Bug 1392166

Summary:	flirt from fsl after terminate called after throwing an instance of 'NEWMAT::SingularException'
Product:	[Fedora] Fedora	Reporter:	Knut J BJuland <knutjbj>
Component:	glibc	Assignee:	Carlos O'Donell <codonell>
Status:	CLOSED INSUFFICIENT_DATA	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	urgent	Docs Contact:
Priority:	unspecified
Version:	24	CC:	arjun.is, codonell, dj, fweimer, jakub, law, mfabian, pfrankli, siddhesh
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Hardware:	x86_64
OS:	Linux
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Last Closed:	2016-12-05 14:27:09 UTC	Type:	Bug
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Description Knut J BJuland 2016-11-05 13:25:11 UTC

Description of problem:
flirt from fsl after terminate called after throwing an instance of 'NEWMAT::SingularException'. This did not happen with Fedroa 23

Version-Release number of selected component (if applicable):
2.23.1

How reproducible:
every time 

Steps to Reproduce:
1. flirt.fsl -ref /home/knutjbj/subjects/test/dmri/xfms/tmp.bbregister.7784/fslregister/refvol.fslregister.nii -in /home/knutjbj/subjects/test/dmri/xfms/tmp.bbregister.7784/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/knutjbj/subjects/test/dmri/xfms/tmp.bbregister.7784/reg.init.dat.fsl.mat -init /home/knutjbj/subjects/test/dmri/xfms/tmp.bbregister.7784/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/bin/flirt.newdefault.20080811.sch

2.
3.

Actual results:
crash with NEWMAT::SingularException

Expected results:
should not throw NEWMAT::SingularException

Additional info:

Comment 1 Florian Weimer 2016-11-05 16:01:55 UTC

Why do you think this is a glibc (or even Fedora) bug?

In any case, we need a reduced test case under a license that does not prohibit commercial use.

Comment 2 Knut J BJuland 2016-12-05 14:23:52 UTC

When I upgrade glibc this bug was resolved. I use Fedora 25 which is not affected by this bug.