Bug 1594498
| Summary: | libsbml FTFBS with python 3.7 | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Antonio T. (sagitter) <anto.trande> |
| Component: | libsbml | Assignee: | Zbigniew Jędrzejewski-Szmek <zbyszek> |
| Status: | CLOSED RAWHIDE | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | rawhide | CC: | anto.trande, zbyszek |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | Doc Type: | If docs needed, set a value | |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2018-06-27 20:54:07 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | |||
| Bug Blocks: | 1565020 | ||
Fixed on libsbml-5.17.0-3 |
Description of problem: Python3 binding of libsbml does not compile with Python 3.7.0. Version-Release number of selected component (if applicable): libsbml-5.17.0 Actual results: [ 0%] Swig Python source make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.17.0-Source --master /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_MULTI --define USE_QUAL --define USE_RENDER Swig: Java Bindings make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' [ 0%] Swig Ruby source cd /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby/../swig/ -I/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.17.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/src -I/builddir/build/BUILD/libSBML-5.17.0-Source/include -c++ -ruby -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.17.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/ruby/libsbml.i Traceback (most recent call last): File "/usr/lib64/python3.7/sre_parse.py", line 1021, in parse_template this = chr(ESCAPES[this][1]) KeyError: '\\s' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/swigdoc.py", line 1924, in <module> main(sys.argv) File "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/swigdoc.py", line 1881, in main processFile(file, stream, language, preprocessor_defines) File "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/swigdoc.py", line 1697, in processFile processFunctions(ostream, header.functions) File "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/swigdoc.py", line 1673, in processFunctions ostream.write(generateFunctionDocString(f.name, f.docstring, f.args, f.isInternal,f)) File "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/swigdoc.py", line 1617, in generateFunctionDocString doc = rewriteDocstringForPython(docstring) File "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/swigdoc.py", line 1397, in rewriteDocstringForPython docstring = translateAllowingBreaks(breakable_translations, docstring) File "/builddir/build/BUILD/libSBML-5.17.0-Source/src/bindings/python/../swig/swigdoc.py", line 816, in translateAllowingBreaks new_pattern = re.sub(' ', r'\s+\*?\s*', pair[0]) File "/usr/lib64/python3.7/re.py", line 192, in sub return _compile(pattern, flags).sub(repl, string, count) File "/usr/lib64/python3.7/re.py", line 309, in _subx template = _compile_repl(template, pattern) File "/usr/lib64/python3.7/re.py", line 300, in _compile_repl return sre_parse.parse_template(repl, pattern) File "/usr/lib64/python3.7/sre_parse.py", line 1024, in parse_template raise s.error('bad escape %s' % this, len(this)) re.error: bad escape \s at position 0 make[2]: *** [src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make:622: src/bindings/python/libsbml_wrap.cpp] Error 1 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make[1]: *** [CMakeFiles/Makefile2:3127: src/bindings/python/CMakeFiles/binding_python_swig.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... Scanning dependencies of target sbml-static make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build Scanning dependencies of target sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.17.0-Source/build' Additional info: Bug reported to upstream: https://sourceforge.net/p/sbml/libsbml/461/