesses PAPI_L1_ICR 0x8000004f Yes No Level 1 instruction cache reads PAPI_L2_ICR 0x80000050 Yes No Level 2 instruction cache reads PAPI_L3_ICR 0x80000051 Yes No Level 3 instruction cache reads PAPI_L1_ICW 0x80000052 No No Level 1 instruction cache writes PAPI_L2_ICW 0x80000053 No No Level 2 instruction cache writes PAPI_L3_ICW 0x80000054 No No Level 3 instruction cache writes PAPI_L1_TCH 0x80000055 No No Level 1 total cache hits PAPI_L2_TCH 0x80000056 Yes Yes Level 2 total cache hits PAPI_L3_TCH 0x80000057 No No Level 3 total cache hits PAPI_L1_TCA 0x80000058 No No Level 1 total cache accesses PAPI_L2_TCA 0x80000059 Yes No Level 2 total cache accesses PAPI_L3_TCA 0x8000005a Yes No Level 3 total cache accesses PAPI_L1_TCR 0x8000005b No No Level 1 total cache reads PAPI_L2_TCR 0x8000005c Yes Yes Level 2 total cache reads PAPI_L3_TCR 0x8000005d Yes Yes Level 3 total cache reads PAPI_L1_TCW 0x8000005e No No Level 1 total cache writes PAPI_L2_TCW 0x8000005f Yes No Level 2 total cache writes PAPI_L3_TCW 0x80000060 Yes No Level 3 total cache writes PAPI_FML_INS 0x80000061 No No Floating point multiply instructions PAPI_FAD_INS 0x80000062 No No Floating point add instructions PAPI_FDV_INS 0x80000063 No No Floating point divide instructions PAPI_FSQ_INS 0x80000064 No No Floating point square root instructions PAPI_FNV_INS 0x80000065 No No Floating point inverse instructions PAPI_FP_OPS 0x80000066 Yes Yes Floating point operations PAPI_SP_OPS 0x80000067 Yes Yes Floating point operations; optimized to count scaled single precision vector operations PAPI_DP_OPS 0x80000068 Yes Yes Floating point operations; optimized to count scaled double precision vector operations PAPI_VEC_SP 0x80000069 Yes No Single precision vector/SIMD instructions PAPI_VEC_DP 0x8000006a Yes No Double precision vector/SIMD instructions PAPI_REF_CYC 0x8000006b Yes No Reference clock cycles ------------------------------------------------------------------------- Of 108 possible events, 58 are available, of which 14 are derived. avail.c PASSED Created attachment 1072497 [details]
output
Output attached. I actually see the same thing on Westmere. That's running
a Scientific Linux rebuild, but the same package version. The libraries are picked
up correctly, and rpmverify is OK on the package. I can't think what else
might be awry. Doubtless not a big issue.
The attachment doesn't seem to have the actual output in it. Are these errors only observable on Scientific Linux or are the problems seen on Red Hat Enterprise Linux 6.7? Which specific papi rpm is being used? x86_64 or i386? As stated earlier I was unable to replicate the problem on a westmere machine running RHEL6.7 and papi-5.1.1-11.el6.x86_64. Created attachment 1073183 [details]
revised output
Apologies for the bad attachment -- looks as if it picked up a rogue paste rather than the file. New one attached.
The attachment is from up-to-date RHEL 6.7 on Sandybridge. I can reproduce
that on Westmere, but only with (the same package versions) under SL as I don't
have RHEL on Westmere.
Puzzled, I got a backtrace. Presumably this only occurs when you have a
Lustre filesystem mount:
Program received signal SIGSEGV, Segmentation fault.
__libc_free (mem=0x4c41544f54) at malloc.c:3714
3714 if (chunk_is_mmapped(p)) /* release mmapped memory. */
Missing separate debuginfos, use: debuginfo-install lm_sensors-libs-3.1.1-17.el6.x86_64 papi52-papi-5.2.0-5.el6.liv.x86_64
(gdb) bt
#0 __libc_free (mem=0x4c41544f54) at malloc.c:3714
#1 0x00007ffff7ba3757 in host_finalize ()
at components/lustre/linux-lustre.c:359
#2 _lustre_shutdown_component () at components/lustre/linux-lustre.c:444
#3 0x00007ffff7b8dae9 in PAPI_shutdown () at papi.c:4401
#4 0x0000000000402fe5 in test_pass (file=0x404c90 "avail.c", values=0x0,
num_tests=0) at test_utils.c:505
#5 0x00000000004018ba in main (argc=<value optimized out>,
argv=0x7fffffffa93c) at avail.c:357
(gdb)
Created attachment 1073252 [details]
Upstream patch to address segementation faults with lustre component
A search of the upstream papi git repository turned up this patch. It doesn't apply cleanly the to lustre component in the rhel6.7 papi-5.1.1-11.el6. There are some additional patches additional patches for the lustre component committed between 5.1.1 and when this patch was commit.
RHEL6 kernels don't provide the needed lustre module. As a results, PAPI will not initialize/run the lustre component and this particular issue will not be triggered on RHEL6. There is no way to test the lustre component fixes on RHEL6. Development Management has reviewed and declined this request. You may appeal this decision by reopening this request. |