Bug 2006090

Summary: python-Rtree does not work on s390x without spatialindex-devel
Product: [Fedora] Fedora Reporter: Ben Beasley <code>
Component: python-RtreeAssignee: Mukundan Ragavan <nonamedotc>
Status: CLOSED ERRATA QA Contact: Fedora Extras Quality Assurance <extras-qa>
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Version: 36CC: volker27
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Last Closed: 2022-02-09 18:26:46 UTC Type: Bug
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Description Ben Beasley 2021-09-20 20:37:37 UTC
Description of problem:

On s390x, “import rtree” fails unless spatialindex-devel (which is not a dependency of python3-rtree) is installed.

Version-Release number of selected component (if applicable): 0.9.4-6


How reproducible:


Steps to Reproduce:
1. $ sudo dnf install qemu-user-static
2. $ mock -r fedora-rawhide-s390x --clean
3. $ mock -r fedora-rawhide-s390x -i python3-rtree
4. $ mock -r fedora-rawhide-s390x --shell
5. # python3 -c 'import rtree'

Actual results:

> Traceback (most recent call last):
>   File "<string>", line 1, in <module>
>   File "/usr/lib/python3.10/site-packages/rtree/__init__.py", line 1, in <module>
>     from .index import Rtree
>   File "/usr/lib/python3.10/site-packages/rtree/index.py", line 6, in <module>
>     from . import core
>   File "/usr/lib/python3.10/site-packages/rtree/core.py", line 143, in <module>
>     rt.Error_GetLastErrorNum.restype = ctypes.c_int
>   File "/usr/lib64/python3.10/ctypes/__init__.py", line 387, in __getattr__
>     func = self.__getitem__(name)
>   File "/usr/lib64/python3.10/ctypes/__init__.py", line 392, in __getitem__
>     func = self._FuncPtr((name_or_ordinal, self))
> AttributeError: /usr/bin/python3: undefined symbol: Error_GetLastErrorNum

Expected results:

(success; no output)

Additional info:

Exiting the mock chroot and issuing

> $ mock -r fedora-rawhide-s390x -i spatialindex-devel

fixes the problem.

I noticed this while working on python-trimesh.

It would be nice if there were some way to patch either python-Rtree or spatialindex such that the library can be found on s390x without the -devel package. If this is not possible, at least adding a “Requires: spatialindex-devel” workaround would be appreciated.

Comment 1 Fedora Admin user for bugzilla script actions 2021-12-14 00:15:39 UTC
This package has changed maintainer in Fedora. Reassigning to the new maintainer of this component.

Comment 2 Ben Cotton 2022-02-08 21:21:35 UTC
This bug appears to have been reported against 'rawhide' during the Fedora 36 development cycle.
Changing version to 36.

Comment 3 Ben Beasley 2022-02-09 18:26:46 UTC
I can’t seem to reproduce this in F36 or Rawhide/F37 anymore. I’m not sure exactly what fixed it. Maybe it was something in 0.9.7, although I don’t see any changes that would have obviously helped.

Comment 4 Fedora Update System 2022-03-25 13:30:09 UTC
FEDORA-2022-7dbf3d7383 has been submitted as an update to Fedora 37. https://bodhi.fedoraproject.org/updates/FEDORA-2022-7dbf3d7383

Comment 5 Fedora Update System 2022-03-25 13:33:08 UTC
FEDORA-2022-7dbf3d7383 has been pushed to the Fedora 37 stable repository.
If problem still persists, please make note of it in this bug report.