Bug 1290038

Summary: Gromacs is missing the executables
Product: [Fedora] Fedora Reporter: David <davidmenhur>
Component: gromacsAssignee: Dominik 'Rathann' Mierzejewski <dominik>
Status: CLOSED ERRATA QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: 23CC: dakingun, dominik
Target Milestone: ---   
Target Release: ---   
Hardware: x86_64   
OS: Linux   
Whiteboard:
Fixed In Version: gromacs-2016-0.1.20160318gitbec9c87.fc24 gromacs-5.1.2-1.fc23 Doc Type: Bug Fix
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2016-04-07 12:07:20 UTC Type: Bug
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: ---

Description David 2015-12-09 14:30:48 UTC
Description of problem:

The package doesn't include most of the executable commands, like g_mdrun.

Version-Release number of selected component (if applicable):
gromacs.x86_64 5.1.1-1.fc23

How reproducible:
Every time.

Steps to Reproduce:
1. dnf install gromacs
2. launch simulation with, for example, g_mdrun

Actual results:
g_mdrun command not found.


Additional info:
Typing g_<TAB><TAB> shows the following programs:
g_demux.pl      g_xplor2gmx.pl 

gmx mdrun does work.

Note that the documentation of the package states:

N.B. All binaries have names starting with g_, for example mdrun has been renamed to g_mdrun.

Comment 1 Dominik 'Rathann' Mierzejewski 2015-12-09 21:12:39 UTC
Thanks for the report. This is actually my fault, for forgetting to update package documentation to match what upstream did. I'll fix that in the next update.

Comment 2 Fedora Update System 2016-03-31 05:46:12 UTC
gromacs-2016-0.1.20160318gitbec9c87.fc24 has been submitted as an update to Fedora 24. https://bodhi.fedoraproject.org/updates/FEDORA-2016-20c281c7ac

Comment 3 Fedora Update System 2016-03-31 20:51:42 UTC
gromacs-5.1.2-1.fc23 has been submitted as an update to Fedora 23. https://bodhi.fedoraproject.org/updates/FEDORA-2016-cf40aec947

Comment 4 Fedora Update System 2016-04-01 20:55:30 UTC
gromacs-2016-0.1.20160318gitbec9c87.fc24 has been pushed to the Fedora 24 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-20c281c7ac

Comment 5 Fedora Update System 2016-04-02 05:26:15 UTC
gromacs-5.1.2-1.fc23 has been pushed to the Fedora 23 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-cf40aec947

Comment 6 Fedora Update System 2016-04-03 09:28:12 UTC
gromacs-2016-0.1.20160318gitbec9c87.fc24 votca-csg-1.3-3.fc24 has been submitted as an update to Fedora 24. https://bodhi.fedoraproject.org/updates/FEDORA-2016-20c281c7ac

Comment 7 Fedora Update System 2016-04-03 22:50:47 UTC
gromacs-2016-0.1.20160318gitbec9c87.fc24, votca-csg-1.3-3.fc24 has been pushed to the Fedora 24 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-20c281c7ac

Comment 8 Fedora Update System 2016-04-07 12:07:16 UTC
gromacs-2016-0.1.20160318gitbec9c87.fc24, votca-csg-1.3-3.fc24 has been pushed to the Fedora 24 stable repository. If problems still persist, please make note of it in this bug report.

Comment 9 Fedora Update System 2016-04-13 07:23:59 UTC
gromacs-5.1.2-1.fc23 has been pushed to the Fedora 23 stable repository. If problems still persist, please make note of it in this bug report.