Bug 2025606

Summary:	snakemake FTBFS with Sphinx 4.3.0
Product:	[Fedora] Fedora	Reporter:	Karolina Surma <ksurma>
Component:	snakemake	Assignee:	Aniket Pradhan <aniketpradhan1999>
Status:	CLOSED ERRATA	QA Contact:
Severity:	unspecified	Docs Contact:
Priority:	unspecified
Version:	rawhide	CC:	aniketpradhan1999, neuro-sig
Target Milestone:	---
Target Release:	---
Hardware:	Unspecified
OS:	Unspecified
Whiteboard:
Fixed In Version:	snakemake-6.12.3-1.fc35	Doc Type:	If docs needed, set a value
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:	2021-12-27 00:41:03 UTC	Type:	Bug
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:

Description Karolina Surma 2021-11-22 15:06:55 UTC

Description of problem:

snakemake FTBFS with Sphinx 4.3.0 that's coming to Rawhide.

Version-Release number of selected component (if applicable):
snakemake 6.8.0-1 


How reproducible:
Always

Steps to reproduce:
Build snakemake locally in mock, adding the test COPR repo:

mock -r fedora-rawhide-x86_64 --addrepo=https://download.copr.fedorainfracloud.org/results/ksurma/sphinx-4.3.0/fedora-rawhide-x86_64/ --no-clean <your.src.rpm>

Actual results:
sphinx-build -b html -d _build/doctrees   . _build/html
Running Sphinx v4.3.0
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 42 source files that are out of date
updating environment: [new config] 42 added, 0 changed, 0 removed
reading sources... [  2%] api_reference/internal/modules
reading sources... [  4%] api_reference/internal/snakemake
WARNING: autodoc: failed to import module 'benchmark' from module 'snakemake'; the following exception was raised:
No module named 'psutil'
Exception occurred:
  File "/usr/lib/python3.10/site-packages/sphinx/util/docstrings.py", line 75, in prepare_docstring
    lines = s.expandtabs(tabsize).splitlines()
AttributeError: 'member_descriptor' object has no attribute 'expandtabs'

Expected results:
Docs are built, build succeeds

Comment 1 Aniket Pradhan 2021-12-18 10:45:44 UTC

Fixed with the new version 6.12.3. Thanks for the report :D

Comment 2 Fedora Update System 2021-12-18 10:56:51 UTC

FEDORA-2021-54ad2e13d5 has been submitted as an update to Fedora 35. https://bodhi.fedoraproject.org/updates/FEDORA-2021-54ad2e13d5

Comment 3 Fedora Update System 2021-12-19 01:19:06 UTC

FEDORA-2021-54ad2e13d5 has been pushed to the Fedora 35 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --advisory=FEDORA-2021-54ad2e13d5`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2021-54ad2e13d5

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 4 Fedora Update System 2021-12-27 00:41:03 UTC

FEDORA-2021-54ad2e13d5 has been pushed to the Fedora 35 stable repository.
If problem still persists, please make note of it in this bug report.