Bug 1721934

Summary:	libsbml fails to build with Python 3.8
Product:	[Fedora] Fedora	Reporter:	Miro Hrončok <mhroncok>
Component:	libsbml	Assignee:	Zbigniew Jędrzejewski-Szmek <zbyszek>
Status:	CLOSED RAWHIDE	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	high	Docs Contact:
Priority:	unspecified
Version:	rawhide	CC:	anto.trande, neuro-sig, zbyszek
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Last Closed:	2019-07-12 13:23:05 UTC	Type:	Bug
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oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
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Bug Blocks:	1686977

Description Miro Hrončok 2019-06-19 09:25:22 UTC

libsbml fails to build with Python 3.8.0b1.

[ 98%] Swig C# source
cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="--define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RESwig: C# Bindings
Creating /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/csharp-files
Creating: libsbmlcsP.dll
csharp-files/ListOfLocalRenderInformation.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalRenderInformation.cs(16,40): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/ListOfLocalRenderInformation.cs(22,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalRenderInformation.cs(27,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalStyles.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalStyles.cs(16,29): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/ListOfLocalStyles.cs(22,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalStyles.cs(27,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/StringSet.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/StringSet.cs(17,21): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/StringSet.cs(23,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/StringSet.cs(28,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/double_array.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/double_array.cs(17,24): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/double_array.cs(23,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/double_array.cs(28,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/int_array.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/int_array.cs(17,21): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/int_array.cs(23,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/int_array.cs(28,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/libsbml.cs(16,48): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(65,54): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(134,52): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(182,48): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(199,36): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(389,52): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
CMake Error at /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp/compile-native-files.cmake:101 (message):
  Could not create the managed library

For the build logs, see:
https://copr-be.cloud.fedoraproject.org/results/@python/python3.8/fedora-rawhide-x86_64/00940603-libsbml/

For all our attempts to build libsbml with Python 3.8, see:
https://copr.fedorainfracloud.org/coprs/g/python/python3.8/package/libsbml/

Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.8:
https://copr.fedorainfracloud.org/coprs/g/python/python3.8/

Let us know here if you have any questions.

Comment 1 Zbigniew Jędrzejewski-Szmek 2019-06-19 12:43:51 UTC

Hmm, it builds fine here with rpm-4.14.90-0.git14653.15.fc31.x86_64 and python3-3.8.0~b1-1.fc31.x86_64, same gcc version as in copr. Maybe this is some copr issue or heisenbug?

Comment 2 Miro Hrončok 2019-06-19 12:58:26 UTC

Trying again.

Comment 3 Zbigniew Jędrzejewski-Szmek 2019-07-12 13:23:05 UTC

https://copr.fedorainfracloud.org/coprs/g/python/python3.8/build/960228/ passed.