Bug 1315016
| Summary: | dnf destroy RPM DB when package installed unsuccessfuly | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Frantisek Hanzlik <franta> |
| Component: | rpm | Assignee: | Packaging Maintenance Team <packaging-team-maint> |
| Status: | CLOSED INSUFFICIENT_DATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | 23 | CC: | ferdnyc, franta, jsilhan, jzeleny, lkardos, mluscon, novyjindrich, packaging-team-maint, pknirsch, pnemade, vmukhame |
| Target Milestone: | --- | Flags: | franta:
needinfo-
|
| Target Release: | --- | ||
| Hardware: | i686 | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Fixed In Version: | Doc Type: | Bug Fix | |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2016-05-09 08:39:42 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
RPM guys are much more smarter - they will find the root cause of the unsuccessful transaction. Is this somehow reproducible? This stuff: Error unpacking rpm package thunderbird-38.6.0-3.fc23.i686 error: unpacking of archive failed on file /usr/lib/thunderbird/libmozsqlite3.so;56db0e53: cpio: read error ...indicates that rpm failed to process the thunderbird-38.6.0-3.fc23.i686.rpm file that was just downloaded, due to a read error. That error wouldn't be caused by any rpmdb problems, AFAIK cpio is only used to process the .rpm file contents and never touches the rpmdb.) The cause of the cpio read error would be local file corruption. Since dnf reported no errors downloading the .rpm, it seems like a strong possibility that the local filesystem is damaged, either it's become corrupted or there are underlying disk errors. I would strongly recommend scanning that 28GB system partition and the disk it's stored on for errors. If the filesystem's damaged, it's possible that was the cause of the /var/lib/rpmdb corruption as well, not anything dnf or rpm did. |
Description of problem: on just installed F23/i686 I tried to install some additional packages. Installation one of them was unsuccessful, and after that, it seem as RPM DB is destroyed and unusable (size of original /var/lib/rpm/ was ~ 175 MB, after this incident was approx. 20 MB). Version-Release number of selected component (if applicable): dnf-1.1.6-2.fc23.noarch What I was doing (sorry, it is in Czech, I not expect that dnf/rpm libs is broken so much): [root@linux ~]# dnf install seamonkey thunderbird Last metadata expiration check performed 0:56:53 ago on Sat Mar 5 16:51:43 2016. Závislosti vyřešeny. ==================================================================================================================================================================== Package Arch Verze Repozitář Vel. ==================================================================================================================================================================== Instalování: seamonkey i686 2.39-1.fc23 updates 63 M thunderbird i686 38.6.0-3.fc23 updates 62 M Shrnutí transakce ==================================================================================================================================================================== Instalovat 2 Packages Celková velikost ke stahování: 125 M Nainstalovaná velikost: 256 M V pořádku [a/N]: a Stahování balíčků: (1/2): thunderbird-38.6.0-3.fc23.i686.rpm 1.4 MB/s | 62 MB 00:45 (2/2): seamonkey-2.39-1.fc23.i686.rpm 1.3 MB/s | 63 MB 00:48 -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Celkem 2.5 MB/s | 125 MB 00:50 Spouštím kontrolu transakce Kontrola transakce byla úspěšná Probíhá test transakce Test transakce byl úspěšný. Transakce běží Instalování : seamonkey-2.39-1.fc23.i686 1/2 Instalování : thunderbird-38.6.0-3.fc23.i686 2/2 Error unpacking rpm package thunderbird-38.6.0-3.fc23.i686 Error unpacking rpm package thunderbird-38.6.0-3.fc23.i686 error: unpacking of archive failed on file /usr/lib/thunderbird/libmozsqlite3.so;56db0e53: cpio: read error: thunderbird-38.6.0-3.fc23.i686: install failed Ověřuji : seamonkey-2.39-1.fc23.i686 1/2 thunderbird-38.6.0-3.fc23.i686 by mělo být nainstalováno, ale není! Ověřuji : thunderbird-38.6.0-3.fc23.i686 2/2 Nainstalováno: seamonkey.i686 2.39-1.fc23 Selhalo: thunderbird.i686 38.6.0-3.fc23 Hotovo! [root@linux ~]# dnf install thunderbird Traceback (most recent call last): File "/usr/bin/dnf", line 57, in <module> main.user_main(sys.argv[1:], exit_code=True) File "/usr/lib/python3.4/site-packages/dnf/cli/main.py", line 174, in user_main errcode = main(args) File "/usr/lib/python3.4/site-packages/dnf/cli/main.py", line 60, in main return _main(base, args) File "/usr/lib/python3.4/site-packages/dnf/cli/main.py", line 112, in _main cli.run() File "/usr/lib/python3.4/site-packages/dnf/cli/cli.py", line 1094, in run self._process_demands() File "/usr/lib/python3.4/site-packages/dnf/cli/cli.py", line 810, in _process_demands load_available_repos=lar) File "/usr/lib/python3.4/site-packages/dnf/base.py", line 256, in fill_sack self._add_repo_to_sack(r.id) File "/usr/lib/python3.4/site-packages/dnf/base.py", line 134, in _add_repo_to_sack load_updateinfo=True) AssertionError: Can not load repo. [root@linux ~]# rpm --rebuilddb chyba: rpmdbNextIterator: přeskakuji h# 1492 SHA1 digest v hlavičce:: BAD Expected(f2b9ac00df6a51b86ee17a2ef5be28dc0bac307e) != (0e3bd3b3fb5d5b5f6a5030bdb7327d76386d63b5) chyba: rpmdb: BDB0058 page 21781: illegal page type or format chyba: rpmdb: BDB0061 PANIC: Nepřípustný argument chyba: rpmdb: BDB3016 Packages: pgin failed for page 21781 chyba: db5 error(-30973) from dbcursor->c_get: BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery chyba: rpmdb: BDB0060 PANIC: fatal region error detected; run recovery chyba: db5 error(-30973) from dbcursor->c_close: BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery chyba: rpmdb: BDB0060 PANIC: fatal region error detected; run recovery chyba: db5 error(-30973) from db->close: BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery chyba: rpmdb: BDB1581 File handles still open at environment close chyba: rpmdb: BDB1582 Open file handle: /var/lib/rpm/Packages chyba: rpmdb: BDB0060 PANIC: fatal region error detected; run recovery chyba: db5 error(-30973) from dbenv->close: BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery Additional info: System info: AMD Sempron 3300+ CPU 1GB DDR1 RAM (895 MB usable) SiS 761GX graphic 2GB swap 28 GB system partition (all but /home), 11GB free Selinux enabled