Bug 1379123
| Summary: | [python-tables] tests failures on big endian arches | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Dan Horák <dan> |
| Component: | blosc | Assignee: | Thibault North <thibault.north> |
| Status: | CLOSED RAWHIDE | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | rawhide | CC: | orion, than, thibault.north, zbyszek |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | s390x | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | blosc-1.11.1-2 | Doc Type: | If docs needed, set a value |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2016-11-07 10:56:37 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | |||
| Bug Blocks: | 467765, 1071880 | ||
Upstream report: https://github.com/PyTables/PyTables/issues/583 and upstream of that: https://github.com/Blosc/c-blosc/issues/181 it's fixed in blosc-1.11.1-2.fc26 |
Some tests fail in python-tables-3.3.0 on big endian arches (ppc64, s390x) ... ====================================================================== ERROR: None (tables.tests.test_vlarray.BloscBitShuffleComprTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/tests/test_vlarray.py", line 92, in test01_read row = vlarray.read(0)[0] File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/vlarray.py", line 811, in read listarr = self._read_array(start, stop, step) File "tables/hdf5extension.pyx", line 2075, in tables.hdf5extension.VLArray._read_array (tables/hdf5extension.c:22768) raise HDF5ExtError( HDF5ExtError: HDF5 error back trace File "../../src/H5Dio.c", line 173, in H5Dread can't read data File "../../src/H5Dio.c", line 554, in H5D__read can't read data File "../../src/H5Dchunk.c", line 1904, in H5D__chunk_read chunked read failed File "../../src/H5Dscatgath.c", line 542, in H5D__scatgath_read datatype conversion failed File "../../src/H5T.c", line 4832, in H5T_convert data type conversion failed File "../../src/H5Tconv.c", line 3274, in H5T__conv_vlen can't read VL data File "../../src/H5Tvlen.c", line 891, in H5T_vlen_disk_read Unable to read VL information File "../../src/H5HG.c", line 622, in H5HG_read unable to protect global heap File "../../src/H5HG.c", line 262, in H5HG_protect unable to protect global heap File "../../src/H5AC.c", line 1262, in H5AC_protect H5C_protect() failed. File "../../src/H5C.c", line 3574, in H5C_protect can't load entry File "../../src/H5C.c", line 7954, in H5C_load_entry unable to load entry File "../../src/H5HGcache.c", line 136, in H5HG_load unable to read global heap collection File "../../src/H5Fio.c", line 120, in H5F_block_read read through metadata accumulator failed File "../../src/H5Faccum.c", line 263, in H5F__accum_read driver read request failed File "../../src/H5FDint.c", line 207, in H5FD_read addr overflow, addr = 61458, size=4096, eoa=9332 End of HDF5 error back trace VLArray._read_array: Problems reading the array data. ====================================================================== ERROR: None (tables.tests.test_vlarray.BloscBitShuffleComprTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/tests/test_vlarray.py", line 154, in test02a_getitem rows2 = vlarray[slc] File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/vlarray.py", line 675, in __getitem__ return self.read(start, stop, step) File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/vlarray.py", line 811, in read listarr = self._read_array(start, stop, step) File "tables/hdf5extension.pyx", line 2075, in tables.hdf5extension.VLArray._read_array (tables/hdf5extension.c:22768) raise HDF5ExtError( HDF5ExtError: HDF5 error back trace File "../../src/H5Dio.c", line 173, in H5Dread can't read data File "../../src/H5Dio.c", line 554, in H5D__read can't read data File "../../src/H5Dchunk.c", line 1904, in H5D__chunk_read chunked read failed File "../../src/H5Dscatgath.c", line 542, in H5D__scatgath_read datatype conversion failed File "../../src/H5T.c", line 4832, in H5T_convert data type conversion failed File "../../src/H5Tconv.c", line 3274, in H5T__conv_vlen can't read VL data File "../../src/H5Tvlen.c", line 891, in H5T_vlen_disk_read Unable to read VL information File "../../src/H5HG.c", line 622, in H5HG_read unable to protect global heap File "../../src/H5HG.c", line 262, in H5HG_protect unable to protect global heap File "../../src/H5AC.c", line 1262, in H5AC_protect H5C_protect() failed. File "../../src/H5C.c", line 3574, in H5C_protect can't load entry File "../../src/H5C.c", line 7954, in H5C_load_entry unable to load entry File "../../src/H5HGcache.c", line 136, in H5HG_load unable to read global heap collection File "../../src/H5Fio.c", line 120, in H5F_block_read read through metadata accumulator failed File "../../src/H5Faccum.c", line 263, in H5F__accum_read driver read request failed File "../../src/H5FDint.c", line 207, in H5FD_read addr overflow, addr = 61458, size=4096, eoa=9332 End of HDF5 error back trace VLArray._read_array: Problems reading the array data. ====================================================================== ERROR: None (tables.tests.test_vlarray.BloscBitShuffleComprTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/tests/test_vlarray.py", line 187, in test02b_getitem rows = numpy.array(vlarray[:], dtype=numpy.object) File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/vlarray.py", line 675, in __getitem__ return self.read(start, stop, step) File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/vlarray.py", line 811, in read listarr = self._read_array(start, stop, step) File "tables/hdf5extension.pyx", line 2075, in tables.hdf5extension.VLArray._read_array (tables/hdf5extension.c:22768) raise HDF5ExtError( HDF5ExtError: HDF5 error back trace File "../../src/H5Dio.c", line 173, in H5Dread can't read data File "../../src/H5Dio.c", line 554, in H5D__read can't read data File "../../src/H5Dchunk.c", line 1904, in H5D__chunk_read chunked read failed File "../../src/H5Dscatgath.c", line 542, in H5D__scatgath_read datatype conversion failed File "../../src/H5T.c", line 4832, in H5T_convert data type conversion failed File "../../src/H5Tconv.c", line 3274, in H5T__conv_vlen can't read VL data File "../../src/H5Tvlen.c", line 891, in H5T_vlen_disk_read Unable to read VL information File "../../src/H5HG.c", line 622, in H5HG_read unable to protect global heap File "../../src/H5HG.c", line 262, in H5HG_protect unable to protect global heap File "../../src/H5AC.c", line 1262, in H5AC_protect H5C_protect() failed. File "../../src/H5C.c", line 3574, in H5C_protect can't load entry File "../../src/H5C.c", line 7954, in H5C_load_entry unable to load entry File "../../src/H5HGcache.c", line 136, in H5HG_load unable to read global heap collection File "../../src/H5Fio.c", line 120, in H5F_block_read read through metadata accumulator failed File "../../src/H5Faccum.c", line 263, in H5F__accum_read driver read request failed File "../../src/H5FDint.c", line 207, in H5FD_read addr overflow, addr = 61458, size=4096, eoa=9332 End of HDF5 error back trace VLArray._read_array: Problems reading the array data. ====================================================================== FAIL: None (tables.tests.test_carray.BloscBitShuffleTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/tests/test_carray.py", line 180, in test01_readCArray self.assertTrue(allequal(data, obj, self.flavor)) AssertionError: False is not true ====================================================================== FAIL: None (tables.tests.test_carray.BloscBitShuffleTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/tests/test_carray.py", line 239, in test01_readCArray_out_argument self.assertTrue(allequal(data, obj, self.flavor)) AssertionError: False is not true ====================================================================== FAIL: None (tables.tests.test_carray.BloscBitShuffleTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/tests/test_carray.py", line 300, in test02_getitemCArray self.assertTrue(allequal(data, obj, self.flavor)) AssertionError: False is not true ====================================================================== FAIL: None (tables.tests.test_carray.BloscBitShuffleTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/tests/test_carray.py", line 379, in test03_setitemCArray self.assertTrue(allequal(data, obj, self.flavor)) AssertionError: False is not true ====================================================================== FAIL: None (tables.tests.test_vlarray.BloscBitShuffleComprTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/tests/test_vlarray.py", line 234, in test03_append self.flavor)) AssertionError: 0 is not true ====================================================================== FAIL: None (tables.tests.test_vlarray.BloscBitShuffleComprTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.3.0-1.fc26.s390x/usr/lib64/python2.7/site-packages/tables/tests/test_vlarray.py", line 252, in test04_get_row_size self.assertEqual(vlarray.get_row_size(0), 2 * vlarray.atom.size) AssertionError: 0L != 8 ---------------------------------------------------------------------- Ran 6173 tests in 307.046s FAILED (failures=6, errors=3, skipped=17) ... for full logs please see http://s390.koji.fedoraproject.org/koji/taskinfo?taskID=2358337 or http://ppc.koji.fedoraproject.org/koji/taskinfo?taskID=3747077 Version-Release number of selected component (if applicable): python-tables-3.3.0-1.fc26