Bug 1408282

Summary: TypeError: can't pickle _ped.Alignment objects
Product: [Fedora] Fedora Reporter: Adam Williamson <awilliam>
Component: python-blivetAssignee: Blivet Maintenance Team <blivet-maint-list>
Status: CLOSED EOL QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: 26CC: anaconda-maint-list, bcl, blivet-maint-list, dcantrell, g.kaviyarasu, jonathan, mkolman, robatino, vanmeeuwen+fedora, vponcova
Target Milestone: ---   
Target Release: ---   
Hardware: x86_64   
OS: Unspecified   
Whiteboard: abrt_hash:1c82ba3dcff5ed19fe6d5d583c68af45a98087f0a5e356550932f404302dccf0;
Fixed In Version: Doc Type: If docs needed, set a value
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2018-05-29 12:00:07 UTC Type: ---
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Embargoed:
Attachments:
Description Flags
File: anaconda-tb
none
File: anaconda.log
none
File: dnf.librepo.log
none
File: environ
none
File: hawkey.log
none
File: lsblk_output
none
File: lvm.log
none
File: nmcli_dev_list
none
File: os_info
none
File: storage.log
none
File: syslog
none
File: ifcfg.log
none
File: packaging.log
none
File: program.log none

Description Adam Williamson 2016-12-22 18:06:23 UTC
Description of problem:
Crash occurs on clicking 'Done' in INSTALLATION DESTINATION when running anaconda on Python 3.6. We're testing the Rawhide Python 3.6 merge; no official compose succeeded yet but I was able to build a boot.iso locally, and encountered this crash.

Version-Release number of selected component:
anaconda-26.16-1

The following was filed automatically by anaconda:
anaconda 26.16-1 exception report
Traceback (most recent call first):
  File "/usr/lib64/python3.6/copy.py", line 169, in deepcopy
    rv = reductor(4)
  File "/usr/lib64/python3.6/copy.py", line 240, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/lib64/python3.6/copy.py", line 150, in deepcopy
    y = copier(x, memo)
  File "/usr/lib64/python3.6/copy.py", line 280, in _reconstruct
    state = deepcopy(state, memo)
  File "/usr/lib64/python3.6/copy.py", line 180, in deepcopy
    y = _reconstruct(x, memo, *rv)
  File "/usr/lib/python3.6/site-packages/blivet/util.py", line 847, in variable_copy
    setattr(new, attr, copy.deepcopy(value, memo))
  File "/usr/lib/python3.6/site-packages/blivet/formats/disklabel.py", line 94, in __deepcopy__
    duplicate=('_parted_disk', '_orig_parted_disk'))
  File "/usr/lib/python3.6/site-packages/blivet/threads.py", line 45, in run_with_lock
    return m(*args, **kwargs)
  File "/usr/lib64/python3.6/copy.py", line 161, in deepcopy
    y = copier(memo)
  File "/usr/lib/python3.6/site-packages/blivet/util.py", line 847, in variable_copy
    setattr(new, attr, copy.deepcopy(value, memo))
  File "/usr/lib/python3.6/site-packages/blivet/devices/device.py", line 97, in __deepcopy__
    shallow=('_parted_partition',))
  File "/usr/lib/python3.6/site-packages/blivet/threads.py", line 45, in run_with_lock
    return m(*args, **kwargs)
  File "/usr/lib64/python3.6/copy.py", line 161, in deepcopy
    y = copier(memo)
  File "/usr/lib64/python3.6/copy.py", line 215, in _deepcopy_list
    append(deepcopy(a, memo))
  File "/usr/lib64/python3.6/copy.py", line 150, in deepcopy
    y = copier(x, memo)
  File "/usr/lib64/python3.6/copy.py", line 240, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/lib64/python3.6/copy.py", line 150, in deepcopy
    y = copier(x, memo)
  File "/usr/lib64/python3.6/copy.py", line 280, in _reconstruct
    state = deepcopy(state, memo)
  File "/usr/lib64/python3.6/copy.py", line 180, in deepcopy
    y = _reconstruct(x, memo, *rv)
  File "/usr/lib64/python3.6/copy.py", line 240, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/lib64/python3.6/copy.py", line 150, in deepcopy
    y = copier(x, memo)
  File "/usr/lib64/python3.6/copy.py", line 280, in _reconstruct
    state = deepcopy(state, memo)
  File "/usr/lib64/python3.6/copy.py", line 180, in deepcopy
    y = _reconstruct(x, memo, *rv)
  File "/usr/lib/python3.6/site-packages/blivet/blivet.py", line 1746, in copy
    new = copy.deepcopy(self)
  File "/usr/lib/python3.6/site-packages/blivet/threads.py", line 45, in run_with_lock
    return m(*args, **kwargs)
  File "/usr/lib64/python3.6/site-packages/pyanaconda/storage_utils.py", line 462, in create_snapshot
    self._storage_snap = storage.copy()
  File "/usr/lib64/python3.6/site-packages/pyanaconda/ui/gui/spokes/storage.py", line 939, in on_back_clicked
    on_disk_storage.create_snapshot(self.storage)
TypeError: can't pickle _ped.Alignment objects

Additional info:
addons:         com_redhat_docker, com_redhat_kdump
cmdline:        /usr/bin/python3  /sbin/anaconda
cmdline_file:   BOOT_IMAGE=vmlinuz initrd=initrd.img inst.stage2=hd:LABEL=Fedora-26-x86_64 quiet
executable:     /sbin/anaconda
hashmarkername: anaconda
kernel:         4.10.0-0.rc0.git7.1.fc26.x86_64
product:        Fedora
release:        Cannot get release name.
type:           anaconda
version:        rawhide

Comment 1 Adam Williamson 2016-12-22 18:06:29 UTC
Created attachment 1234825 [details]
File: anaconda-tb

Comment 2 Adam Williamson 2016-12-22 18:06:31 UTC
Created attachment 1234826 [details]
File: anaconda.log

Comment 3 Adam Williamson 2016-12-22 18:06:32 UTC
Created attachment 1234827 [details]
File: dnf.librepo.log

Comment 4 Adam Williamson 2016-12-22 18:06:33 UTC
Created attachment 1234828 [details]
File: environ

Comment 5 Adam Williamson 2016-12-22 18:06:34 UTC
Created attachment 1234829 [details]
File: hawkey.log

Comment 6 Adam Williamson 2016-12-22 18:06:35 UTC
Created attachment 1234830 [details]
File: lsblk_output

Comment 7 Adam Williamson 2016-12-22 18:06:37 UTC
Created attachment 1234831 [details]
File: lvm.log

Comment 8 Adam Williamson 2016-12-22 18:06:38 UTC
Created attachment 1234832 [details]
File: nmcli_dev_list

Comment 9 Adam Williamson 2016-12-22 18:06:39 UTC
Created attachment 1234833 [details]
File: os_info

Comment 10 Adam Williamson 2016-12-22 18:06:40 UTC
Created attachment 1234834 [details]
File: storage.log

Comment 11 Adam Williamson 2016-12-22 18:06:42 UTC
Created attachment 1234835 [details]
File: syslog

Comment 12 Adam Williamson 2016-12-22 18:06:43 UTC
Created attachment 1234836 [details]
File: ifcfg.log

Comment 13 Adam Williamson 2016-12-22 18:06:44 UTC
Created attachment 1234837 [details]
File: packaging.log

Comment 14 Adam Williamson 2016-12-22 18:06:46 UTC
Created attachment 1234838 [details]
File: program.log

Comment 15 Adam Williamson 2016-12-22 18:09:01 UTC
Looks to be in blivet.

Comment 16 Adam Williamson 2016-12-22 18:09:18 UTC
Looks like a clear F26 Alpha blocker.

Comment 17 Adam Williamson 2016-12-22 22:07:56 UTC
So yeah, this definitely looks like a Python 3.6 change. Python 3.5 could pickle parted.alignment.Alignment instances just fine:

[root@adam src (master)]# python3
Python 3.5.2 (default, Dec  5 2016, 15:47:18) 
[GCC 6.2.1 20160916 (Red Hat 6.2.1-2)] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import parted.device
>>> dev = parted.device.Device('/dev/sda')
>>> al = dev.optimumAlignment
>>> import pickle
>>> pickle.dumps(al)
b'\x80\x03cparted.alignment\nAlignment\nq\x00)\x81q\x01}q\x02X\x15\x00\x00\x00_Alignment__alignmentq\x03c_ped\nAlignment\nq\x04)\x81q\x05sb.'

but it doesn't look like 3.6 can. Not sure if this is an intentional change. Will have a look.

Comment 18 Adam Williamson 2016-12-22 22:21:41 UTC
Oh dear. I think we're in C here. A diff between Python 3.5 and Python 3.6 shows this code in Objects/typeobject.c that's in 3.6 but not 3.5:

@@ -3887,6 +3942,24 @@ _PyObject_GetState(PyObject *obj, int required)
         }
 
         assert(slotnames == Py_None || PyList_Check(slotnames));
+        if (required) {
+            Py_ssize_t basicsize = PyBaseObject_Type.tp_basicsize;
+            if (obj->ob_type->tp_dictoffset)
+                basicsize += sizeof(PyObject *);
+            if (obj->ob_type->tp_weaklistoffset)
+                basicsize += sizeof(PyObject *);
+            if (slotnames != Py_None)
+                basicsize += sizeof(PyObject *) * Py_SIZE(slotnames);
+            if (obj->ob_type->tp_basicsize > basicsize) {
+                Py_DECREF(slotnames);
+                Py_DECREF(state);
+                PyErr_Format(PyExc_TypeError,
+                             "can't pickle %.200s objects",
+                             Py_TYPE(obj)->tp_name);
+                return NULL;
+            }
+        }
+
         if (slotnames != Py_None && Py_SIZE(slotnames) > 0) {
             PyObject *slots;
             Py_ssize_t slotnames_size, i;

which seems like an obvious suspect...

Comment 19 Adam Williamson 2016-12-22 22:38:50 UTC
The message on the commit that added that check says:

    Issue #22995: Instances of extension types with a state that aren't
    subclasses of list or dict and haven't implemented any pickle-related
    methods (__reduce__, __reduce_ex__, __getnewargs__, __getnewargs_ex__,
    or __getstate__), can no longer be pickled.  Including memoryview.

It references https://bugs.python.org/issue22995 , where there's some discussion that's probably illuminating to someone who's better at C than me. I *think* we need to do some work in pyparted here to make the extension types in _ped pickle-compatible, but...I might be missing something. Definitely seems a bit beyond me!

Comment 20 Adam Williamson 2016-12-22 23:15:35 UTC
In fact, I found a way to attack this from the blivet end - it seems blivet already knew that it would have trouble trying to deepcopy some pyparted objects, and has some custom __deepcopy__ methods which shallow copy known-problematic things, but the list of things to shallow copy was missing (at least) one item. https://github.com/rhinstaller/blivet/pull/530 fixes things sufficiently for an install to run, for me. https://www.happyassassin.net/updates/1408282.0.img is an updates image with that fix.

Comment 21 Miro HronĨok 2016-12-22 23:19:15 UTC
Adam told me on IRC that he might have found a solution (involving changing it so pickling _ped.Alignment is not required).

If that doesn't work, you can do this to pickle it:

# python3
Python 3.6.0rc1 (default, Dec 10 2016, 14:50:33) 
[GCC 6.2.1 20160916 (Red Hat 6.2.1-2)] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import parted.device
>>> dev = parted.device.Device('/dev/sda')
>>> al = dev.optimumAlignment
>>> import pickle
>>> pickle.dumps(al)
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
TypeError: can't pickle _ped.Alignment objects
>>> import copyreg
>>> from parted.device import _ped
>>> def pickle_alignment(instance):
...     return _ped.Alignment, (instance.offset, instance.grain_size)
... 
>>> copyreg.pickle(_ped.Alignment, pickle_alignment)
>>> pickle.dumps(al)
b'\x80\x03cparted.alignment\nAlignment\nq\x00)\x81q\x01}q\x02X\x15\x00\x00\x00_Alignment__alignmentq\x03c_ped\nAlignment\nq\x04K\x00K\x00\x86q\x05Rq\x06sb.'
>>>

Comment 22 Adam Williamson 2016-12-24 01:45:02 UTC
I've now sent a downstream-patched Rawhide build, but perhaps we'd best leave this open for tracking to make sure the patch gets merged upstream and isn't lost from future builds.

Comment 23 Adam Williamson 2017-01-09 17:19:03 UTC
As this is addressed in the package, dropping the blocker status for now; if anything unexpected happens we can add it again.

Comment 24 Fedora End Of Life 2017-02-28 10:50:33 UTC
This bug appears to have been reported against 'rawhide' during the Fedora 26 development cycle.
Changing version to '26'.

Comment 25 Fedora End Of Life 2018-05-03 08:17:58 UTC
This message is a reminder that Fedora 26 is nearing its end of life.
Approximately 4 (four) weeks from now Fedora will stop maintaining
and issuing updates for Fedora 26. It is Fedora's policy to close all
bug reports from releases that are no longer maintained. At that time
this bug will be closed as EOL if it remains open with a Fedora  'version'
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Comment 26 Fedora End Of Life 2018-05-29 12:00:07 UTC
Fedora 26 changed to end-of-life (EOL) status on 2018-05-29. Fedora 26
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