Bug 1404796
| Summary: | libRblas.so()(64bit) is needed by package R-core-3.3.2-2.el5.x86_64 | ||
|---|---|---|---|
| Product: | [Fedora] Fedora EPEL | Reporter: | John Ellson <john.ellson> |
| Component: | R | Assignee: | Tom "spot" Callaway <tcallawa> |
| Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | el5 | CC: | jure.sah, tcallawa, www+redhat |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | R-3.3.2-3.fc25 R-3.3.2-3.fc24 R-3.3.2-3.el7 R-3.3.2-3.el5 R-3.3.2-3.el6 | Doc Type: | If docs needed, set a value |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2016-12-19 06:03:30 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
This problem is not present on el5.i386 R-3.3.2-3.fc23 openblas-0.2.19-4.fc23 has been submitted as an update to Fedora 23. https://bodhi.fedoraproject.org/updates/FEDORA-2016-46ffd0fe13 R-3.3.2-3.el7 openblas-0.2.19-4.el7 has been submitted as an update to Fedora EPEL 7. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-08541f148f R-3.3.2-3.fc24 openblas-0.2.19-4.fc24 has been submitted as an update to Fedora 24. https://bodhi.fedoraproject.org/updates/FEDORA-2016-87243d4214 R-3.3.2-3.el6 has been submitted as an update to Fedora EPEL 6. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-e213692dbc R-3.3.2-3.fc25 openblas-0.2.19-4.fc25 has been submitted as an update to Fedora 25. https://bodhi.fedoraproject.org/updates/FEDORA-2016-3b99079f61 R-3.3.2-3.el5 has been submitted as an update to Fedora EPEL 5. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-11ca20b113 R-3.3.2-3.el7, openblas-0.2.19-4.el7 has been pushed to the Fedora EPEL 7 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-08541f148f R-3.3.2-3.fc23, openblas-0.2.19-4.fc23 has been pushed to the Fedora 23 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-46ffd0fe13 R-3.3.2-3.fc24, openblas-0.2.19-4.fc24 has been pushed to the Fedora 24 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-87243d4214 R-3.3.2-3.fc25, openblas-0.2.19-4.fc25 has been pushed to the Fedora 25 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-3b99079f61 R-3.3.2-3.el6 has been pushed to the Fedora EPEL 6 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-e213692dbc R-3.3.2-3.el5 has been pushed to the Fedora EPEL 5 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-11ca20b113 R-3.3.2-3.fc25, openblas-0.2.19-4.fc25 has been pushed to the Fedora 25 stable repository. If problems still persist, please make note of it in this bug report. Has this been pushed to Rawhide repos yet? I'm getting Copr failures for graphviz on fc26 due to: Error: package R-devel-3.3.2-3.fc26.i686 requires R-core-devel = 3.3.2-3.fc26, but none of the providers can be installed Ref: https://bugzilla.redhat.com/show_bug.cgi?id=1384111 (In reply to John Ellson from comment #15) > Has this been pushed to Rawhide repos yet? I'm getting Copr failures for > graphviz on fc26 due to: > > Error: package R-devel-3.3.2-3.fc26.i686 requires R-core-devel = > 3.3.2-3.fc26, but none of the providers can be installed > > > Ref: https://bugzilla.redhat.com/show_bug.cgi?id=1384111 Yes, it has been in rawhide since 12/15: https://koji.fedoraproject.org/koji/buildinfo?buildID=825702 R-core-devel-3.3.2-3.fc26.i686.rpm is definitely built. Perhaps the copr is trying to build against a secondary arch or something odd? R-3.3.2-3.fc24, openblas-0.2.19-4.fc24 has been pushed to the Fedora 24 stable repository. If problems still persist, please make note of it in this bug report. R-3.3.2-3.el7, openblas-0.2.19-4.el7 has been pushed to the Fedora EPEL 7 stable repository. If problems still persist, please make note of it in this bug report. Why is this bug closed? R-core-3.3.2-2 on EPEL 5 is still broken.
trsibley@indra ~ [1] $ sudo yum install R-core
Loaded plugins: downloadonly, fastestmirror, security
Loading mirror speeds from cached hostfile
* base: centos.eecs.wsu.edu
* epel: mirrors.cat.pdx.edu
* extras: mirror.chpc.utah.edu
* updates: mirror.sjc02.svwh.net
Setting up Install Process
Resolving Dependencies
--> Running transaction check
---> Package R-core.i386 0:3.3.2-2.el5 set to be updated
--> Processing Dependency: libRmath = 3.3.2-2.el5 for package: R-core
---> Package R-core.x86_64 0:3.3.2-2.el5 set to be updated
--> Processing Dependency: libRblas.so()(64bit) for package: R-core
--> Running transaction check
---> Package R-core.x86_64 0:3.3.2-2.el5 set to be updated
--> Processing Dependency: libRblas.so()(64bit) for package: R-core
--> Processing Dependency: libRmath = 3.3.1-3.el5 for package: libRmath-devel
---> Package libRmath.x86_64 0:3.3.2-2.el5 set to be updated
--> Running transaction check
---> Package R-core.x86_64 0:3.3.2-2.el5 set to be updated
--> Processing Dependency: libRblas.so()(64bit) for package: R-core
---> Package libRmath-devel.x86_64 0:3.3.2-2.el5 set to be updated
--> Finished Dependency Resolution
R-core-3.3.2-2.el5.x86_64 from epel has depsolving problems
--> Missing Dependency: libRblas.so()(64bit) is needed by package R-core-3.3.2-2.el5.x86_64 (epel)
Error: Missing Dependency: libRblas.so()(64bit) is needed by package R-core-3.3.2-2.el5.x86_64 (epel)
You could try using --skip-broken to work around the problem
You could try running: package-cleanup --problems
package-cleanup --dupes
rpm -Va --nofiles --nodigest
Note that nothing provides 'libRblas.so()(64bit)' anymore, although the latest R-core does contain a libRblas.so file. trsibley@indra ~ $ sudo yum whatprovides 'libRblas.so()(64bit)' Loaded plugins: downloadonly, fastestmirror, security Loading mirror speeds from cached hostfile * base: mirror.tocici.com * epel: mirrors.cat.pdx.edu * extras: mirror.chpc.utah.edu * updates: mirror.sjc02.svwh.net Warning: 3.0.x versions of yum would erroneously match against filenames. You can use "*/libRblas.so()(64bit)" and/or "*bin/libRblas.so()(64bit)" to get that behaviour No Matches found trsibley@indra ~ $ sudo yum whatprovides '*/libRblas.so*' Loaded plugins: downloadonly, fastestmirror, security Loading mirror speeds from cached hostfile * base: mirror.tocici.com * epel: mirrors.cat.pdx.edu * extras: mirror.chpc.utah.edu * updates: mirror.sjc02.svwh.net R-core-3.3.2-2.el5.i386 : The minimal R components necessary for a functional runtime Repo : epel Matched from: Filename : /usr/lib/R/lib/libRblas.so R-core-3.3.2-2.el5.x86_64 : The minimal R components necessary for a functional runtime Repo : epel Matched from: Filename : /usr/lib64/R/lib/libRblas.so Note that it _was_ provided by the previous version (I ran this before uninstalling R-core while debugging): trsibley@indra ~ $ sudo yum whatprovides 'libRblas.so()(64bit)' Loaded plugins: downloadonly, fastestmirror, security Loading mirror speeds from cached hostfile * base: mirror.tocici.com * epel: mirrors.cat.pdx.edu * extras: mirror.chpc.utah.edu * updates: centos.sonn.com R-core-3.3.1-3.el5.x86_64 : The minimal R components necessary for a functional runtime Repo : installed Matched from: Other : Provides-match: libRblas.so()(64bit) Ah, I see, according to https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-11ca20b113 the updated R-core-3.3.2-3.el5.x86_64 is in testing but not yet pushed to stable. Can someone push it to stable? The page above indicates that's possible now that the 14 day waiting period is over. R-3.3.2-3.el5 has been pushed to the Fedora EPEL 5 stable repository. If problems still persist, please make note of it in this bug report. R-3.3.2-3.el6 has been pushed to the Fedora EPEL 6 stable repository. If problems still persist, please make note of it in this bug report. To resolve this issue on a CentOS 8 clean install, you have to also enable the PowerTools repository: sudo yum config-manager --set-enabled PowerTools |
Description of problem: Error: Missing Dependency: libRblas.so()(64bit) is needed by package R-core-3.3.2-2.el5.x86_64 (epel) Version-Release number of selected component (if applicable): R-core-3.3.2-2.el5.x86_64 opsadmin@visor1 How reproducible: 100% Steps to Reproduce: 1. yum install R-core.x86_64 2. 3. Actual results: Loaded plugins: downloadonly, fastestmirror, security Loading mirror speeds from cached hostfile * base: mirror.clarkson.edu * epel: mirror.math.princeton.edu * extras: centos.mirror.nac.net * updates: mirrors.evowise.com Setting up Install Process Resolving Dependencies --> Running transaction check ---> Package R-core.x86_64 0:3.3.2-2.el5 set to be updated --> Processing Dependency: libRmath = 3.3.2-2.el5 for package: R-core --> Processing Dependency: libRblas.so()(64bit) for package: R-core --> Running transaction check ---> Package R-core.x86_64 0:3.3.2-2.el5 set to be updated --> Processing Dependency: libRblas.so()(64bit) for package: R-core ---> Package libRmath.x86_64 0:3.3.2-2.el5 set to be updated --> Finished Dependency Resolution R-core-3.3.2-2.el5.x86_64 from epel has depsolving problems --> Missing Dependency: libRblas.so()(64bit) is needed by package R-core-3.3.2-2.el5.x86_64 (epel) Error: Missing Dependency: libRblas.so()(64bit) is needed by package R-core-3.3.2-2.el5.x86_64 (epel) You could try using --skip-broken to work around the problem You could try running: package-cleanup --problems package-cleanup --dupes rpm -Va --nofiles --nodigest Expected results: No dependency errors Additional info: Problem started with today's updates. There was no problem with "yum update -y" yesterday.