Bug 1549262
| Summary: | Link error after 'dnf upgrade' Lapack 3.8.0 upgraded from 3.7.1 | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Stephen Soliday <stephen.soliday> |
| Component: | lapack | Assignee: | Tom "spot" Callaway <tcallawa> |
| Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | 27 | CC: | c.david86, fkluknav, tcallawa |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | x86_64 | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Fixed In Version: | lapack-3.8.0-7.fc27 | Doc Type: | If docs needed, set a value |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2018-03-06 17:28:26 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
Good catch. They left two source files out of the lapacke Makefile in 3.8.0. I've got fixed builds going now. lapack-3.8.0-7.fc27 has been pushed to the Fedora 27 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-12cdd81d3f lapack-3.8.0-7.fc27 has been pushed to the Fedora 27 stable repository. If problems still persist, please make note of it in this bug report. |
Description of problem: Experiencing link errors after 'dnf upgrade' /usr/lib/gcc/x86_64-redhat-linux/7/../../../../lib64/liblapacke.so: undefined reference to `LAPACKE_dsytrf_aa_work' /usr/lib/gcc/x86_64-redhat-linux/7/../../../../lib64/liblapacke.so: undefined reference to `LAPACKE_ssytrf_aa_work' Version-Release number of selected component (if applicable): old (working) version: lapack-3.7.1-5.fc27.x86_64 new (failed) version: lapack-3.8.0-4.fc27.x86_64 How reproducible: Performed the following steps 3 times with same results Steps to Reproduce: 1. cat /etc/redhat-release 2. rpm -q lapack 3. echo "int main(void) { return 0; }" > test.c 4. gcc -o test test.c -lm -llapack -lblas -llapacke 5. sudo dnf downgrade blas lapack 6. rpm -q lapack 7. gcc -o test test.c -lm -llapack -lblas -llapacke 8. sudo dnf distro-sync blas lapack 9. rpm -q lapack 10. gcc -o test test.c -lm -llapack -lblas -llapacke Summary results: Step 1: Fedora release 27 (Twenty Seven) Step 2: lapack-3.8.0-4.fc27.x86_64 Step 4: link errors Step 6: lapack-3.7.1-5.fc27.x86_64 Step 7: no link errors Step 9: lapack-3.8.0-4.fc27.x86_64 Step 10: link errors Actual results: $ cat /etc/redhat-release Fedora release 27 (Twenty Seven) $ rpm -q lapack lapack-3.8.0-4.fc27.x86_64 $ echo "int main(void) { return 0; }" > test.c $ gcc -o test test.c -lm -llapack -lblas -llapacke /usr/lib/gcc/x86_64-redhat-linux/7/../../../../lib64/liblapacke.so: undefined reference to `LAPACKE_dsytrf_aa_work' /usr/lib/gcc/x86_64-redhat-linux/7/../../../../lib64/liblapacke.so: undefined reference to `LAPACKE_ssytrf_aa_work' collect2: error: ld returned 1 exit status $ sudo dnf downgrade blas lapack Last metadata expiration check: 0:31:49 ago on Mon 26 Feb 2018 02:33:08 PM EST. Dependencies resolved. ============================================================================================================================================================================== Package Arch Version Repository Size ============================================================================================================================================================================== Downgrading: blas x86_64 3.7.1-5.fc27 fedora 403 k blas-devel x86_64 3.7.1-5.fc27 fedora 17 k lapack x86_64 3.7.1-5.fc27 fedora 11 M lapack-devel x86_64 3.7.1-5.fc27 fedora 85 k Transaction Summary ============================================================================================================================================================================== Downgrade 4 Packages Total download size: 11 M Is this ok [y/N]: y Downloading Packages: (1/4): blas-devel-3.7.1-5.fc27.x86_64.rpm 130 kB/s | 17 kB 00:00 (2/4): blas-3.7.1-5.fc27.x86_64.rpm 1.6 MB/s | 403 kB 00:00 (3/4): lapack-devel-3.7.1-5.fc27.x86_64.rpm 727 kB/s | 85 kB 00:00 (4/4): lapack-3.7.1-5.fc27.x86_64.rpm 9.0 MB/s | 11 MB 00:01 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Total 2.7 MB/s | 11 MB 00:04 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Downgrading : blas-3.7.1-5.fc27.x86_64 1/8 Running scriptlet: blas-3.7.1-5.fc27.x86_64 1/8 Downgrading : lapack-3.7.1-5.fc27.x86_64 2/8 Running scriptlet: lapack-3.7.1-5.fc27.x86_64 2/8 Downgrading : blas-devel-3.7.1-5.fc27.x86_64 3/8 Downgrading : lapack-devel-3.7.1-5.fc27.x86_64 4/8 Erasing : lapack-devel-3.8.0-4.fc27.x86_64 5/8 Erasing : blas-devel-3.8.0-4.fc27.x86_64 6/8 Erasing : lapack-3.8.0-4.fc27.x86_64 7/8 Running scriptlet: lapack-3.8.0-4.fc27.x86_64 7/8 Erasing : blas-3.8.0-4.fc27.x86_64 8/8 Running scriptlet: blas-3.8.0-4.fc27.x86_64 8/8 Running as unit: run-r7dac431f910547c8899c375d4feb8091.service Running as unit: run-re2e558b6373a4a419f72ecbecb37e962.service Verifying : blas-3.7.1-5.fc27.x86_64 1/8 Verifying : lapack-3.7.1-5.fc27.x86_64 2/8 Verifying : blas-devel-3.7.1-5.fc27.x86_64 3/8 Verifying : lapack-devel-3.7.1-5.fc27.x86_64 4/8 Verifying : blas-3.8.0-4.fc27.x86_64 5/8 Verifying : blas-devel-3.8.0-4.fc27.x86_64 6/8 Verifying : lapack-3.8.0-4.fc27.x86_64 7/8 Verifying : lapack-devel-3.8.0-4.fc27.x86_64 8/8 Downgraded: blas.x86_64 3.7.1-5.fc27 blas-devel.x86_64 3.7.1-5.fc27 lapack.x86_64 3.7.1-5.fc27 lapack-devel.x86_64 3.7.1-5.fc27 Complete! $ rpm -q lapack lapack-3.7.1-5.fc27.x86_64 $ gcc -o test test.c -lm -llapack -lblas -llapacke $ sudo dnf distro-sync blas lapack Last metadata expiration check: 0:32:39 ago on Mon 26 Feb 2018 02:33:08 PM EST. Package blas-3.7.1-5.fc27.x86_64 is already installed, skipping. Package lapack-3.7.1-5.fc27.x86_64 is already installed, skipping. Dependencies resolved. ============================================================================================================================================================================== Package Arch Version Repository Size ============================================================================================================================================================================== Upgrading: blas x86_64 3.8.0-4.fc27 updates 427 k blas-devel x86_64 3.8.0-4.fc27 updates 25 k lapack x86_64 3.8.0-4.fc27 updates 8.6 M lapack-devel x86_64 3.8.0-4.fc27 updates 87 k Transaction Summary ============================================================================================================================================================================== Upgrade 4 Packages Total download size: 9.1 M Is this ok [y/N]: y Downloading Packages: (1/4): blas-devel-3.8.0-4.fc27.x86_64.rpm 6.2 kB/s | 25 kB 00:03 (2/4): blas-3.8.0-4.fc27.x86_64.rpm 106 kB/s | 427 kB 00:04 (3/4): lapack-devel-3.8.0-4.fc27.x86_64.rpm 746 kB/s | 87 kB 00:00 (4/4): lapack-3.8.0-4.fc27.x86_64.rpm 1.7 MB/s | 8.6 MB 00:05 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Total 1.0 MB/s | 9.1 MB 00:09 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : blas-3.8.0-4.fc27.x86_64 1/8 Running scriptlet: blas-3.8.0-4.fc27.x86_64 1/8 Upgrading : lapack-3.8.0-4.fc27.x86_64 2/8 Running scriptlet: lapack-3.8.0-4.fc27.x86_64 2/8 Upgrading : blas-devel-3.8.0-4.fc27.x86_64 3/8 Upgrading : lapack-devel-3.8.0-4.fc27.x86_64 4/8 Cleanup : lapack-devel-3.7.1-5.fc27.x86_64 5/8 Cleanup : blas-devel-3.7.1-5.fc27.x86_64 6/8 Cleanup : lapack-3.7.1-5.fc27.x86_64 7/8 Running scriptlet: lapack-3.7.1-5.fc27.x86_64 7/8 Cleanup : blas-3.7.1-5.fc27.x86_64 8/8 Running scriptlet: blas-3.7.1-5.fc27.x86_64 8/8 Running as unit: run-r4d2414007023477ba99bedefab65bab2.service Running as unit: run-r5147bca7e9fa47278f3f5bb0c346f8c6.service Verifying : blas-3.8.0-4.fc27.x86_64 1/8 Verifying : lapack-3.8.0-4.fc27.x86_64 2/8 Verifying : blas-devel-3.8.0-4.fc27.x86_64 3/8 Verifying : lapack-devel-3.8.0-4.fc27.x86_64 4/8 Verifying : blas-3.7.1-5.fc27.x86_64 5/8 Verifying : blas-devel-3.7.1-5.fc27.x86_64 6/8 Verifying : lapack-3.7.1-5.fc27.x86_64 7/8 Verifying : lapack-devel-3.7.1-5.fc27.x86_64 8/8 Upgraded: blas.x86_64 3.8.0-4.fc27 blas-devel.x86_64 3.8.0-4.fc27 lapack.x86_64 3.8.0-4.fc27 lapack-devel.x86_64 3.8.0-4.fc27 Complete! $ rpm -q lapack lapack-3.8.0-4.fc27.x86_64 $ gcc -o test test.c -lm -llapack -lblas -llapacke /usr/lib/gcc/x86_64-redhat-linux/7/../../../../lib64/liblapacke.so: undefined reference to `LAPACKE_dsytrf_aa_work' /usr/lib/gcc/x86_64-redhat-linux/7/../../../../lib64/liblapacke.so: undefined reference to `LAPACKE_ssytrf_aa_work' collect2: error: ld returned 1 exit status $ Expected results: Expected that there should be no linking error before and after upgrade Additional info: