Bug 1419282

Summary:	GDAL module library isn't loaded
Product:	[Fedora] Fedora	Reporter:	Juan Pucheu <JPUCHEU>
Component:	saga	Assignee:	Volker Fröhlich <volker27>
Status:	CLOSED EOL	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	high	Docs Contact:
Priority:	unspecified
Version:	25	CC:	volker27
Target Milestone:	---
Target Release:	---
Hardware:	x86_64
OS:	Linux
Whiteboard:
Fixed In Version:		Doc Type:	If docs needed, set a value
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:	2017-12-12 10:29:58 UTC	Type:	Bug
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:

Description Juan Pucheu 2017-02-04 20:00:08 UTC

Description of problem:
GDAL module is missing. Cannot import or export files using gdal. Other modules that depends on it also fails. 

Version-Release number of selected component (if applicable):
2.2.4

How reproducible:
always

Steps to Reproduce:
1.go to geoprocessing menu, and clic on "Load Tool Library"
2. select libio_gdal.so
3.

Actual results:
Message console, in "general" tab, displays 
"Load library: /usr/lib64/saga/libio_gdal.so...failed"

Expected results:
"Load library: /usr/lib64/saga/libio_gdal.so...okay"

Additional info:
I'm using F25, spanish localization

ldd libio_gdal.so reports 
linux-vdso.so.1 (0x00007ffda850e000)
libgdal.so.20 => /lib64/libgdal.so.20 (0x00007fc9a52f9000)
libsaga_api-2.2.4.so => /lib64/libsaga_api-2.2.4.so (0x00007fc9a4f7d000)
libgomp.so.1 => /lib64/libgomp.so.1 (0x00007fc9a4d4f000)
libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007fc9a49c7000)
libm.so.6 => /lib64/libm.so.6 (0x00007fc9a46be000)
libc.so.6 => /lib64/libc.so.6 (0x00007fc9a42f6000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007fc9a40df000)
libarmadillo.so.7 => /lib64/libarmadillo.so.7 (0x00007fc9a3ed6000)
libpoppler.so.62 => /lib64/libpoppler.so.62 (0x00007fc9a3a3b000)
libjson-c.so.2 => /lib64/libjson-c.so.2 (0x00007fc9a3830000)
libfreexl.so.1 => /lib64/libfreexl.so.1 (0x00007fc9a3626000)
libgeos_c.so.1 => /lib64/libgeos_c.so.1 (0x00007fc9a33f5000)
libwebp.so.6 => /lib64/libwebp.so.6 (0x00007fc9a3194000)
libodbc.so.2 => /lib64/libodbc.so.2 (0x00007fc9a2f26000)
libodbcinst.so.2 => /lib64/libodbcinst.so.2 (0x00007fc9a2d11000)
libkmlbase.so.1 => /lib64/libkmlbase.so.1 (0x00007fc9a2af5000)
libkmldom.so.1 => /lib64/libkmldom.so.1 (0x00007fc9a283a000)
libkmlengine.so.1 => /lib64/libkmlengine.so.1 (0x00007fc9a2601000)
libkmlxsd.so.1 => /lib64/libkmlxsd.so.1 (0x00007fc9a23ed000)
libkmlregionator.so.1 => /lib64/libkmlregionator.so.1 (0x00007fc9a21e2000)
libexpat.so.1 => /lib64/libexpat.so.1 (0x00007fc9a1fb8000)
libxerces-c-3.1.so => /lib64/libxerces-c-3.1.so (0x00007fc9a1a17000)
libopenjp2.so.7 => /lib64/libopenjp2.so.7 (0x00007fc9a17e1000)
libjasper.so.1 => /lib64/libjasper.so.1 (0x00007fc9a1588000)
libnetcdf.so.11 => /lib64/libnetcdf.so.11 (0x00007fc99e17e000)
libhdf5.so.10 => /lib64/libhdf5.so.10 (0x00007fc99dcb8000)
libogdi.so.3 => /lib64/libogdi.so.3 (0x00007fc99da97000)
libgif.so.4 => /lib64/libgif.so.4 (0x00007fc99d88d000)
libjpeg.so.62 => /lib64/libjpeg.so.62 (0x00007fc99d623000)
libgeotiff.so.2 => /lib64/libgeotiff.so.2 (0x00007fc99d3ef000)
libtiff.so.5 => /lib64/libtiff.so.5 (0x00007fc99d17b000)
libgta.so.0 => /lib64/libgta.so.0 (0x00007fc99cf70000)
libpng16.so.16 => /lib64/libpng16.so.16 (0x00007fc99cd3d000)
libcfitsio.so.2 => /lib64/libcfitsio.so.2 (0x00007fc99c964000)
libpq.so.5 => /lib64/libpq.so.5 (0x00007fc99c734000)
liblzma.so.5 => /lib64/liblzma.so.5 (0x00007fc99c50c000)
librt.so.1 => /lib64/librt.so.1 (0x00007fc99c304000)
libdapclient.so.6 => /lib64/libdapclient.so.6 (0x00007fc99c0b9000)
libdapserver.so.7 => /lib64/libdapserver.so.7 (0x00007fc99bea9000)
libdap.so.21 => /lib64/libdap.so.21 (0x00007fc99bb17000)
libspatialite.so.7 => /lib64/libspatialite.so.7 (0x00007fc99b394000)
libsqlite3.so.0 => /lib64/libsqlite3.so.0 (0x00007fc99b0bb000)
libpcre.so.1 => /lib64/libpcre.so.1 (0x00007fc99ae48000)
libcurl.so.4 => /lib64/libcurl.so.4 (0x00007fc99abca000)
libxml2.so.2 => /lib64/libxml2.so.2 (0x00007fc99a863000)
libmysqlclient.so.18 => /usr/lib64/mysql/libmysqlclient.so.18 (0x00007fc99a2bb000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fc99a09d000)
libz.so.1 => /lib64/libz.so.1 (0x00007fc999e85000)
libdl.so.2 => /lib64/libdl.so.2 (0x00007fc999c81000)
libssl.so.10 => /lib64/libssl.so.10 (0x00007fc999a15000)
libcrypto.so.10 => /lib64/libcrypto.so.10 (0x00007fc9995b5000)
libwx_baseu_xml-3.0.so.0 => /lib64/libwx_baseu_xml-3.0.so.0 (0x00007fc9993a5000)
libwx_baseu_net-3.0.so.0 => /lib64/libwx_baseu_net-3.0.so.0 (0x00007fc999154000)
libwx_baseu-3.0.so.0 => /lib64/libwx_baseu-3.0.so.0 (0x00007fc998cbd000)
libpolyclipping.so.18 => /lib64/libpolyclipping.so.18 (0x00007fc998aa2000)
/lib64/ld-linux-x86-64.so.2 (0x000055d45788e000)
libopenblaso.so.0 => /lib64/libopenblaso.so.0 (0x00007fc9967a1000)
liblapack.so.3 => /lib64/liblapack.so.3 (0x00007fc995fa2000)
libarpack.so.2 => /lib64/libarpack.so.2 (0x00007fc995d56000)
libsuperlu.so.5.1 => /lib64/libsuperlu.so.5.1 (0x00007fc995ae0000)
liblcms2.so.2 => /lib64/liblcms2.so.2 (0x00007fc995882000)
libssl3.so => /lib64/libssl3.so (0x00007fc995636000)
libsmime3.so => /lib64/libsmime3.so (0x00007fc99540f000)
libnss3.so => /lib64/libnss3.so (0x00007fc9950e5000)
libnssutil3.so => /lib64/libnssutil3.so (0x00007fc994eb7000)
libplds4.so => /lib64/libplds4.so (0x00007fc994cb3000)
libplc4.so => /lib64/libplc4.so (0x00007fc994aac000)
libnspr4.so => /lib64/libnspr4.so (0x00007fc99486d000)
libfontconfig.so.1 => /lib64/libfontconfig.so.1 (0x00007fc994629000)
libfreetype.so.6 => /lib64/libfreetype.so.6 (0x00007fc99437e000)
libgeos-3.5.0.so => /lib64/libgeos-3.5.0.so (0x00007fc993fce000)
libltdl.so.7 => /lib64/libltdl.so.7 (0x00007fc993dc4000)
libminizip.so.1 => /lib64/libminizip.so.1 (0x00007fc993bb6000)
liburiparser.so.1 => /lib64/liburiparser.so.1 (0x00007fc99399b000)
libkmlconvenience.so.1 => /lib64/libkmlconvenience.so.1 (0x00007fc99377e000)
libnsl.so.1 => /lib64/libnsl.so.1 (0x00007fc993565000)
libhdf5_hl.so.10 => /lib64/libhdf5_hl.so.10 (0x00007fc993343000)
libproj.so.9 => /lib64/libproj.so.9 (0x00007fc9930e8000)
libSM.so.6 => /lib64/libSM.so.6 (0x00007fc992ee0000)
libICE.so.6 => /lib64/libICE.so.6 (0x00007fc992cc4000)
libX11.so.6 => /lib64/libX11.so.6 (0x00007fc992985000)
libjbig.so.2.1 => /lib64/libjbig.so.2.1 (0x00007fc992779000)
libbz2.so.1 => /lib64/libbz2.so.1 (0x00007fc992569000)
libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2 (0x00007fc99231a000)
libldap_r-2.4.so.2 => /lib64/libldap_r-2.4.so.2 (0x00007fc9920bf000)
libuuid.so.1 => /lib64/libuuid.so.1 (0x00007fc991eba000)
libnghttp2.so.14 => /lib64/libnghttp2.so.14 (0x00007fc991c95000)
libidn2.so.0 => /lib64/libidn2.so.0 (0x00007fc991a73000)
libssh2.so.1 => /lib64/libssh2.so.1 (0x00007fc991844000)
libpsl.so.5 => /lib64/libpsl.so.5 (0x00007fc991636000)
libkrb5.so.3 => /lib64/libkrb5.so.3 (0x00007fc991350000)
libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x00007fc99111f000)
libcom_err.so.2 => /lib64/libcom_err.so.2 (0x00007fc990f1b000)
liblber-2.4.so.2 => /lib64/liblber-2.4.so.2 (0x00007fc990d0c000)
libldap-2.4.so.2 => /lib64/libldap-2.4.so.2 (0x00007fc990ab8000)
libgfortran.so.3 => /lib64/libgfortran.so.3 (0x00007fc990787000)
libblas.so.3 => /lib64/libblas.so.3 (0x00007fc990530000)
libtatlas.so.3 => /usr/lib64/atlas/libtatlas.so.3 (0x00007fc98f771000)
libquadmath.so.0 => /lib64/libquadmath.so.0 (0x00007fc98f531000)
libsatlas.so.3 => /usr/lib64/atlas/libsatlas.so.3 (0x00007fc98e788000)
libxcb.so.1 => /lib64/libxcb.so.1 (0x00007fc98e560000)
libkrb5support.so.0 => /lib64/libkrb5support.so.0 (0x00007fc98e351000)
libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007fc98e14d000)
libresolv.so.2 => /lib64/libresolv.so.2 (0x00007fc98df32000)
libsasl2.so.3 => /lib64/libsasl2.so.3 (0x00007fc98dd13000)
libunistring.so.2 => /lib64/libunistring.so.2 (0x00007fc98d9e3000)
libXau.so.6 => /lib64/libXau.so.6 (0x00007fc98d7df000)
libselinux.so.1 => /lib64/libselinux.so.1 (0x00007fc98d5b8000)
libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007fc98d382000)
libfreebl3.so => /lib64/libfreebl3.so (0x00007fc98d17d000)

Comment 1 Volker Fröhlich 2017-02-04 20:25:35 UTC

Odd, I can see it too, along with other errors:

[2017-02-04/21:04:18] Load library: /usr/lib64/saga/libio_grid_grib2.so...failed
[2017-02-04/21:04:24] Load library: /usr/lib64/saga/libio_gdal.so...failed
[2017-02-04/21:04:27] Load tool chain: /usr/share/saga/toolchains/imagery.xml...failed
[2017-02-04/21:04:27] Load tool chain: /usr/share/saga/toolchains/tta_tools.xml...failed
[2017-02-04/21:04:27] Load tool chain: /usr/share/saga/toolchains/climate.xml...failed
[2017-02-04/21:04:28] Load tool chain: /usr/share/saga/toolchains/terrain_analysis.xml...failed

I tried to install saga-python and saga-devel, just to be sure. The messages disappeared. However, after removing the two, the error messages are not coming back. This needs further investigation.

Comment 2 Juan Pucheu 2017-02-04 21:04:25 UTC

(In reply to Volker Fröhlich from comment #1)
> Odd, I can see it too, along with other errors:
> 
> [2017-02-04/21:04:18] Load library:
> /usr/lib64/saga/libio_grid_grib2.so...failed
> [2017-02-04/21:04:24] Load library: /usr/lib64/saga/libio_gdal.so...failed
> [2017-02-04/21:04:27] Load tool chain:
> /usr/share/saga/toolchains/imagery.xml...failed
> [2017-02-04/21:04:27] Load tool chain:
> /usr/share/saga/toolchains/tta_tools.xml...failed
> [2017-02-04/21:04:27] Load tool chain:
> /usr/share/saga/toolchains/climate.xml...failed
> [2017-02-04/21:04:28] Load tool chain:
> /usr/share/saga/toolchains/terrain_analysis.xml...failed
> 
> I tried to install saga-python and saga-devel, just to be sure. The messages
> disappeared. However, after removing the two, the error messages are not
> coming back. This needs further investigation.

saga-python was installed on my system. After first run, saga doesn't try to load the failed modules, so all the displayed modules reports "okay"

Comment 3 Volker Fröhlich 2017-02-04 21:05:29 UTC

I see!

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