Bug 1359812

This bug appears to have been reported against 'rawhide' during the Fedora 25 development cycle.
Changing version to '25'.

pymol-1.8.2.2-4.20160625svn4159.fc23 has been submitted as an update to Fedora 23. https://bodhi.fedoraproject.org/updates/FEDORA-2016-252cccfb22

pymol-1.8.2.2-4.20160625svn4159.fc24 has been submitted as an update to Fedora 24. https://bodhi.fedoraproject.org/updates/FEDORA-2016-aa8e294a94

pymol-1.8.2.2-4.20160625svn4159.fc23 has been pushed to the Fedora 23 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-252cccfb22

pymol-1.8.2.2-4.20160625svn4159.fc24 has been pushed to the Fedora 24 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-aa8e294a94

Now pymol have new problem in fedora 24. Whole pymol is a mess now. It is not working properly. 


Traceback (most recent call last):
  File "/usr/lib64/python3.5/site-packages/pmg_tk/PMGApp.py", line 25, in <module>
    import Queue
ImportError: No module named 'Queue'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib64/python3.5/site-packages/pymol/__init__.py", line 381, in launch_gui
    __import__(self.invocation.options.gui)
  File "/usr/lib64/python3.5/site-packages/pmg_tk/__init__.py", line 22, in <module>
    from .PMGApp import *
  File "/usr/lib64/python3.5/site-packages/pmg_tk/PMGApp.py", line 31, in <module>
    from tkinter import *
ImportError: No module named 'tkinter'

Any Idea?

(In reply to snoze from comment #6)
> Now pymol have new problem in fedora 24. Whole pymol is a mess now. It is
> not working properly. 
> 
> 
> Traceback (most recent call last):
>   File "/usr/lib64/python3.5/site-packages/pmg_tk/PMGApp.py", line 25, in
> <module>
>     import Queue
> ImportError: No module named 'Queue'
> 
> During handling of the above exception, another exception occurred:
> 
> Traceback (most recent call last):
>   File "/usr/lib64/python3.5/site-packages/pymol/__init__.py", line 381, in
> launch_gui
>     __import__(self.invocation.options.gui)
>   File "/usr/lib64/python3.5/site-packages/pmg_tk/__init__.py", line 22, in
> <module>
>     from .PMGApp import *
>   File "/usr/lib64/python3.5/site-packages/pmg_tk/PMGApp.py", line 31, in
> <module>
>     from tkinter import *
> ImportError: No module named 'tkinter'
> 
> Any Idea?

Upgrade to the latest python-pmw as well (in testing)
https://bodhi.fedoraproject.org/updates/?packages=python-pmw

pymol-1.8.2.2-4.20160625svn4159.fc24 has been pushed to the Fedora 24 stable repository. If problems still persist, please make note of it in this bug report.

pymol-1.8.2.2-4.20160625svn4159.fc23 has been pushed to the Fedora 23 stable repository. If problems still persist, please make note of it in this bug report.

Reopening the issue as it is still reproducible:

$ dnf --disablerepo=* --enablerepo=rawhide repoquery --requires pymol | grep python
/usr/bin/python
libpython3.6m.so.1.0()(64bit)
python(abi) = 3.6
python3-numpy
python3-pmw
python3-tkinter


/usr/bin/python is dragging Python 2 dependency in and should be changed to `/usr/bin/python3`.

The dependency is generated from the executable test files with the corresponding shebang:

test/show
test/cyg
test/run

This message is a reminder that Fedora 25 is nearing its end of life.
Approximately 4 (four) weeks from now Fedora will stop maintaining
and issuing updates for Fedora 25. It is Fedora's policy to close all
bug reports from releases that are no longer maintained. At that time
this bug will be closed as EOL if it remains open with a Fedora  'version'
of '25'.

Package Maintainer: If you wish for this bug to remain open because you
plan to fix it in a currently maintained version, simply change the 'version'
to a later Fedora version.

Thank you for reporting this issue and we are sorry that we were not
able to fix it before Fedora 25 is end of life. If you would still like
to see this bug fixed and are able to reproduce it against a later version
of Fedora, you are encouraged  change the 'version' to a later Fedora
version prior this bug is closed as described in the policy above.

Although we aim to fix as many bugs as possible during every release's
lifetime, sometimes those efforts are overtaken by events. Often a
more recent Fedora release includes newer upstream software that fixes
bugs or makes them obsolete.

Hello Tim,

I created a Pagure PR that fixes the both Python 2 and Python 3 dependence issue:

https://src.fedoraproject.org/rpms/pymol/pull-request/1

Please, may I ask to review and rebuild?

Fedora 25 changed to end-of-life (EOL) status on 2017-12-12. Fedora 25 is
no longer maintained, which means that it will not receive any further
security or bug fix updates. As a result we are closing this bug.

If you can reproduce this bug against a currently maintained version of
Fedora please feel free to reopen this bug against that version. If you
are unable to reopen this bug, please file a new report against the
current release. If you experience problems, please add a comment to this
bug.

Thank you for reporting this bug and we are sorry it could not be fixed.

$ dnf --disablerepo=* --enablerepo=koji repoquery --releasever=rawhide --requires pymol | grep python
/usr/bin/python
libpython3.6m.so.1.0()(64bit)
python(abi) = 3.6
python3-numpy
python3-pmw
python3-tkinter

(In reply to Miro Hrončok from comment #14)
> $ dnf --disablerepo=* --enablerepo=koji repoquery --releasever=rawhide
> --requires pymol | grep python
> /usr/bin/python
> libpython3.6m.so.1.0()(64bit)
> python(abi) = 3.6
> python3-numpy
> python3-pmw
> python3-tkinter

Sorry - this had fallen off my radar - I'll try to get to it this week!

pymol-1.8.6-4.20170314svn4170.fc27 has been submitted as an update to Fedora 27. https://bodhi.fedoraproject.org/updates/FEDORA-2017-ecf052aee0

pymol-1.8.6-4.20170314svn4170.fc26 has been submitted as an update to Fedora 26. https://bodhi.fedoraproject.org/updates/FEDORA-2017-61e54e396e

pymol-1.8.6-4.20170314svn4170.fc27 has been pushed to the Fedora 27 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2017-ecf052aee0

pymol-1.8.6-4.20170314svn4170.fc26 has been pushed to the Fedora 26 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2017-61e54e396e

pymol-1.8.6-4.20170314svn4170.fc27 has been pushed to the Fedora 27 stable repository. If problems still persist, please make note of it in this bug report.

pymol-1.8.6-4.20170314svn4170.fc26 has been pushed to the Fedora 26 stable repository. If problems still persist, please make note of it in this bug report.