Bug 1511600
| Summary: | FTBFS: network.cpp:2632:10: fatal error: cvode/cvode_dense.h: No such file or directory | ||||||||||
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| Product: | [Fedora] Fedora | Reporter: | Antonio T. (sagitter) <anto.trande> | ||||||||
| Component: | bionetgen | Assignee: | Zbigniew Jędrzejewski-Szmek <zbyszek> | ||||||||
| Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> | ||||||||
| Severity: | unspecified | Docs Contact: | |||||||||
| Priority: | unspecified | ||||||||||
| Version: | 28 | CC: | anto.trande, mboddu, ppisar, zbyszek | ||||||||
| Target Milestone: | --- | ||||||||||
| Target Release: | --- | ||||||||||
| Hardware: | Unspecified | ||||||||||
| OS: | Unspecified | ||||||||||
| URL: | https://apps.fedoraproject.org/koschei/build/3716882 | ||||||||||
| Whiteboard: | |||||||||||
| Fixed In Version: | bionetgen-2.4.0-2.fc28 bionetgen-2.4.0-2.fc29 | Doc Type: | If docs needed, set a value | ||||||||
| Doc Text: | Story Points: | --- | |||||||||
| Clone Of: | Environment: | ||||||||||
| Last Closed: | 2018-11-18 02:56:57 UTC | Type: | Bug | ||||||||
| Regression: | --- | Mount Type: | --- | ||||||||
| Documentation: | --- | CRM: | |||||||||
| Verified Versions: | Category: | --- | |||||||||
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |||||||||
| Cloudforms Team: | --- | Target Upstream Version: | |||||||||
| Embargoed: | |||||||||||
| Bug Depends On: | |||||||||||
| Bug Blocks: | 1602938 | ||||||||||
| Attachments: |
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Upstream bug: https://github.com/RuleWorld/bionetgen/issues/190 This is caused by upgrading sundials-devel from 2.7.0-11.fc27 to 3.0.0-1.fc28. This bug appears to have been reported against 'rawhide' during the Fedora 28 development cycle. Changing version to '28'. Created attachment 1444013 [details]
build.log
Created attachment 1444014 [details]
root.log
Created attachment 1444015 [details]
state.log
*** Bug 1603489 has been marked as a duplicate of this bug. *** bionetgen-2.4.0-1.fc29 has been submitted as an update to Fedora 29. https://bodhi.fedoraproject.org/updates/FEDORA-2018-ec270e5844 bionetgen-2.4.0-1.el7 has been submitted as an update to Fedora EPEL 7. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2018-fc06a0dd97 bionetgen-2.4.0-1.fc28 has been submitted as an update to Fedora 28. https://bodhi.fedoraproject.org/updates/FEDORA-2018-8ed51c02d3 bionetgen-2.4.0-1.fc29 has been pushed to the Fedora 29 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-ec270e5844 bionetgen-2.4.0-1.fc28 has been pushed to the Fedora 28 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-8ed51c02d3 bionetgen-2.4.0-1.el7 has been pushed to the Fedora EPEL 7 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2018-fc06a0dd97 bionetgen-2.4.0-2.fc29 has been submitted as an update to Fedora 29. https://bodhi.fedoraproject.org/updates/FEDORA-2018-ec270e5844 bionetgen-2.4.0-2.fc28 has been submitted as an update to Fedora 28. https://bodhi.fedoraproject.org/updates/FEDORA-2018-8ed51c02d3 bionetgen-2.4.0-2.fc29 has been pushed to the Fedora 29 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-ec270e5844 bionetgen-2.4.0-2.fc28 has been pushed to the Fedora 28 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-8ed51c02d3 bionetgen-2.4.0-2.fc28 has been pushed to the Fedora 28 stable repository. If problems still persist, please make note of it in this bug report. bionetgen-2.4.0-2.fc29 has been pushed to the Fedora 29 stable repository. If problems still persist, please make note of it in this bug report. |
Description of problem: 'bionetgen' requires 'cvode/cvode_dense.h' for compiling but this file is no longer provided by 'sundials 3.0.0'. Version-Release number of selected component (if applicable): bionetgen-2.3.0-6 How reproducible: Rebuild 'bionetgen' with 'Sundials 3.0.0' Actual results: + /usr/bin/make -O -j6 -C src make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.3.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.3.0/bng2/Network3/src' network.cpp:2632:10: fatal error: cvode/cvode_dense.h: No such file or directory #include "cvode/cvode_dense.h" ^~~~~~~~~~~~~~~~~~~~~ compilation terminated.