Bug 1838448
| Summary: | python-libpysal fails to build with Python 3.9: libpysal.io.iohandlers.tests.test_mat.test_MatIO fails | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Miro Hrončok <mhroncok> |
| Component: | python-libpysal | Assignee: | Elliott Sales de Andrade <quantum.analyst> |
| Status: | CLOSED RAWHIDE | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | rawhide | CC: | cstratak, igor.raits, mhroncok, mplch, python-sig, quantum.analyst, thrnciar |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | python-libpysal-4.3.0-1.fc33 | Doc Type: | If docs needed, set a value |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2020-07-02 20:58:20 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | 1841712, 1842213 | ||
| Bug Blocks: | 1785415, 1803234, 1803235, 1841732 | ||
This comment is mass posted to all bugs blocking the Python 3.9 tracker, sorry if it is not 100 % relevant. When in doubt, please ask.
The Python 3.9 rebuild is in progress in a Koji side tag.
If you fix this bug, please don't rebuild the package in regular rawhide, but do it in the side tag with:
$ fedpkg build --target=f33-python
The rebuild is progressing slowly and it is possible this package won't have all the required build dependencies yet. If that's the case, please just leave the fix committed and pushed and we will eventually rebuild it for you.
You are not asked to go and try rebuild all the missing dependencies yourself. If you know there is a bootstrap loop in the dependencies, let me know and we can untangle it together.
If you want to test your fix or reproduce the failure, you can still use the Copr repo mentioned in the initial comment of this bug: https://copr.fedorainfracloud.org/coprs/g/python/python3.9/
Python 3.9 update: The f33-python side tag is currently being merged.
New builds in f33-python are no longer possible, but python3 is not yet updated to Python 3.9 in rawhide. You can check when Python is Python 3.9 with:
$ koji wait-repo f33-build --build python3.9-3.9.0~b1-3.fc3
And build the packages normally after that.
*** Bug 1841728 has been marked as a duplicate of this bug. *** DEBUG util.py:600: Error: DEBUG util.py:600: Problem: conflicting requests DEBUG util.py:600: - nothing provides python3.8dist(pandas) >= 0.23 needed by python3-geopandas-0.7.0-1.fc33.noarch Current problem:
======================================================================
FAIL: test_voronoi (libpysal.cg.tests.test_voronoi.Voronoi)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builddir/build/BUILD/libpysal-4.2.2/libpysal/cg/tests/test_voronoi.py", line 20, in test_voronoi
self.assertTrue(vertices.tolist() == self.vertices)
AssertionError: False is not true
======================================================================
FAIL: test_write (libpysal.io.iohandlers.tests.test_mat.test_MatIO)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builddir/build/BUILD/libpysal-4.2.2/libpysal/io/iohandlers/tests/test_mat.py", line 43, in test_write
assert issubclass(warn[0].category, FutureWarning)
AssertionError:
-------------------- >> begin captured stdout << ---------------------
is not a file in any installed dataset.
--------------------- >> end captured stdout << ----------------------
----------------------------------------------------------------------
Ran 488 tests in 35.287s
FAILED (failures=2, skipped=41)
Hello, This is the first reminder (step 3 from https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/#_package_removal_for_long_standing_ftbfs_and_fti_bugs). If you know about this problem and are planning on fixing it, please acknowledge so by setting the bug status to ASSIGNED. If you don't have time to maintain this package, consider orphaning it, so maintainers of dependent packages realize the problem. |
python-libpysal fails to build with Python 3.9.0b1. FAIL: test_write (libpysal.io.iohandlers.tests.test_mat.test_MatIO) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILD/libpysal-4.2.2/libpysal/io/iohandlers/tests/test_mat.py", line 43, in test_write assert issubclass(warn[0].category, FutureWarning) AssertionError: -------------------- >> begin captured stdout << --------------------- is not a file in any installed dataset. --------------------- >> end captured stdout << ---------------------- ---------------------------------------------------------------------- Ran 488 tests in 22.840s FAILED (failures=1, skipped=41) For the build logs, see: https://copr-be.cloud.fedoraproject.org/results/@python/python3.9/fedora-rawhide-x86_64/01397255-python-libpysal/ For all our attempts to build python-libpysal with Python 3.9, see: https://copr.fedorainfracloud.org/coprs/g/python/python3.9/package/python-libpysal/ Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.9: https://copr.fedorainfracloud.org/coprs/g/python/python3.9/ Let us know here if you have any questions. Python 3.9 will be included in Fedora 33. To make that update smoother, we're building Fedora packages with early pre-releases of Python 3.9. A build failure prevents us from testing all dependent packages (transitive [Build]Requires), so if this package is required a lot, it's important for us to get it fixed soon. We'd appreciate help from the people who know this package best, but if you don't want to work on this now, let us know so we can try to work around it on our side.