Bug 1555509

Summary:	R-GenomicRanges: FTBFS in F28
Product:	[Fedora] Fedora	Reporter:	Fedora Release Engineering <releng>
Component:	R-GenomicRanges	Assignee:	Pierre-YvesChibon <pingou>
Status:	CLOSED ERRATA	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	unspecified	Docs Contact:
Priority:	unspecified
Version:	28	CC:	pingou
Target Milestone:	---
Target Release:	---
Hardware:	Unspecified
OS:	Unspecified
Whiteboard:
Fixed In Version:	R-GenomicRanges-1.30.3-1.fc28	Doc Type:	If docs needed, set a value
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:	2018-03-30 13:19:18 UTC	Type:	---
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:
Bug Depends On:
Bug Blocks:	1555378

Description Fedora Release Engineering 2018-03-14 19:11:57 UTC

Your package R-GenomicRanges failed to build from source in current F28.

https://koji.fedoraproject.org/koji/taskinfo?taskID=24764028

For details on mass rebuild see https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild

Comment 1 Fedora Update System 2018-03-23 19:14:59 UTC

R-testthat-1.0.2-5.fc28 R-snow-0.4.2-4.fc28 R-rtracklayer-1.38.3-1.fc28 R-praise-1.0.0-7.fc28 R-matrixStats-0.53.1-1.fc28 R-plogr-0.1.1-4.fc28 R-nws-1.7.0.1-15.fc28 R-magrittr-1.5-4.fc28 R-lambda.r-1.2-1.fc28 R-digest-0.6.15-1.fc28 R-futile.options-1.0.0-4.fc28 R-futile.logger-1.4.3-4.fc28 R-biomaRt-2.18.0-8.fc28 R-XVector-0.18.0-1.fc28 R-abind-1.4.5-1.fc28 R-SummarizedExperiment-1.8.1-1.fc28 R-Rsamtools-1.30.0-1.fc28 R-RSQLite-1.1.2-6.fc28 R-Rcompression-0.93.2-19.fc28 R-RCurl-1.95.4.10-1.fc28 R-R6-2.2.2-1.fc28 R-GenomicAlignments-1.14.1-1.fc28 R-DelayedArray-0.4.1-1.fc28 R-GenomicRanges-1.30.3-1.fc28 R-IRanges-2.12.0-1.fc28 R-S4Vectors-0.16.0-1.fc28 R-GenomeInfoDbData-1.0.0-1.fc28 R-GenomeInfoDb-1.14.0-1.fc28 R-BiocGenerics-0.24.0-1.fc28 R-BiocParallel-1.12.0-1.fc28 R-BH-1.66.0.1-1.fc28 has been submitted as an update to Fedora 28. https://bodhi.fedoraproject.org/updates/FEDORA-2018-d9e2a324b6

Comment 2 Fedora Update System 2018-03-24 20:07:16 UTC

R-BH-1.66.0.1-1.fc28, R-BiocGenerics-0.24.0-1.fc28, R-BiocParallel-1.12.0-1.fc28, R-DelayedArray-0.4.1-1.fc28, R-GenomeInfoDb-1.14.0-1.fc28, R-GenomeInfoDbData-1.0.0-1.fc28, R-GenomicAlignments-1.14.1-1.fc28, R-GenomicRanges-1.30.3-1.fc28, R-IRanges-2.12.0-1.fc28, R-R6-2.2.2-1.fc28, R-RCurl-1.95.4.10-1.fc28, R-RSQLite-1.1.2-6.fc28, R-Rcompression-0.93.2-19.fc28, R-Rsamtools-1.30.0-1.fc28, R-S4Vectors-0.16.0-1.fc28, R-SummarizedExperiment-1.8.1-1.fc28, R-XVector-0.18.0-1.fc28, R-abind-1.4.5-1.fc28, R-biomaRt-2.18.0-8.fc28, R-digest-0.6.15-1.fc28, R-futile.logger-1.4.3-4.fc28, R-futile.options-1.0.0-4.fc28, R-lambda.r-1.2-1.fc28, R-magrittr-1.5-4.fc28, R-matrixStats-0.53.1-1.fc28, R-nws-1.7.0.1-15.fc28, R-plogr-0.1.1-4.fc28, R-praise-1.0.0-7.fc28, R-rtracklayer-1.38.3-1.fc28, R-snow-0.4.2-4.fc28, R-testthat-1.0.2-5.fc28 has been pushed to the Fedora 28 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-d9e2a324b6

Comment 3 Fedora Update System 2018-03-30 13:19:18 UTC

R-BH-1.66.0.1-1.fc28, R-BiocGenerics-0.24.0-1.fc28, R-BiocParallel-1.12.0-1.fc28, R-DelayedArray-0.4.1-1.fc28, R-GenomeInfoDb-1.14.0-1.fc28, R-GenomeInfoDbData-1.0.0-1.fc28, R-GenomicAlignments-1.14.1-1.fc28, R-GenomicRanges-1.30.3-1.fc28, R-IRanges-2.12.0-1.fc28, R-R6-2.2.2-1.fc28, R-RCurl-1.95.4.10-1.fc28, R-RSQLite-1.1.2-6.fc28, R-Rcompression-0.93.2-19.fc28, R-Rsamtools-1.30.0-1.fc28, R-S4Vectors-0.16.0-1.fc28, R-SummarizedExperiment-1.8.1-1.fc28, R-XVector-0.18.0-1.fc28, R-abind-1.4.5-1.fc28, R-biomaRt-2.18.0-8.fc28, R-digest-0.6.15-1.fc28, R-futile.logger-1.4.3-4.fc28, R-futile.options-1.0.0-4.fc28, R-lambda.r-1.2-1.fc28, R-magrittr-1.5-4.fc28, R-matrixStats-0.53.1-1.fc28, R-nws-1.7.0.1-15.fc28, R-plogr-0.1.1-4.fc28, R-praise-1.0.0-7.fc28, R-rtracklayer-1.38.3-1.fc28, R-snow-0.4.2-4.fc28, R-testthat-1.0.2-5.fc28 has been pushed to the Fedora 28 stable repository. If problems still persist, please make note of it in this bug report.