Bug 1705217
| Summary: | Cant install CP2K at all | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Henrique C. S. Junior <henriquecsj> |
| Component: | cp2k | Assignee: | Dominik 'Rathann' Mierzejewski <dominik> |
| Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | urgent | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | 30 | CC: | dakingun, dominik, tomspur |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Fixed In Version: | cp2k-6.1-4.fc30 | Doc Type: | If docs needed, set a value |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2019-08-19 01:01:59 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
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Description
Henrique C. S. Junior
2019-05-01 18:47:54 UTC
Cannot reproduce: # dnf install cp2k-openmpi Last metadata expiration check: 0:14:51 ago on Mon 06 May 2019 09:58:43 CEST. Dependencies resolved. ======================================================================================================================== Package Architecture Version Repository Size ======================================================================================================================== Installing: cp2k-openmpi x86_64 6.1-1.fc29 fedora 17 M Installing dependencies: Lmod x86_64 7.8.9-1.fc29 updates 218 k hwloc-libs x86_64 1.11.12-1.fc29 updates 1.6 M libxc x86_64 4.3.3-1.fc29 updates 2.4 M lua-lpeg x86_64 1.0.1-10.fc29 updates 63 k papi-libs x86_64 5.6.0-8.fc29 updates 146 k blacs-common x86_64 2.0.2-26.fc29 fedora 13 k blacs-openmpi x86_64 2.0.2-26.fc29 fedora 57 k blas x86_64 3.8.0-10.fc29 fedora 418 k cp2k-common x86_64 6.1-1.fc29 fedora 21 M elpa-common noarch 2017.05.003-3.fc29 fedora 26 k elpa-openmpi x86_64 2017.05.003-3.fc29 fedora 458 k infinipath-psm x86_64 3.3-22_g4abbc60_open.6.fc29.1 fedora 196 k lapack x86_64 3.8.0-10.fc29 fedora 8.6 M libderiv x86_64 1.2.1-7.fc29 fedora 11 M libfabric x86_64 1.6.1-2.fc29 fedora 536 k libint x86_64 1.2.1-7.fc29 fedora 33 M libpfm x86_64 4.10.1-5.fc29 fedora 296 k libpsm2 x86_64 10.3.58-2.fc29 fedora 192 k libxsmm x86_64 1.9-3.fc29 fedora 758 k lua-filesystem x86_64 1.6.3-9.fc29 fedora 32 k lua-json noarch 1.3.2-10.fc29 fedora 26 k lua-term x86_64 0.07-7.fc29 fedora 15 k munge x86_64 0.5.13-2.fc29 fedora 105 k munge-libs x86_64 0.5.13-2.fc29 fedora 39 k openmpi x86_64 2.1.1-14.fc29 fedora 2.6 M opensm-libs x86_64 3.3.20-9.fc29 fedora 67 k scalapack-common x86_64 2.0.2-26.fc29 fedora 11 k scalapack-openmpi x86_64 2.0.2-26.fc29 fedora 1.7 M tcl x86_64 1:8.6.8-2.fc29 fedora 1.1 M torque-libs x86_64 4.2.10-18.fc29 fedora 129 k Transaction Summary ======================================================================================================================== Install 31 Packages Total download size: 104 M Installed size: 444 M Is this ok [y/N]: N Operation aborted. Your error message suggests you have some kind of openmpi module installed. Please disable/uninstall it. Hello, thanks for taking a look at this. I have not activated the modularity on my Fedora. From your output it seems that you're running F29, right? The problem is happening in F30. It seems that the default openmpi is now 3.1.3-2.fc30 instead of 2.1.x. I believe thats the source of error. As I can see, using modularity we can now use several openmpi but, because I do not had the time to dig into it I'm just using default configurations on my system. Sorry, I didn't notice it was for F30. I didn't have time to take good care of cp2k lately and it didn't rebuild correctly on F30, so the F29 version is in the repos. I still don't have much free time to take care of this quickly, sorry. Dear Dominik, to help with this bug I have contacted the upstream and opened an issue here: https://github.com/cp2k/cp2k/issues/348 The developer seems to have found a missing -fopenmp. As soon as possible I'll take a look at the .spec, but since I only know the basics of programming I'm not sure that I can be of much help. Looks like the problem is on CP2Ks side and they are into it. No, the problem was actually in the Fedora package and I've just fixed it. New builds are in progress: https://koji.fedoraproject.org/koji/taskinfo?taskID=36908771 I'll submit an update as soon as they're done. FEDORA-2019-a035f6245d has been submitted as an update to Fedora 30. https://bodhi.fedoraproject.org/updates/FEDORA-2019-a035f6245d cp2k-6.1-4.fc30 has been pushed to the Fedora 30 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2019-a035f6245d cp2k-6.1-4.fc30 has been pushed to the Fedora 30 stable repository. If problems still persist, please make note of it in this bug report. |